mRNA_Ecto-sp13_S_contig6045.16682.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6045.16682.1
Unique NamemRNA_Ecto-sp13_S_contig6045.16682.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: D7G3V5_ECTSI (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3V5_ECTSI)

HSP 1 Score: 181 bits (458), Expect = 9.520e-53
Identity = 90/94 (95.74%), Postives = 92/94 (97.87%), Query Frame = 1 
Query:   34 GVCPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVL 315
            GVCPFADDPVEAAR ALQ+GILAQPLALESLD ALSSWHYSRQSDRY+PLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVL
Sbjct:   55 GVCPFADDPVEAARRALQDGILAQPLALESLDGALSSWHYSRQSDRYEPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVL 148
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A836C741_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C741_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.760e-15
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 1 
Query:   37 VCPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLL 309
             CP+A+D   A R  L   I  Q LA++ +  A  SW + R++   QPLV+ALTG TG GKTETAW +A+ALLTKR         +P G+L
Sbjct:  605 ACPYAEDAPAAVRKVLTAKIKGQSLAVDQIVKAFESWQFQRKAGLRQPLVLALTGQTGVGKTETAWQVAEALLTKR------QHGVPTGML 689
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A485KDB2_9STRA (Aste57867_2684 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDB2_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.130e-14
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDR-YQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            C F D P  + R  L + + AQ  ALES+  A+ SW +SR + + + PLV+A+TG TGTGKTET+ +LA+ L   R R+    +++P GLLV +
Sbjct:   79 CGFVDHPSASVRTHLTSHLKAQDRALESIVGAIESWEFSRSNSKDHAPLVLAITGPTGTGKTETSNLLAEGLFKHRKRLQHSEKEVPSGLLVFR 172
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A7S3HEH0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HEH0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.300e-14
Identity = 39/93 (41.94%), Postives = 61/93 (65.59%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            CPF D+ +E+ +  L+  I  Q   L+++ SA+S+W + RQS + +PLV+ALTG TG GK+ET++ LA+  L KR ++    +  P GLL L+
Sbjct:   56 CPFRDNMMESIKHNLERHIRGQNEGLDTILSAISAWEFQRQSGQSEPLVLALTGPTGVGKSETSFRLAEGALGKRSKVGKSLKYRPNGLLALR 148
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A6G0W9D6_9STRA (AAA domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9D6_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 2.870e-14
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    7 WDGMGWHAAGVCPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQ-PLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            W+ +G+     C F D P  + R  LQ  + AQ  ALE++  A+ SW +SR + + Q PLV+A+TG TGTGKTET+ +LA+ L  +R R+    ++I  GL+V +
Sbjct:   65 WEWLGF--GDQCRFVDHPSVSVRKHLQTHLKAQDRALETIIGAIESWEFSRSNSKDQAPLVLAITGPTGTGKTETSNLLAEGLFKRRKRLEHSEKEIASGLIVFR 167
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A7S2V512_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V512_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.140e-14
Identity = 41/94 (43.62%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQPLVVALTGSTGTGKTETAWVLADALLTKRCRITG-GTRDIPRGLLVLK 318
            CP+ + P+EA +  L   I  Q  A +++ SA   W   R+    QPLV+A+TG TG GKTETA VLA+ALL KR +++  G R  P GL++ +
Sbjct:  164 CPYVEAPIEAVQGLLPQRIKGQEKAQQAILSAFQYWEMGRKQASQQPLVIAITGPTGVGKTETAHVLAEALLQKREKVSETGDRTRPAGLIIFR 257
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: K3WL49_GLOUD (AAA domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WL49_GLOUD)

HSP 1 Score: 74.3 bits (181), Expect = 2.250e-13
Identity = 40/105 (38.10%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:    7 WDGMGWHAAGVCPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQ-PLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            + G+G+     C F ++P ++ R  L+  + AQ  AL+S+ +A+ +W +SR S++ Q PLV+A+TG TGTGKTE + +LA++L  +R R+    + +  GLLV +
Sbjct:   40 YTGLGYQ----CTFVENPSQSVRSYLETHLKAQDRALDSVVAAIEAWEFSRSSNKDQSPLVLAITGPTGTGKTEMSNLLAESLFKRRKRLPNSEKVVASGLLVFR 140
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A067D1W6_SAPPC (AAA domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D1W6_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 2.540e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDR-YQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            C F + P  A R  LQ  +  Q  AL+S+  A+ SW +SR S + + PLV+A+TG TGTGKTET+ ++A+ L  +R ++    + +P GLLV +
Sbjct:   58 CDFVEHPSVAVRSHLQKYLTGQDRALDSVVGAIESWEFSRTSSKDHGPLVMAITGPTGTGKTETSTLIAEGLFRRRRKLEHSEKLVPTGLLVFR 151
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A6A3TT52_9STRA (AAA domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TT52_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.540e-13
Identity = 36/94 (38.30%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDRYQ-PLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            C F D P +  R  LQ  +  Q  A+E++  A+ +W +SR S + + PLV+A+TG TGTGKTET+ ++A+AL  ++ ++    + +P GLL+ +
Sbjct:   45 CTFVDKPSQVVRSHLQQNLKGQERAVEAVVGAIEAWEFSRTSTKDRAPLVLAITGPTGTGKTETSNLIAEALFKRKKKLPNSEKRVPSGLLIFR 138
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BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Match: A0A1V9ZLY5_9STRA (AAA domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZLY5_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 3.580e-13
Identity = 38/94 (40.43%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:   40 CPFADDPVEAARWALQNGILAQPLALESLDSALSSWHYSRQSDR-YQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPRGLLVLK 318
            C F D P  A R  LQ  ++AQ  A++S+ +A+ SW +SR S + + PLV+A+TG TGTGKT T+ ++A+ L  ++ ++    + +P GLLV +
Sbjct:   78 CEFVDHPSVAVRAHLQKHLIAQDRAVDSVVAAIESWEFSRTSSKDHGPLVLAITGPTGTGKTATSSLVAEGLFRRQRKLEHSDKVVPTGLLVFR 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6045.16682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3V5_ECTSI9.520e-5395.74AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C741_9STRA3.760e-1546.15P-loop containing nucleoside triphosphate hydrolas... [more]
A0A485KDB2_9STRA1.130e-1443.62Aste57867_2684 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S3HEH0_9STRA2.300e-1441.94Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6G0W9D6_9STRA2.870e-1440.95AAA domain-containing protein n=1 Tax=Aphanomyces ... [more]
A0A7S2V512_9STRA3.140e-1443.62Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
K3WL49_GLOUD2.250e-1338.10AAA domain-containing protein n=1 Tax=Globisporang... [more]
A0A067D1W6_SAPPC2.540e-1341.49AAA domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A6A3TT52_9STRA3.540e-1338.30AAA domain-containing protein n=2 Tax=Phytophthora... [more]
A0A1V9ZLY5_9STRA3.580e-1340.43AAA domain-containing protein n=1 Tax=Achlya hypog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6045contigEcto-sp13_S_contig6045:7400..8256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score183.7
Seed ortholog evalue4.4e-44
Seed eggNOG ortholog2880.D7G3V5
Preferred nameTOR4A
Model size321
Hectar predicted targeting categoryother localisation
GOsGO:0002576,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006887,GO:0008150,GO:0009987,GO:0012505,GO:0016192,GO:0030141,GO:0031091,GO:0031093,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032940,GO:0034774,GO:0043226,GO:0043227,GO:0043229,GO:0043233,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0046903,GO:0051179,GO:0051234,GO:0060205,GO:0070013,GO:0097708,GO:0099503
Exons2
EggNOG free text desc.chaperone cofactor-dependent protein refolding
EggNOG OGsKOG2170@1,KOG2170@2759
Cds size321
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.2512412-CDS-Ecto-sp13_S_contig6045:7399..75541681463842.2512412-CDS-Ecto-sp13_S_contig6045:7399..7554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6045 7400..7554 +
1681463842.2675092-CDS-Ecto-sp13_S_contig6045:8090..82561681463842.2675092-CDS-Ecto-sp13_S_contig6045:8090..8256Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6045 8091..8256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6045.16682.1prot_Ecto-sp13_S_contig6045.16682.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6045 7400..8256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6045.16682.1

>prot_Ecto-sp13_S_contig6045.16682.1 ID=prot_Ecto-sp13_S_contig6045.16682.1|Name=mRNA_Ecto-sp13_S_contig6045.16682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MGWDGMGWHAAGVCPFADDPVEAARWALQNGILAQPLALESLDSALSSWH
YSRQSDRYQPLVVALTGSTGTGKTETAWVLADALLTKRCRITGGTRDIPR
GLLVLK*
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mRNA from alignment at Ecto-sp13_S_contig6045:7400..8256+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6045.16682.1 ID=mRNA_Ecto-sp13_S_contig6045.16682.1|Name=mRNA_Ecto-sp13_S_contig6045.16682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=857bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6045:7400..8256+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATGGGATGGGATGGGATGGCACGCGGCAGGCGTGTGTCCCTTTGC
CGATGACCCGGTAGAGGCGGCAAGATGGGCTCTACAGAACGGCATCCTGG
CGCAGCCGCTCGCCTTAGAATCTCTCGACAGTGCTCTGTCCTCTTGGCAC
TACAGGTACAATGAGCGAGCGACCCCATGCCAGTCTTAAGTGTTTGAGTT
GTGTTTTCTTAGTGCTGAAGCTTGCTAGTACCGGTGTGGATGTCAACCTC
CGCTCTCTCTCACTCTCTCTCTCTCATTTTTTAGCATGTTTTCTCGGCCT
GGAGTGTACGGGGTGATGCGATTTCCGTTTTACATGTCTGGCCCTTCCTA
CTCTTCACGCACCAAACAAGATCACCTATTTCATTTCCACGAACAGGAAG
TCATTGCGCCTCGCACGCGCACATTGTACAAATGCGCCCCGCGCGTGCAC
ATGCTGCTTGTTTGCCCACTCGCTGCTTAGTGAAAAGAAACACAATCGAC
AAGTCCGAGAACCACCGCGGTATGTAACTAACCCCGTCGCACACGGGAAC
GGTGTGTCCCAAACCGAGACAACTTCTCTCACGACATTTGACCGTTGTCT
TTCATGCTCACTCCTGTCTAAACAACAACAACCATGACGACGACGACGAC
GATGACGACGACTGTGATGACGGCGAATGAGACGCTCGTAGCCGGCAGTC
AGACCGGTACCAGCCGCTGGTAGTGGCGCTGACGGGGTCGACGGGCACCG
GGAAGACGGAGACGGCGTGGGTGCTGGCGGACGCCTTGCTGACCAAGCGC
TGCCGCATCACGGGCGGCACGAGGGACATCCCCAGGGGACTCCTGGTGCT
CAAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6045:7400..8256+

>mRNA_Ecto-sp13_S_contig6045.16682.1 ID=mRNA_Ecto-sp13_S_contig6045.16682.1|Name=mRNA_Ecto-sp13_S_contig6045.16682.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6045:7400..8256+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGATGGGATGGGATGGGATGGCACGCGGCAGGCGTGTGTCCCTTTGC
CGATGACCCGGTAGAGGCGGCAAGATGGGCTCTACAGAACGGCATCCTGG
CGCAGCCGCTCGCCTTAGAATCTCTCGACAGTGCTCTGTCCTCTTGGCAC
TACAGCCGGCAGTCAGACCGGTACCAGCCGCTGGTAGTGGCGCTGACGGG
GTCGACGGGCACCGGGAAGACGGAGACGGCGTGGGTGCTGGCGGACGCCT
TGCTGACCAAGCGCTGCCGCATCACGGGCGGCACGAGGGACATCCCCAGG
GGACTCCTGGTGCTCAAGTGA
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