mRNA_Ecto-sp13_S_contig6044.16679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI) HSP 1 Score: 758 bits (1956), Expect = 6.880e-268 Identity = 518/651 (79.57%), Postives = 528/651 (81.11%), Query Frame = 1
Query: 28 MPKCPFKNTGGAPAEQVPITDAPHAERRPG----GVWGDEEEPLSCCPKEKMTTDAHPEEXXXXXXXXXQLSVLPRGSEXXXXXXXXXXXXXXXXXXXRRRTTPLPVKLVTCGWATAWLSAALVGLVVVVMGIGRHNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGASTATREGGDGDESAGQPGGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESH-SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGG-KDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSS--------EVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEIAGASGS 1938
MPKC FKN GG PAEQVPI DA HA RR G GV GDEEEPLSCC KEK+TTDA+PE XXXXXXXQLS L RG + RRRTTP+PVKLVT GWATAWL AALVGLVVVVMGIGR NPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EGASTATR DG+ESAGQPGGVHRLVSDCARQLVLPGF CDEPVL DQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSV GG+SAAVRDALGF SSTYGSDNNYDGDD SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQ AVATDGPTAAAL+TCRDATRELVEVAA XXXXXXXXXXXXXXXXXXX KDPSLSEA QV VNADG+RDG+ADKKLRGG EV VHESDGH SN XXXXXXXXXXXXXXXXXXXX LQNNPFNPGSE DYFLQQLHRIQEQVIDEAA XXXXXXXXXX RVFLLRDRDSLY SMSCYRIDRSIHFHEPVKLVEGKMLWHLV+IAGASGS
Sbjct: 1 MPKCLFKNAGGVPAEQVPIPDASHAGRRRGDVRGGVRGDEEEPLSCCAKEKITTDANPE---XXXXXXXQLSGLLRGWDPLPGAKEGDVTTDASPEGDRRRTTPVPVKLVTWGWATAWLCAALVGLVVVVMGIGRDNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EGASTATRXXXDGNESAGQPGGVHRLVSDCARQLVLPGFGCDEPVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNX---XXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXX-----RVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLVDIAGASGS 637
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE) HSP 1 Score: 718 bits (1854), Expect = 2.370e-252 Identity = 497/654 (75.99%), Postives = 510/654 (77.98%), Query Frame = 1
Query: 97 HAERRPGGVWGDEEEPLSCCPKEKMTTDAHPEEXXXXXXXXXQ---LSVLPRGSEXXXXXXXXXXXXXXXXXXXRRRTTPLPVKLVTCGWATAWL--SAALVGLVVVVMGIGRHNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------EGASTATREGGDGDESAGQPGGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEIAGASGS 1938
H ERR G V GDEEEPLSCCP EKMTTDA+P+EXXXXXXXXX LS L RG E XXXXX RRRTTP+PVKLVT GWATAWL +AALVGLVVVVMGIGR+NPPVDWSAWTE ARSAXXXXXXXXXXXXXXXXX X XXXXXXXXXX EGASTA R DGDE+AGQPGGVHRLVSDCARQL+LPGFSCDEPVLQDQYRVPLMESG+ASCGFET MPDEKLLDLA KYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGF SSTYGS NN DG E+ SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVA GPTAAALETCRDATRELVEVAA XXXXXXXXX G +PSLSEATG+GG GQVVVNADG+RDG+ADKKLRGG GVSSEV VHESDGH XXXXXXXXXXXXXXXXXXX LQNNPFNP SE DYFLQQLHRIQEQVIDEAA XXXXXXXXXXX RVFLLRDRDSLY SMSCYRID SIHFHEPVKLVEGKMLWHLVEIAGASGS
Sbjct: 10 HQERRRGDVRGDEEEPLSCCPTEKMTTDANPDEXXXXXXXXXXXXXLSGLLRGWEPLPRLKEGDVTXXXXXEEDRRRTTPVPVKLVTWGWATAWLCAAAALVGLVVVVMGIGRNNPPVDWSAWTEGARSAXXXXXXXXXXXXXXXXXQWRXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGDFAGGGGEGASTARRGXXDGDEAAGQPGGVHRLVSDCARQLMLPGFSCDEPVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDV-----GNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXX-XXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXX----------------RVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEIAGASGS 641
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE) HSP 1 Score: 194 bits (494), Expect = 4.140e-51 Identity = 154/445 (34.61%), Postives = 193/445 (43.37%), Query Frame = 1
Query: 631 GVHRLVSDCARQLVLPGFSCDE---PVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISA---AVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNAD---GKRD-------GVADKKLRGGD-GVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 1914
GV RLV+ CA +L L C + P QD YR+ M SG CGFE R+ E + D+ASKY F FIGDST+RRL ESFVSI +GR STHPVV I+ S G+LKV F WAP CS + A V DA+ + + +R VI TAFGVHDA EL+ A + Y LPQ+ V DG AAAL CRDAT +LV AA G P + E G + N G+ + G+ +RGG G E + S +QNN + PGS ++ F + LHRIQ Q + E +FL+ D LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 68 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAV--------------------LAAKDGKRAVIITAFGVHDAFELQHAANG-HGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAA-----------------TAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDAS--------------------APPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGE---------------------WEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLL 433
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI) HSP 1 Score: 180 bits (456), Expect = 1.690e-46 Identity = 141/437 (32.27%), Postives = 188/437 (43.02%), Query Frame = 1
Query: 622 QPGGVHRLVSDCARQLVLPGFSC---DEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXL-QNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEI 1920
+P V LV DCAR+L + G C + PV++D YR+P MESG CGFE R P+E L D+ASK+ F FIGDST RRL ESFVSI +G+ S H +VH +D S G+L+ F WAP C + A + + D +RTVI TAFGVHD+ EL + Y LP + V A L C+ T +LV+ AA +V+ AD A+K G S+ VH S ++ S+ T L QNN + P S +D +L++L RIQ + E ++L+ D SL+R++SCYR IHFHEPVKLVEGKMLW L+ +
Sbjct: 80 RPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVM----------------DGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAA--------------------------------------KVMAWADP----TAEK------GQWSKA-VHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQE-----------------------WEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLAL 427
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI) HSP 1 Score: 147 bits (370), Expect = 2.480e-34 Identity = 127/404 (31.44%), Postives = 167/404 (41.34%), Query Frame = 1
Query: 751 CGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVD---GGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRD------------GVADKKLRGGD-GVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 1914
C + R+ + + +ASKY F IGDST+RRL ESFVSI +GR S H + D S G+LKV F WAP CS G + A+V DA+ + DG +R VI TA+GVHDA EL A + Y LPQ+ V DG AAAL CRD T +LV AA G + P + E G G + + N K + G+ +RGG G +E T+ +QNN + PGS ++ F + LH IQ QV+ E +FL+ + LY ++SCYR IHF EPVKL+EGKMLW L+
Sbjct: 78 CVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAK---------DG-----------KRAVIITAYGVHDAFELHHAANG-HGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAA-----------------TAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTL-------------------LGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGE---------------------WEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLL 403
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI) HSP 1 Score: 126 bits (317), Expect = 2.390e-28 Identity = 80/215 (37.21%), Postives = 103/215 (47.91%), Query Frame = 1
Query: 628 GGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVA 1272
GG+H LV CA +L LPG++C++ +R+PLM SGD CGFETR+P DLAS+Y F+GDST+RRL ESF+SI +G S H H +++ L+V F WAP C R S + DG RR +I TAFGV D++ G AAL C DA R LV+VA
Sbjct: 63 GGLHDLVRQCAERLDLPGYTCEKNSSSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYC----------RQVKNESLHEIMDNQALDGG----------RRAIIVTAFGVWDSSH-------------------------GGGDEAALGVCADAVRSLVQVA 232
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE) HSP 1 Score: 103 bits (257), Expect = 1.810e-20 Identity = 70/172 (40.70%), Postives = 88/172 (51.16%), Query Frame = 1
Query: 784 LLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCC---------SVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVA 1272
L DL+S+Y F F+GDSTTRRLAESFVSI++G+AS H VVH RIDMS G LKV F WAP C S+D ++A +R+ GD R +I TAFGVH+A L + P + + AAAL C + T +LV VA
Sbjct: 79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRN----------------GD----------ARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSS--HDTFREEDAEAAALNVCEEVTSQLVHVA 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig6044.16679.1 >prot_Ecto-sp13_S_contig6044.16679.1 ID=prot_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=638bp MPKCPFKNTGGAPAEQVPITDAPHAERRPGGVWGDEEEPLSCCPKEKMTTback to top mRNA from alignment at Ecto-sp13_S_contig6044:3933..8468- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig6044.16679.1 ID=mRNA_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6044:3933..8468- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6044:3933..8468- >mRNA_Ecto-sp13_S_contig6044.16679.1 ID=mRNA_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6044:3933..8468- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |