mRNA_Ecto-sp13_S_contig60460.16684.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60460.16684.1
Unique NamemRNA_Ecto-sp13_S_contig60460.16684.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60460.16684.1 vs. uniprot
Match: A0A6H5KDN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDN1_9PHAE)

HSP 1 Score: 174 bits (442), Expect = 5.220e-53
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 GLEVRDAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGGQESVTMYTSVNGPAK 258
            GLEV DAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGG+ESVTMYTSVNGPAK
Sbjct:  180 GLEVVDAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLAKDGYTMTEPLAMFEVYSGQGGEESVTMYTSVNGPAK 265
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60460.16684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KDN1_9PHAE5.220e-5397.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60460contigEcto-sp13_S_contig60460:239..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size261
Hectar predicted targeting categoryother localisation
Exons1
Cds size261
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.431326-CDS-Ecto-sp13_S_contig60460:238..4991681463842.431326-CDS-Ecto-sp13_S_contig60460:238..499Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60460 239..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60460.16684.1prot_Ecto-sp13_S_contig60460.16684.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60460 239..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60460.16684.1

>prot_Ecto-sp13_S_contig60460.16684.1 ID=prot_Ecto-sp13_S_contig60460.16684.1|Name=mRNA_Ecto-sp13_S_contig60460.16684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
GLEVRDAKGSPAISNGFTASVISPPGQYLRDDHDGKPGVTPWISFMARLA
KDGYTMTEPLAMFEVYSGQGGQESVTMYTSVNGPAK*
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mRNA from alignment at Ecto-sp13_S_contig60460:239..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60460.16684.1 ID=mRNA_Ecto-sp13_S_contig60460.16684.1|Name=mRNA_Ecto-sp13_S_contig60460.16684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60460:239..499- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACTGGAGGTCAGGGATGCCAAGGGTTCTCCCGCCATCTCGAACGGTTT
CACCGCCAGCGTAATCTCCCCGCCGGGGCAGTACCTGCGGGACGACCACG
ACGGGAAGCCCGGCGTGACTCCCTGGATCTCGTTCATGGCGCGACTAGCG
AAGGACGGGTACACCATGACGGAGCCCCTGGCGATGTTCGAGGTCTACTC
CGGGCAGGGAGGACAGGAGTCGGTGACGATGTACACCTCCGTGAACGGCC
CGGCCAAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60460:239..499-

>mRNA_Ecto-sp13_S_contig60460.16684.1 ID=mRNA_Ecto-sp13_S_contig60460.16684.1|Name=mRNA_Ecto-sp13_S_contig60460.16684.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60460:239..499- (Ectocarpus species13 EcNAP12_S_4_19m)
GGACTGGAGGTCAGGGATGCCAAGGGTTCTCCCGCCATCTCGAACGGTTT
CACCGCCAGCGTAATCTCCCCGCCGGGGCAGTACCTGCGGGACGACCACG
ACGGGAAGCCCGGCGTGACTCCCTGGATCTCGTTCATGGCGCGACTAGCG
AAGGACGGGTACACCATGACGGAGCCCCTGGCGATGTTCGAGGTCTACTC
CGGGCAGGGAGGACAGGAGTCGGTGACGATGTACACCTCCGTGAACGGCC
CGGCCAAGTAG
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