mRNA_Ecto-sp13_S_contig60447.16681.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60447.16681.1
Unique NamemRNA_Ecto-sp13_S_contig60447.16681.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60447.16681.1 vs. uniprot
Match: A0A6H5K7J0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7J0_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.560e-27
Identity = 47/53 (88.68%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 KAWFSCGRETSNPNMCGNGRCPRCWRNRHLHLVNMEVECSNTWIGAPERVSGG 159
            KAWFSCGRE SNPNM  NGRCPRCWRNRH H VNME ECSNTWIGAPERVSGG
Sbjct:  225 KAWFSCGREKSNPNMSENGRCPRCWRNRHPHTVNMEGECSNTWIGAPERVSGG 277
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BLAST of mRNA_Ecto-sp13_S_contig60447.16681.1 vs. uniprot
Match: A0A6H5JQD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 7.020e-25
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 KAWFSCGRETSNPNMCGNGRCPRCWRNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPIEDAHNKPNIRWILAPPPFGTDVEIYSNRAALDAKKPGP 300
            + W+SCGR       C   RC RCW+ R     + E  C N W GAP R SGGTGT+RG P+E A    N RW+ AP P GTDVEI+    AL A++PGP
Sbjct:  204 RRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPN-NRRWMFAPYPCGTDVEIFFTPDALAAQRPGP 302
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BLAST of mRNA_Ecto-sp13_S_contig60447.16681.1 vs. uniprot
Match: A0A6H5KYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYQ6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.870e-24
Identity = 49/100 (49.00%), Postives = 59/100 (59.00%), Query Frame = 1 
Query:    1 KAWFSCGRETSNPNMCGNGRCPRCWRNRHLHLVNMEVECSNTWIGAPERVSGGTGTIRGAPIEDAHNKPNIRWILAPPPFGTDVEIYSNRAALDAKKPGP 300
            + W+SCGR       C   RC RCW+ R     + E  C N W GAP R SGGTGT+RG P+E A    N RW+ AP P GTDVEI+    AL A++PGP
Sbjct:  825 RRWYSCGRPHGEEARCSGLRCIRCWKFRVNGFRHTEARCFNNWTGAPARASGGTGTVRGCPVEMAEPN-NRRWMFAPYPCGTDVEIFFTPDALAAQRPGP 923
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60447.16681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K7J0_9PHAE2.560e-2788.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQD2_9PHAE7.020e-2549.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KYQ6_9PHAE1.870e-2449.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60447contigEcto-sp13_S_contig60447:152..451 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size300
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.2214868-CDS-Ecto-sp13_S_contig60447:151..4511681463842.2214868-CDS-Ecto-sp13_S_contig60447:151..451Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60447 152..451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60447.16681.1prot_Ecto-sp13_S_contig60447.16681.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60447 152..451 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60447.16681.1

>prot_Ecto-sp13_S_contig60447.16681.1 ID=prot_Ecto-sp13_S_contig60447.16681.1|Name=mRNA_Ecto-sp13_S_contig60447.16681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
KAWFSCGRETSNPNMCGNGRCPRCWRNRHLHLVNMEVECSNTWIGAPERV
SGGTGTIRGAPIEDAHNKPNIRWILAPPPFGTDVEIYSNRAALDAKKPGP
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mRNA from alignment at Ecto-sp13_S_contig60447:152..451+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60447.16681.1 ID=mRNA_Ecto-sp13_S_contig60447.16681.1|Name=mRNA_Ecto-sp13_S_contig60447.16681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60447:152..451+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCATGGTTCTCGTGCGGCAGGGAGACGAGCAACCCCAACATGTGCGG
CAACGGCCGCTGTCCTCGTTGTTGGCGCAATCGACACCTGCATCTCGTCA
ACATGGAGGTCGAGTGCAGCAACACGTGGATCGGCGCCCCTGAGAGGGTT
TCTGGCGGCACAGGCACCATCAGAGGGGCGCCGATCGAAGACGCGCACAA
CAAACCCAACATCCGGTGGATTTTGGCCCCCCCGCCGTTCGGAACGGATG
TCGAGATCTACTCCAATCGGGCGGCCCTGGACGCCAAGAAGCCTGGCCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60447:152..451+

>mRNA_Ecto-sp13_S_contig60447.16681.1 ID=mRNA_Ecto-sp13_S_contig60447.16681.1|Name=mRNA_Ecto-sp13_S_contig60447.16681.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60447:152..451+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCATGGTTCTCGTGCGGCAGGGAGACGAGCAACCCCAACATGTGCGG
CAACGGCCGCTGTCCTCGTTGTTGGCGCAATCGACACCTGCATCTCGTCA
ACATGGAGGTCGAGTGCAGCAACACGTGGATCGGCGCCCCTGAGAGGGTT
TCTGGCGGCACAGGCACCATCAGAGGGGCGCCGATCGAAGACGCGCACAA
CAAACCCAACATCCGGTGGATTTTGGCCCCCCCGCCGTTCGGAACGGATG
TCGAGATCTACTCCAATCGGGCGGCCCTGGACGCCAAGAAGCCTGGCCCT
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