mRNA_Ecto-sp13_S_contig60474.16686.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60474.16686.1
Unique NamemRNA_Ecto-sp13_S_contig60474.16686.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60474.16686.1 vs. uniprot
Match: A0A6H5JDL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDL5_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 1.980e-23
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 1 
Query:   85 LGAQGG-HVDVIKWGRENGGGCNSEARYWAAVGGHVHVLEYFNTIGLSWGE 234
            +G+ GG HVDVIKWGRENGGGCNSEA YWAAVGGHVHV EYFNTIGLSWGE
Sbjct:  210 VGSPGGEHVDVIKWGRENGGGCNSEAGYWAAVGGHVHVKEYFNTIGLSWGE 260
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BLAST of mRNA_Ecto-sp13_S_contig60474.16686.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.500e-18
Identity = 42/59 (71.19%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   58 SADLTRVCTLGAQGGHVDVIKWGRENGGGCNSEARYWAAVGGHVHVLEYFNTIGLSWGE 234
            SADLTRV               GRENGGGCNSEA YWAAVGGHVHVLEYFNTI LSWGE
Sbjct:  271 SADLTRVXXXXXXXXXXXXXXXGRENGGGCNSEAGYWAAVGGHVHVLEYFNTIWLSWGE 329
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60474.16686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JDL5_9PHAE1.980e-2388.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH49_ECTSI1.500e-1871.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60474contigEcto-sp13_S_contig60474:594..827 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size234
Hectar predicted targeting categoryother localisation
Exons1
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.503615-CDS-Ecto-sp13_S_contig60474:593..8271681463842.503615-CDS-Ecto-sp13_S_contig60474:593..827Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60474 594..827 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60474.16686.1prot_Ecto-sp13_S_contig60474.16686.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60474 594..827 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60474.16686.1

>prot_Ecto-sp13_S_contig60474.16686.1 ID=prot_Ecto-sp13_S_contig60474.16686.1|Name=mRNA_Ecto-sp13_S_contig60474.16686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
NAARHGHLHLLRWAFASGCSADLTRVCTLGAQGGHVDVIKWGRENGGGCN
SEARYWAAVGGHVHVLEYFNTIGLSWGE
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mRNA from alignment at Ecto-sp13_S_contig60474:594..827-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60474.16686.1 ID=mRNA_Ecto-sp13_S_contig60474.16686.1|Name=mRNA_Ecto-sp13_S_contig60474.16686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60474:594..827- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCTGCCAGGCACGGGCACCTCCACCTTCTGCGGTGGGCTTTTGCTAG
CGGCTGCAGTGCAGACCTGACGAGGGTGTGTACGTTGGGAGCCCAGGGGG
GGCACGTGGATGTTATCAAGTGGGGCAGGGAGAACGGCGGCGGTTGCAAT
AGCGAAGCACGCTACTGGGCCGCCGTTGGGGGTCACGTACATGTGTTGGA
GTACTTTAACACGATTGGGCTTTCATGGGGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60474:594..827-

>mRNA_Ecto-sp13_S_contig60474.16686.1 ID=mRNA_Ecto-sp13_S_contig60474.16686.1|Name=mRNA_Ecto-sp13_S_contig60474.16686.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60474:594..827- (Ectocarpus species13 EcNAP12_S_4_19m)
AATGCTGCCAGGCACGGGCACCTCCACCTTCTGCGGTGGGCTTTTGCTAG
CGGCTGCAGTGCAGACCTGACGAGGGTGTGTACGTTGGGAGCCCAGGGGG
GGCACGTGGATGTTATCAAGTGGGGCAGGGAGAACGGCGGCGGTTGCAAT
AGCGAAGCACGCTACTGGGCCGCCGTTGGGGGTCACGTACATGTGTTGGA
GTACTTTAACACGATTGGGCTTTCATGGGGTGAG
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