mRNA_Ecto-sp13_S_contig6044.16679.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6044.16679.1
Unique NamemRNA_Ecto-sp13_S_contig6044.16679.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7FUL3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL3_ECTSI)

HSP 1 Score: 758 bits (1956), Expect = 6.880e-268
Identity = 518/651 (79.57%), Postives = 528/651 (81.11%), Query Frame = 1
Query:   28 MPKCPFKNTGGAPAEQVPITDAPHAERRPG----GVWGDEEEPLSCCPKEKMTTDAHPEEXXXXXXXXXQLSVLPRGSEXXXXXXXXXXXXXXXXXXXRRRTTPLPVKLVTCGWATAWLSAALVGLVVVVMGIGRHNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGASTATREGGDGDESAGQPGGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESH-SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGG-KDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSS--------EVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEIAGASGS 1938
            MPKC FKN GG PAEQVPI DA HA RR G    GV GDEEEPLSCC KEK+TTDA+PE   XXXXXXXQLS L RG +                   RRRTTP+PVKLVT GWATAWL AALVGLVVVVMGIGR NPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   EGASTATR   DG+ESAGQPGGVHRLVSDCARQLVLPGF CDEPVL DQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSV GG+SAAVRDALGF SSTYGSDNNYDGDD        SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQ AVATDGPTAAAL+TCRDATRELVEVAA   XXXXXXXXXXXXXXXXXXX   KDPSLSEA       QV VNADG+RDG+ADKKLRGG             EV VHESDGH SN      XXXXXXXXXXXXXXXXXXXX   LQNNPFNPGSE DYFLQQLHRIQEQVIDEAA                  XXXXXXXXXX     RVFLLRDRDSLY SMSCYRIDRSIHFHEPVKLVEGKMLWHLV+IAGASGS
Sbjct:    1 MPKCLFKNAGGVPAEQVPIPDASHAGRRRGDVRGGVRGDEEEPLSCCAKEKITTDANPE---XXXXXXXQLSGLLRGWDPLPGAKEGDVTTDASPEGDRRRTTPVPVKLVTWGWATAWLCAALVGLVVVVMGIGRDNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EGASTATRXXXDGNESAGQPGGVHRLVSDCARQLVLPGFGCDEPVLADQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVGGGVSAAVRDALGFRSSTYGSDNNYDGDDXXXXXXXXSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQAAVATDGPTAAALQTCRDATRELVEVAAXXXXXXXXXXXXXXXXXXXXXXXXXKDPSLSEAXXXXXXXQVAVNADGRRDGIADKKLRGGXXXXXXXXXXXXXEVAVHESDGHGSNX---XXXXXXXXXXXXXXXXXXXXXXVFLLQNNPFNPGSEHDYFLQQLHRIQEQVIDEAAAEQAAAKQGCEQHQDCEQXXXXXXXXXX-----RVFLLRDRDSLYSSMSCYRIDRSIHFHEPVKLVEGKMLWHLVDIAGASGS 637          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5JGU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU9_9PHAE)

HSP 1 Score: 718 bits (1854), Expect = 2.370e-252
Identity = 497/654 (75.99%), Postives = 510/654 (77.98%), Query Frame = 1
Query:   97 HAERRPGGVWGDEEEPLSCCPKEKMTTDAHPEEXXXXXXXXXQ---LSVLPRGSEXXXXXXXXXXXXXXXXXXXRRRTTPLPVKLVTCGWATAWL--SAALVGLVVVVMGIGRHNPPVDWSAWTEDARSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------EGASTATREGGDGDESAGQPGGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEIAGASGS 1938
            H ERR G V GDEEEPLSCCP EKMTTDA+P+EXXXXXXXXX    LS L RG E           XXXXX   RRRTTP+PVKLVT GWATAWL  +AALVGLVVVVMGIGR+NPPVDWSAWTE ARSAXXXXXXXXXXXXXXXXX   X XXXXXXXXXX                                   EGASTA R   DGDE+AGQPGGVHRLVSDCARQL+LPGFSCDEPVLQDQYRVPLMESG+ASCGFET MPDEKLLDLA KYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGF SSTYGS NN DG      E+ SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVA  GPTAAALETCRDATRELVEVAA   XXXXXXXXX           G +PSLSEATG+GG GQVVVNADG+RDG+ADKKLRGG GVSSEV VHESDGH         XXXXXXXXXXXXXXXXXXX    LQNNPFNP SE DYFLQQLHRIQEQVIDEAA      XXXXXXXXXXX                RVFLLRDRDSLY SMSCYRID SIHFHEPVKLVEGKMLWHLVEIAGASGS
Sbjct:   10 HQERRRGDVRGDEEEPLSCCPTEKMTTDANPDEXXXXXXXXXXXXXLSGLLRGWEPLPRLKEGDVTXXXXXEEDRRRTTPVPVKLVTWGWATAWLCAAAALVGLVVVVMGIGRNNPPVDWSAWTEGARSAXXXXXXXXXXXXXXXXXQWRXRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAGDFAGGGGEGASTARRGXXDGDEAAGQPGGVHRLVSDCARQLMLPGFSCDEPVLQDQYRVPLMESGNASCGFETLMPDEKLLDLALKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFRSSTYGSGNNNDGXXXXXXENGSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVAAQGPTAAALETCRDATRELVEVAAAXXXXXXXXXXXDGGGDV-----GNNPSLSEATGEGGEGQVVVNADGRRDGIADKKLRGGGGVSSEVAVHESDGHXXXXXX-XXXXXXXXXXXXXXXXXXXXXLVFLLQNNPFNPRSELDYFLQQLHRIQEQVIDEAAAKQGCEXXXXXXXXXXX----------------RVFLLRDRDSLYSSMSCYRIDGSIHFHEPVKLVEGKMLWHLVEIAGASGS 641          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5L6U4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U4_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 4.140e-51
Identity = 154/445 (34.61%), Postives = 193/445 (43.37%), Query Frame = 1
Query:  631 GVHRLVSDCARQLVLPGFSCDE---PVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISA---AVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNAD---GKRD-------GVADKKLRGGD-GVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 1914
            GV RLV+ CA +L L    C +   P  QD YR+  M SG   CGFE R+  E + D+ASKY F FIGDST+RRL ESFVSI +GR STHPVV   I+ S G+LKV F WAP CS    + A    V DA+                    + +   +R VI TAFGVHDA EL+ A      +  Y   LPQ+ V  DG  AAAL  CRDAT +LV  AA                      G   P + E    G     + N     G+ +       G+    +RGG  G   E  +  S                                   +QNN + PGS ++ F + LHRIQ Q + E                                    +FL+ D   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:   68 GVRRLVTTCALRLELSADVCGKGEVPDPQDAYRLHHMHSGGLPCGFEERLGKEAMEDIASKYSFHFIGDSTSRRLGESFVSIFTGRGSTHPVVQRDINFSSGNLKVHFYWAPLCSGPESVGAMLTTVMDAV--------------------LAAKDGKRAVIITAFGVHDAFELQHAANG-HGSPSYQSTLPQDIVEKDGMRAAALGACRDATTQLVRTAAA-----------------TAVPGTAAPPVEEEQSPGDAQHQLPNVSTQVGRHETSQKQAAGIPPNNVRGGSVGAGKEDALDAS--------------------APPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHRIQRQAVGE---------------------WEASEGSKGDDGERGLFLVDDSVGLYGNLSCYRSANPIHFDEPVKLMEGKMLWDLL 433          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7G0T6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T6_ECTSI)

HSP 1 Score: 180 bits (456), Expect = 1.690e-46
Identity = 141/437 (32.27%), Postives = 188/437 (43.02%), Query Frame = 1
Query:  622 QPGGVHRLVSDCARQLVLPGFSC---DEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRDGVADKKLRGGDGVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXL-QNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLVEI 1920
            +P  V  LV DCAR+L + G  C   + PV++D YR+P MESG   CGFE R P+E L D+ASK+ F FIGDST RRL ESFVSI +G+ S H +VH  +D S G+L+  F WAP C     + A +   +                D         +RTVI TAFGVHD+ EL    +       Y   LP + V       A L  C+  T +LV+ AA                                       +V+  AD      A+K      G  S+  VH S   ++ S+  T                        L QNN + P S +D +L++L RIQ   + E                                    ++L+ D  SL+R++SCYR    IHFHEPVKLVEGKMLW L+ +
Sbjct:   80 RPAQVRTLVHDCARRLKVAGDLCGHSETPVVEDDYRLPHMESGVLPCGFEERTPNEVLEDMASKFTFHFIGDSTIRRLGESFVSIFTGQGSKHDMVHSDLDFSTGNLETRFYWAPFCFGSESVGAKLATVM----------------DGVKTAKRGDKRTVIITAFGVHDSYELPLLVKGSASTS-YMDALPPDFVDNGSVRTATLGACQATTAQLVQAAAA--------------------------------------KVMAWADP----TAEK------GQWSKA-VHASPNTTTRSTTETNGVSFSFGAPGTTAATDPTPPLVFLMQNNRYPPNSPEDNYLEELRRIQRGEVQE-----------------------WEAGEGNEDAEGGIYLVDDSVSLFRNLSCYRERNPIHFHEPVKLVEGKMLWDLLAL 427          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7G0V6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V6_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.480e-34
Identity = 127/404 (31.44%), Postives = 167/404 (41.34%), Query Frame = 1
Query:  751 CGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVD---GGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVAAEGGXXXXXXXXXXXXXXXXXXXGGKDPSLSEATGQGGGGQVVVNADGKRD------------GVADKKLRGGD-GVSSEVTVHESDGHSSNSSRSTEXXXXXXXXXXXXXXXXXXXXXXXLQNNPFNPGSEQDYFLQQLHRIQEQVIDEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRVFLLRDRDSLYRSMSCYRIDRSIHFHEPVKLVEGKMLWHLV 1914
            C  + R+  + +  +ASKY F  IGDST+RRL ESFVSI +GR S H +     D S G+LKV F WAP CS     G + A+V DA+  +          DG           +R VI TA+GVHDA EL  A      +  Y   LPQ+ V  DG  AAAL  CRD T +LV  AA                      G + P + E    G G + + N   K +            G+    +RGG  G  +E T+                                      +QNN + PGS ++ F + LH IQ QV+ E                                    +FL+ +   LY ++SCYR    IHF EPVKL+EGKMLW L+
Sbjct:   78 CVSQERLGKDAMEYIASKYSFHLIGDSTSRRLGESFVSIFTGRGSIHRIAQRDRDFSSGNLKVHFYWAPLCSGPESVGAMLASVMDAVRAAK---------DG-----------KRAVIITAYGVHDAFELHHAANG-HGSPSYKSALPQDVVEKDGMRAAALGACRDTTTQLVRAAAA-----------------TAVPGTEAPPVEEEQSPGDGRRQLPNVSTKVEVGPHETSEKQAAGIPPHNVRGGSVGAGNEDTL-------------------LGASAPPAASGPLQPLLFLMQNNRYPPGSVENAFQEDLHIIQRQVVGE---------------------WEASEGSKGDGGERGLFLVDNSVGLYGNLSCYRNANPIHFDEPVKLMEGKMLWDLL 403          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: D7FZD7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD7_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.390e-28
Identity = 80/215 (37.21%), Postives = 103/215 (47.91%), Query Frame = 1
Query:  628 GGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPDEKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVA 1272
            GG+H LV  CA +L LPG++C++      +R+PLM SGD  CGFETR+P     DLAS+Y   F+GDST+RRL ESF+SI +G  S H   H   +++   L+V F WAP C          R     S      +   DG           RR +I TAFGV D++                           G   AAL  C DA R LV+VA
Sbjct:   63 GGLHDLVRQCAERLDLPGYTCEKNSSSADFRIPLMGSGDLPCGFETRLPTSTFEDLASRYAIHFMGDSTSRRLVESFISIATGNRSAHVYYHESRNLTVDGLQVNFHWAPYC----------RQVKNESLHEIMDNQALDGG----------RRAIIVTAFGVWDSSH-------------------------GGGDEAALGVCADAVRSLVQVA 232          
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Match: A0A6H5JFC3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFC3_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.810e-20
Identity = 70/172 (40.70%), Postives = 88/172 (51.16%), Query Frame = 1
Query:  784 LLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRGDLKVTFLWAPCC---------SVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESHSPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAALETCRDATRELVEVA 1272
            L DL+S+Y F F+GDSTTRRLAESFVSI++G+AS H VVH RIDMS G LKV F WAP C         S+D  ++A +R+                GD           R +I TAFGVH+A  L   +         P     +    +   AAAL  C + T +LV VA
Sbjct:   79 LEDLSSRYVFHFVGDSTTRRLAESFVSILTGQASPHFVVHERIDMSSGSLKVIFHWAPMCIDARSKIQASIDEIVAAQLRN----------------GD----------ARAIIITAFGVHNAHRLYGDQAGTLPRYTAPSS--HDTFREEDAEAAALNVCEEVTSQLVHVA 222          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6044.16679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FUL3_ECTSI6.880e-26879.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGU9_9PHAE2.370e-25275.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6U4_9PHAE4.140e-5134.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0T6_ECTSI1.690e-4632.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G0V6_ECTSI2.480e-3431.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZD7_ECTSI2.390e-2837.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFC3_9PHAE1.810e-2040.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6044contigEcto-sp13_S_contig6044:3933..8468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1941
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_004080.1
Cds size1914
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.1071408-CDS-Ecto-sp13_S_contig6044:3932..49371681463842.1071408-CDS-Ecto-sp13_S_contig6044:3932..4937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6044 3933..4937 -
1681463842.1190686-CDS-Ecto-sp13_S_contig6044:6100..62741681463842.1190686-CDS-Ecto-sp13_S_contig6044:6100..6274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6044 6101..6274 -
1681463842.1296296-CDS-Ecto-sp13_S_contig6044:7020..76801681463842.1296296-CDS-Ecto-sp13_S_contig6044:7020..7680Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6044 7021..7680 -
1681463842.140588-CDS-Ecto-sp13_S_contig6044:8366..84411681463842.140588-CDS-Ecto-sp13_S_contig6044:8366..8441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6044 8367..8441 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463842.1513436-UTR-Ecto-sp13_S_contig6044:8441..84681681463842.1513436-UTR-Ecto-sp13_S_contig6044:8441..8468Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6044 8442..8468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6044.16679.1prot_Ecto-sp13_S_contig6044.16679.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6044 3933..8441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6044.16679.1

>prot_Ecto-sp13_S_contig6044.16679.1 ID=prot_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=638bp
MPKCPFKNTGGAPAEQVPITDAPHAERRPGGVWGDEEEPLSCCPKEKMTT
DAHPEERQQRQQQQQQLSVLPRGSEPLARPKEEDITIDANPEEDRRRTTP
LPVKLVTCGWATAWLSAALVGLVVVVMGIGRHNPPVDWSAWTEDARSAAA
AAAAASTNATTSAGDLPPPAVAEDFAGGGGEGASTATREGGDGDESAGQP
GGVHRLVSDCARQLVLPGFSCDEPVLQDQYRVPLMESGDASCGFETRMPD
EKLLDLASKYEFLFIGDSTTRRLAESFVSIVSGRASTHPVVHHRIDMSRG
DLKVTFLWAPCCSVDGGISAAVRDALGFSSSTYGSDNNYDGDDEKDVESH
SPRRTVIFTAFGVHDATELRKAERDPELNQWYPMGLPQEAVATDGPTAAA
LETCRDATRELVEVAAEGGGAGAASWASAGGGGGDDGDGGKDPSLSEATG
QGGGGQVVVNADGKRDGVADKKLRGGDGVSSEVTVHESDGHSSNSSRSTE
AADGGGGGGGGGGGGPPPPLVFLLQNNPFNPGSEQDYFLQQLHRIQEQVI
DEAAAEQVAAKQGCEQQQDCKQQQRGGGGGGGGGGGGRVFLLRDRDSLYR
SMSCYRIDRSIHFHEPVKLVEGKMLWHLVEIAGASGS*
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mRNA from alignment at Ecto-sp13_S_contig6044:3933..8468-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6044.16679.1 ID=mRNA_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6044:3933..8468- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGGGCCACGTACGACAGTTATCAAATGCCGAAGTGCCCATTCAAGAA CACCGGCGGGGCTCCGGCAGAACAAGTTCCGATCACGGATGCTCCGCACG CGGTGAGTTCCCTTCCGGGGGTGTTTAGTTTCCCCCTTTATCGTAGGCGA TTCGTTCTGGAAGCTCGCGGTTGCGACGGCGCCGGTTGTTTTGGTAACGC TTCGCAGTACGCGTGATGTCTTCCCCTCAAAAACAAACCAACGCCACGAG AGGCTGGCTCGCTGGCTACGACGGTGACAATTGTGTTGGTATCGCTTTGC CGTAGGCGTGATGTTTTCCCCGGCGGAACCCGGCCAAACGGTGGGTTCTC TGGTTGTGACGGGTGACGGTTGTCTTGTGTGATTTTGTCTGGTGCGCTTG AAGGTGGTGAAGGGAGCTGTCTCGTGCTCGTATCTGGTGTCTAGCTTAGG CGAAAAAGAGCTTCGGGATGCTCCACACTGCTGCCACTGCTGTTGTCGAC GCTAGGTCCTCGCCGATTGCCATCGTCGCTACCCCGGTGCACGCAGTACA GACACGCGGACGGGTTTTGGACGACCAGGGTTTGTTTTTTTTAAACAGCG GCAGGTACTTACCCCAAGGGGACGACAGGGTATCTGGAGGGCAACATGCA GTCTCTTGAGCGAGCTTCGTCTGCACGCGGCGGAGCACTCTCTCACACAG TCACCTAATTCCTCCGCTTTTCTCGTTTTATTTTTTTTTTTGCCGCCTGC TCTCGATGGTCTCCATCCATGGCTGGCATGAACACCAGGAGCGGCGACCG GGGGGCGTGTGGGGGGATGAGGAGGAGCCGCTCTCCTGCTGCCCGAAGGA GAAGATGACCACGGATGCCCACCCGGAGGAGAGACAGCAGCGGCAGCAGC AGCAGCAGCAGCTGTCCGTCTTACCACGAGGTTCGGAGCCGCTCGCCCGC CCGAAGGAAGAGGACATCACAATAGATGCCAACCCGGAAGAAGACCGGCG ACGAACAACGCCGTTGCCGGTCAAGCTCGTGACCTGCGGCTGGGCGACCG CCTGGCTGAGCGCCGCCCTGGTGGGGCTGGTGGTGGTGGTGATGGGCATC GGCCGGCACAACCCTCCGGTGGACTGGTCGGCTTGGACAGAAGACGCCCG GTCAGCGGCGGCAGCAGCGGCGGCGGCGTCTACCAACGCGACGACAAGCG CTGGTGACCTCCCCCCCCCAGCAGTGGCGGAAGACTTCGCGGGGGGTGGA GGAGAAGGGGCTAGCACGGCTACGAGAGAGGGGGGCGACGGAGACGAATC AGCGGGGCAACCAGGGGGTGTGCATCGGCTGGTGTCCGATTGCGCGCGGC AGCTTGTGCTGCCCGGGTTCAGCTGCGACGAGCCGGTGCTTCAGGACCAG TACCGGGTGCCCTTGATGGAGTCCGGGGACGCGTCCTGCGGGTTCGAGGT GCGTTAGTCGGCGTGCTTGTCCCTCTCTCTTTTTCTCGCACTCTCTTTTT GTCCGTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTC TCTCTCTCCGTTGCCTAACGGGTACACAGCAAGCGAAATGACACCCGTGG GCATGAAACAGCGCCCTACATCGTTGTTCGGGCACACTGCCCTCTCGTAC TTTGACGTGTACAATTTTGACTTTTGACTAGTTAGGAGTTGAGTTTCAAG GCTCGATTGCTTCACTTTCCAGCGGGCGCCAAAATGAACTACACATGCTC GGAAATTTGTCGACGATATCTTTCCAGCACGATCTTTCGTTCTTGTCGGC ACCACAGGTTTTCTCCTGTGGTTCGAGCCCCGGTCCACAGCGGCATGACG TCCTGGCCAAACACGGCACTGTACACATCCATCTCTGACAACAGTTGCAT CGCTAACGTGTTCATTCTGCACGGGCTTGCTGGGTGCAGACGAGCGCAAG CATCAATCCTATTCGCGCGGAGAGAGCAGACGCACAGCGGTACACGTGTC GGTGTTTTAGCGGTAACCTGGCTGGACCCGCTTGGCGCTTCGCGAGGTTT AAAAAACGTAATTCATACACCATGTGAAGTAGAGAGGGAGGTTTTCGTAG CCCTAGCTTACCCAAGCTTAGTACCCGGAAGGCGAGGCTACTGACCTTGC TCTTGTTGTCCCTCGACCGCTCTCGCTCGCCCGCTCCCCCCCAGACCCGA ATGCCGGACGAGAAACTCTTGGACTTGGCCTCGAAGTACGAGTTCCTGTT CATCGGAGACAGCACGACTCGCAGGCTCGCGGAGAGCTTCGTGTCGATCG TGTCGGGGCGGGCGTCAACCCACCCGGTCGTGCACCACCGCATCGACATG TCCAGGGGGGACCTGAAGGTGGGAAGTCGCAGCACACGGGGTACCTATGG GTACCCATTGCGCACCTGAATGCCTAGCTTTTGATAAAAAAAAATCTGCC TGAACTTGTGAGCTCGCAGCACACGGGAACCTTACGAATCCATCATCCCT CTGAATATATAGCTGTTAAAAAAACACTTCAACCTGATCGTGTGAGCTCG CAGGAAAATGGGCACCCGTATCCCATCTGAATTGGTTGTATCACAGGGTA TTGAATTTGTGACTGGTACGTGATGTACCTTAATTGTCGGAGAGATGGCA CCCCCGTGTATTGTACGCGTTTATTTATAGCATATGTCTCCACAACCAGG GGGCGTTTTGTACCACTGCCGAAAAGGGTGGTCTTGGACACATCTCATCG GGGGCCTTCCTGAGAGGTAGTATCGGTTGGTGTTCGCACCCTCCTACACT GTTTTGGAGAAGTACGCTTAACAGAATACTCTAAGACGCACGTGCTACAT ATCCCTCCGACTCTCACGGGTACCCACAGAAGCAGCACTCTTTTTCGATT ACGACGAAATGCTGTGATCGCTCATTGAAAGCGACGAACAACAAAAAATG CAACTATTATCCGGTCCGAAAAAGGGTCATATTTTTACGTTCCAAGAACG TGGGGCAACGGGCATTGCTGTCCTCGACAGAAGGTGGGCGACCGTTTCGC CTGAAACATGGCAGGGCAGGGTGGTGCACTATGGCTTGCTTGCCGAAATA TCGACCATCATCATCGTCGGAGAACAACTACTGTGCAATAGCCGCCCGCC GGTCCAACTGAGTCCCCCGTTGCCCCCCCCTCAGCGCAGCTTCGATAAGT AGGGGGTGCGAGAGCGAGGGGGTGGAAAAACGAACCGGGTGAAAACACAT ATTCATCGCGATGGTAATGATTAGGTCGGCAGTGATGAGGATGGCCACTT GGTCCCCGGGTTGTTTCCCCAAACCTGTCCGTGTGACAGTGAACGCCGCA GGCTAACAATTTATCCTGAACCCTTAAAATTTATGGGTTCGTTGTGGTAT ATCGAAAAATACACACTACAACAATGACGACGTCCACATGGTCTCCCTGG TTACCTCCAAAACCTGACGCGCGTCTCCGGCCTCCGGTCTCGATCGTTAC TGCTGCTTCGTTTTCGCGGCGGTGCTCGAAGGTCACGTTCCTGTGGGCTC CTTGCTGCTCCGTGGACGGCGGGATCAGCGCCGCCGTACGGGACGCCCTG GGCTTCAGCAGTAGCACGTACGGTAGCGACAACAACTACGACGGCGACGA TGAAAAGGACGTTGAGAGCCACAGCCCCAGGCGCACGGTCATTTTCACGG CGTTCGGGGTCCACGACGCCACGGAGCTGCGGAAGGCCGAGAGGGACCCG GAGCTGAACCAGTGGTACCCGATGGGTCTGCCGCAGGAGGCGGTGGCGAC GGACGGGCCGACGGCGGCCGCCCTCGAGACCTGCCGGGACGCCACCCGCG AGCTCGTCGAGGTGGCGGCGGAGGGCGGGGGGGCGGGGGCGGCATCGTGG GCATCAGCCGGAGGCGGCGGCGGCGACGACGGCGACGGCGGTAAAGATCC GTCTTTATCGGAGGCAACAGGACAAGGAGGAGGAGGTCAGGTAGTAGTCA ACGCGGACGGCAAGAGGGACGGCGTCGCGGACAAGAAGCTCCGGGGCGGC GATGGCGTGTCGTCCGAGGTGACGGTGCACGAGTCGGACGGACACAGCAG CAATAGCAGTAGGAGCACCGAGGCCGCGGACGGCGGCGGCGGCGGCGGCG GTGGTGGTGGTGGCGGGCCTCCTCCACCCCTGGTCTTCCTGCTGCAGAAC AACCCGTTCAACCCGGGCAGCGAGCAGGACTACTTCCTGCAGCAGCTGCA CAGGATCCAGGAGCAGGTCATAGACGAAGCTGCGGCGGAACAAGTAGCGG CGAAACAAGGCTGCGAACAGCAACAAGACTGCAAACAGCAACAACGAGGA GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGTGTTCTTGCTGCG GGACAGAGATAGCCTGTACAGGAGCATGTCGTGCTACCGTATCGACCGCT CGATCCACTTCCACGAGCCGGTCAAGCTCGTCGAGGGGAAGATGCTGTGG CATCTGGTTGAGATTGCTGGGGCAAGCGGGAGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6044:3933..8468-

>mRNA_Ecto-sp13_S_contig6044.16679.1 ID=mRNA_Ecto-sp13_S_contig6044.16679.1|Name=mRNA_Ecto-sp13_S_contig6044.16679.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6044:3933..8468- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGAAGTGCCCATTCAAGAACACCGGCGGGGCTCCGGCAGAACAAGT
TCCGATCACGGATGCTCCGCACGCGGAGCGGCGACCGGGGGGCGTGTGGG
GGGATGAGGAGGAGCCGCTCTCCTGCTGCCCGAAGGAGAAGATGACCACG
GATGCCCACCCGGAGGAGAGACAGCAGCGGCAGCAGCAGCAGCAGCAGCT
GTCCGTCTTACCACGAGGTTCGGAGCCGCTCGCCCGCCCGAAGGAAGAGG
ACATCACAATAGATGCCAACCCGGAAGAAGACCGGCGACGAACAACGCCG
TTGCCGGTCAAGCTCGTGACCTGCGGCTGGGCGACCGCCTGGCTGAGCGC
CGCCCTGGTGGGGCTGGTGGTGGTGGTGATGGGCATCGGCCGGCACAACC
CTCCGGTGGACTGGTCGGCTTGGACAGAAGACGCCCGGTCAGCGGCGGCA
GCAGCGGCGGCGGCGTCTACCAACGCGACGACAAGCGCTGGTGACCTCCC
CCCCCCAGCAGTGGCGGAAGACTTCGCGGGGGGTGGAGGAGAAGGGGCTA
GCACGGCTACGAGAGAGGGGGGCGACGGAGACGAATCAGCGGGGCAACCA
GGGGGTGTGCATCGGCTGGTGTCCGATTGCGCGCGGCAGCTTGTGCTGCC
CGGGTTCAGCTGCGACGAGCCGGTGCTTCAGGACCAGTACCGGGTGCCCT
TGATGGAGTCCGGGGACGCGTCCTGCGGGTTCGAGACCCGAATGCCGGAC
GAGAAACTCTTGGACTTGGCCTCGAAGTACGAGTTCCTGTTCATCGGAGA
CAGCACGACTCGCAGGCTCGCGGAGAGCTTCGTGTCGATCGTGTCGGGGC
GGGCGTCAACCCACCCGGTCGTGCACCACCGCATCGACATGTCCAGGGGG
GACCTGAAGGTCACGTTCCTGTGGGCTCCTTGCTGCTCCGTGGACGGCGG
GATCAGCGCCGCCGTACGGGACGCCCTGGGCTTCAGCAGTAGCACGTACG
GTAGCGACAACAACTACGACGGCGACGATGAAAAGGACGTTGAGAGCCAC
AGCCCCAGGCGCACGGTCATTTTCACGGCGTTCGGGGTCCACGACGCCAC
GGAGCTGCGGAAGGCCGAGAGGGACCCGGAGCTGAACCAGTGGTACCCGA
TGGGTCTGCCGCAGGAGGCGGTGGCGACGGACGGGCCGACGGCGGCCGCC
CTCGAGACCTGCCGGGACGCCACCCGCGAGCTCGTCGAGGTGGCGGCGGA
GGGCGGGGGGGCGGGGGCGGCATCGTGGGCATCAGCCGGAGGCGGCGGCG
GCGACGACGGCGACGGCGGTAAAGATCCGTCTTTATCGGAGGCAACAGGA
CAAGGAGGAGGAGGTCAGGTAGTAGTCAACGCGGACGGCAAGAGGGACGG
CGTCGCGGACAAGAAGCTCCGGGGCGGCGATGGCGTGTCGTCCGAGGTGA
CGGTGCACGAGTCGGACGGACACAGCAGCAATAGCAGTAGGAGCACCGAG
GCCGCGGACGGCGGCGGCGGCGGCGGCGGTGGTGGTGGTGGCGGGCCTCC
TCCACCCCTGGTCTTCCTGCTGCAGAACAACCCGTTCAACCCGGGCAGCG
AGCAGGACTACTTCCTGCAGCAGCTGCACAGGATCCAGGAGCAGGTCATA
GACGAAGCTGCGGCGGAACAAGTAGCGGCGAAACAAGGCTGCGAACAGCA
ACAAGACTGCAAACAGCAACAACGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAAGGGTGTTCTTGCTGCGGGACAGAGATAGCCTGTACAGG
AGCATGTCGTGCTACCGTATCGACCGCTCGATCCACTTCCACGAGCCGGT
CAAGCTCGTCGAGGGGAAGATGCTGTGGCATCTGGTTGAGATTGCTGGGG
CAAGCGGGAGCTAG
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