mRNA_Ecto-sp13_S_contig604.16674.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig604.16674.1
Unique NamemRNA_Ecto-sp13_S_contig604.16674.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A6H5KYW5_9PHAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYW5_9PHAE)

HSP 1 Score: 350 bits (899), Expect = 1.130e-116
Identity = 239/295 (81.02%), Postives = 244/295 (82.71%), Query Frame = 1 
Query:    4 GGATPMQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHAAAVDQEAQQQMHLMAMQHALGQHMQNTLLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-LMQADPQMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG----VAAAGQGEADIEQANAMAAMQSAMMSNPAMLQ 873
            GGATPMQQLQLQQA IQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIF+LEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHA A+DQ+AQ QMHLMAMQH+LGQHMQNTLLQXXXXXXXXXXXXXXXXXXXXX                         LMQADPQMA            X      XXXXXXXXXX     VAAAGQGEADIEQANA+AAMQSAMMSNPAMLQ
Sbjct:    5 GGATPMQQLQLQQAQIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFILEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHATAIDQDAQLQMHLMAMQHSLGQHMQNTLLQXXXXXXXXXXXXXXXXXXXXXSAEGNGAAGATPEALAAQAALQQQALMQADPQMAMQLQVLWQQQAQXAMFLQQXXXXXXXXXXXXXXXVAAAGQGEADIEQANAIAAMQSAMMSNPAMLQ 299
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: D8LGF1_ECTSI (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF1_ECTSI)

HSP 1 Score: 323 bits (829), Expect = 5.540e-108
Identity = 169/169 (100.00%), Postives = 169/169 (100.00%), Query Frame = 1 
Query:    1 AGGATPMQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHAAAVDQEAQQQMHLMAMQHALGQHM 507
            AGGATPMQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHAAAVDQEAQQQMHLMAMQHALGQHM
Sbjct:    4 AGGATPMQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHAAAVDQEAQQQMHLMAMQHALGQHM 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A7S2CAV2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CAV2_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.460e-37
Identity = 84/147 (57.14%), Postives = 99/147 (67.35%), Query Frame = 1 
Query:   16 PMQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIA-EAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK---KDDVGHAAAV 444
            PMQQL                FW     E+  IDP+++D+   ELPLARIKKIM+ ED++  E G  RFMI+AEAP++ AKACEIF LE+ M A + T ENKRRTLQRNDI MAVSK DTYDFLIDIVPR+ +K   KDDVG A  V
Sbjct:   16 PMQQLXXXXXXXXXXXXXXAAFWQSRMQEINMIDPDQKDWSQPELPLARIKKIMKSEDEVKLELGGQRFMISAEAPVMFAKACEIFALELTMLAWNHTEENKRRTLQRNDIVMAVSKNDTYDFLIDIVPRDNVKPSKKDDVGSAMPV 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A7S3YAQ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YAQ4_HETAK)

HSP 1 Score: 137 bits (346), Expect = 9.570e-36
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 1 
Query:   58 EQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDI-AEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREE 408
            ++ R+  FWN+   E+  IDPEKEDFK  ELPLARIKKIMRLE+++ +E G  RFMI+AEAP+++AKA  +F  E+ +RA + T E KRRTLQR D+AMA++K+D YDFLIDIVPREE
Sbjct:   37 QEVRLQQFWNDHLVEIGGIDPEKEDFKTLELPLARIKKIMRLEEEVQSELGGFRFMISAEAPVLLAKAAALFTGELTIRAATHTEEAKRRTLQRQDLAMAMTKSDMYDFLIDIVPREE 154
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: T0Q5X3_SAPDV (CBFD_NFYB_HMF domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q5X3_SAPDV)

HSP 1 Score: 139 bits (351), Expect = 1.530e-35
Identity = 70/115 (60.87%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:   70 INDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK 414
            ++ FW     E++QIDPE +DFK H+LPLARIKKIM+ ++D+        MI+AEAP++ AKACE+F+LE+++RA   T ENKRRTLQRNDIAMA++KTDT+DFLIDIVPRE++K
Sbjct:   33 LHAFWQSQIHEISQIDPEVQDFKTHQLPLARIKKIMKSDEDVR-------MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDTFDFLIDIVPREDIK 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A2D4BX92_PYTIN (Nuclear transcription factor Y subunit C-4 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX92_PYTIN)

HSP 1 Score: 139 bits (350), Expect = 2.590e-35
Identity = 72/130 (55.38%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:   25 QLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK 414
            QLQ Q+A +Q +  ++  FW     E++QIDP   DFK H+LPLARIKKIM+ +DD+        MI+AEAP++ AKACE+F+LE+++RA   T ENKRRTLQR+DIA A+SK+D +DFLIDIVPR+++K
Sbjct:   16 QLQSQRAQMQHQINQLAAFWQSQVQEISQIDPNTFDFKTHQLPLARIKKIMKTDDDVR-------MISAEAPVLFAKACEMFILELSLRAXYHTEENKRRTLQRSDIATAISKSDVFDFLIDIVPRDDVK 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A8K1CIA2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIA2_PYTOL)

HSP 1 Score: 138 bits (348), Expect = 1.530e-34
Identity = 71/130 (54.62%), Postives = 98/130 (75.38%), Query Frame = 1 
Query:   25 QLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK 414
            QLQ Q+A +Q +  ++  FW     E++Q+DP   DFK H+LPLARIKKIM+ +DD+        MI+AEAP++ AKACE+F+LE+++RA   T ENKRRTLQR+DIA A+SK+D +DFLIDIVPR+++K
Sbjct:   55 QLQSQRAQMQHQMNQLAAFWQNQVQEISQVDPNTFDFKTHQLPLARIKKIMKTDDDVR-------MISAEAPVLFAKACEMFILEISLRAWYHTEENKRRTLQRSDIATAISKSDVFDFLIDIVPRDDVK 177
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A662XQJ6_9STRA (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XQJ6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 3.640e-34
Identity = 67/115 (58.26%), Postives = 90/115 (78.26%), Query Frame = 1 
Query:   70 INDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK 414
            ++ FW     E++QIDP   DFK H+LPLARIKKIM+ ++D+        MI+AEAP++ AKACE+F+LE+++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPR+++K
Sbjct:   32 LHAFWQNQIQEISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-------MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIK 139
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: M4BYU7_HYAAE (CBFD_NFYB_HMF domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYU7_HYAAE)

HSP 1 Score: 137 bits (344), Expect = 4.990e-34
Identity = 75/142 (52.82%), Postives = 100/142 (70.42%), Query Frame = 1 
Query:   70 INDFWNEVETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELK---KDDVGHAAAVDQEAQQQMHLMAMQ 486
            ++ FW     +++QIDP   DFK H+LPLARIKKIM+ ++D+        MI+AEAP++ AKACE+F+LE+++RA   T ENKRRTLQRNDIAMA++KTD +DFLIDIVPR+++K   K  V   A   Q+ QQQ   M  Q
Sbjct:   46 LHAFWQHQIQDISQIDPNAFDFKTHQLPLARIKKIMKTDEDVR-------MISAEAPVLFAKACEMFILELSLRAWIHTEENKRRTLQRNDIAMAITKTDVFDFLIDIVPRDDIKPAKKGPVDPQAVYQQQLQQQQAAMLQQ 180
[Close]
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Match: A0A7S1TX78_9STRA (Hypothetical protein (Fragment) n=4 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TX78_9STRA)

HSP 1 Score: 136 bits (343), Expect = 7.140e-34
Identity = 84/157 (53.50%), Postives = 109/157 (69.43%), Query Frame = 1 
Query:   91 VETEMTQIDPEKEDFKNHELPLARIKKIMRLEDDIAE--AGAP--RFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENKRRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDD------VGHAAAVDQEAQQQMHLM--AMQHALGQHMQNTLLQ 525
            V  E+  I+P++EDFK+H LPLARIKKIM+ E++I      AP  RFMI+AEAPI+ AKACEIF+ E+  R+   T ENKRRTLQRNDI++AVSKTDT+DFLIDIVPREE+K  +      +  A+ +  + QQ  ++M   MQ A  Q MQ  + Q
Sbjct:    3 VMNEIQNINPDQEDFKSHALPLARIKKIMKSEEEILNDAPNAPNSRFMISAEAPIMFAKACEIFIAELTTRSWGHTEENKRRTLQRNDISVAVSKTDTFDFLIDIVPREEIKAGEEPVQRPINAASPLGAQQQQDPNVMYQQMQLAQAQQMQAQMAQ 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig604.16674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYW5_9PHAE1.130e-11681.02CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
D8LGF1_ECTSI5.540e-108100.00CBFD_NFYB_HMF domain-containing protein n=1 Tax=Ec... [more]
A0A7S2CAV2_9STRA2.460e-3757.14Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3YAQ4_HETAK9.570e-3661.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
T0Q5X3_SAPDV1.530e-3560.87CBFD_NFYB_HMF domain-containing protein n=7 Tax=Sa... [more]
A0A2D4BX92_PYTIN2.590e-3555.38Nuclear transcription factor Y subunit C-4 n=1 Tax... [more]
A0A8K1CIA2_PYTOL1.530e-3454.62Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662XQJ6_9STRA3.640e-3458.26CBFD_NFYB_HMF domain-containing protein n=1 Tax=No... [more]
M4BYU7_HYAAE4.990e-3452.82CBFD_NFYB_HMF domain-containing protein n=1 Tax=Hy... [more]
A0A7S1TX78_9STRA7.140e-3453.50Hypothetical protein (Fragment) n=4 Tax=Phaeomonas... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig604contigEcto-sp13_S_contig604:9237..13788 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score311.6
Seed ortholog evalue5.2e-82
Seed eggNOG ortholog2880.D8LGF1
Model size1194
KEGG koko:K08066
KEGG Pathwayko04612,ko05152,map04612,map05152
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5208@1,KOG1657@2759
Ec32 ortholog descriptionHistone-like transcription factor, NF-YC subunit
Ec32 orthologEc-16_003820.1
Cds size1176
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig604.16674.1prot_Ecto-sp13_S_contig604.16674.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig604 9237..13770 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.5246842-CDS-Ecto-sp13_S_contig604:9236..95571681463841.5246842-CDS-Ecto-sp13_S_contig604:9236..9557Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 9237..9557 -
1681463841.5362604-CDS-Ecto-sp13_S_contig604:10155..103021681463841.5362604-CDS-Ecto-sp13_S_contig604:10155..10302Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 10156..10302 -
1681463841.5468793-CDS-Ecto-sp13_S_contig604:10695..107821681463841.5468793-CDS-Ecto-sp13_S_contig604:10695..10782Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 10696..10782 -
1681463841.5582013-CDS-Ecto-sp13_S_contig604:11313..114451681463841.5582013-CDS-Ecto-sp13_S_contig604:11313..11445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 11314..11445 -
1681463841.578045-CDS-Ecto-sp13_S_contig604:11930..120291681463841.578045-CDS-Ecto-sp13_S_contig604:11930..12029Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 11931..12029 -
1681463841.5899024-CDS-Ecto-sp13_S_contig604:12760..128891681463841.5899024-CDS-Ecto-sp13_S_contig604:12760..12889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 12761..12889 -
1681463841.6010048-CDS-Ecto-sp13_S_contig604:13198..133511681463841.6010048-CDS-Ecto-sp13_S_contig604:13198..13351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 13199..13351 -
1681463841.6117165-CDS-Ecto-sp13_S_contig604:13662..137701681463841.6117165-CDS-Ecto-sp13_S_contig604:13662..13770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig604 13663..13770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.6221812-UTR-Ecto-sp13_S_contig604:13770..137881681463841.6221812-UTR-Ecto-sp13_S_contig604:13770..13788Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig604 13771..13788 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig604.16674.1

>prot_Ecto-sp13_S_contig604.16674.1 ID=prot_Ecto-sp13_S_contig604.16674.1|Name=mRNA_Ecto-sp13_S_contig604.16674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=392bp
MQQLQLQQAHIQREQARINDFWNEVETEMTQIDPEKEDFKNHELPLARIK
KIMRLEDDIAEAGAPRFMIAAEAPIIIAKACEIFVLEMAMRANSLTAENK
RRTLQRNDIAMAVSKTDTYDFLIDIVPREELKKDDVGHAAAVDQEAQQQM
HLMAMQHALGQHMQNTLLQEQQQQQQQQQQLQQQQAAGGGAEGNGAAGTT
PEALAAQAALQQQALMQADPQMAMQMQVLWQQQAQQALFLQQQQQQQQQQ
QQGVAAAGQGEADIEQANAMAAMQSAMMSNPAMLQQALANAGQPQQHQQE
QQQPQQQQQPQQQQPQQQQQQQQQLQNQQQLIHQHQQMLQAQQQQAQQAQ
QQLLQQQQAQQQQQAQLAQQAAQAQQQQHQAAMSQAPTNAQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig604:9237..13788-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig604.16674.1 ID=mRNA_Ecto-sp13_S_contig604.16674.1|Name=mRNA_Ecto-sp13_S_contig604.16674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig604:9237..13788- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGGGGCGCGACGCCGATGCAGCAGCTGCAGCTGCAGCAGGCGCACAT
ACAGCGGGAGCAGGCTCGCATCAACGACTTCTGGAACGAAGTCGAGACGG
AGATGACGCAGATAGACCCAGAGAAGGTGCGCGACTTTAAGTCCCGCTAT
ACCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGCTTAGTA
GGGGTGGAGATACGGGGGTGTTTGGTACGTTTTTTTCACGGTATACTGCT
TGATACTTGTTGTGAAAGCAGCTTCCAGTTATGAACGGCATCGTGCATGC
GCTTCTACCGTATGTATATGCAGCAGCTGTTGTAATTCTTGCTTTGGCCT
GATTTCTGCAGAACGAAACATTTGTTGGACAGCCAGCAGTGACAATCCCT
GTGGTACTTTGGGTCTCTTGTCTATTGTTTTTATCAGGAGGACTTCAAGA
ACCACGAACTGCCCCTGGCCCGCATCAAGAAGATCATGCGGCTGGAAGAT
GACATCGCCGAGGCGGGGGCTCCGCGGTTCATGATTGCGGCAGAAGCGCC
GATTATCATCGCTAAAGCCTGCGAGATCTTCGTACTTGAGGTGGGAGGGA
GGCTGGTGACAGTGGGGGGGGGATAACATGTCTCTGTGTGAGTGTTTTGT
CATGTACTTCGAAGCAGTTGAGTATGAAGAATTTTTTTTCTTGGTTTAGG
GGGAGACTCAACGAGAGCGCATGGTGTAAGATTTTCATTGATTACTCGAT
TGTATATAGATGAATTTACATTGCTATAGAATAATATTGCGGTTTTTTCT
TATTTTTTCGGTTTTGGGGAAGACATCCATTGATATTTTGTTCGATTTGT
TCGTTGATATCTCCTTGTTTCGTGTTTTTCTTTTCTTTTTGGTGCTCAGA
TGGCCATGCGGGCCAACTCTCTGACGGCAGAAAACAAACGACGTACGCTG
CAGCGCAACGACATAGCGATGGCCGTCTCGAAGACCGATACGTACGATTT
CCTGATCGACATTGTGCCAAGAGAAGAGGTACGCTGTGCTTTGCCTCCGG
CATGCAGAAAGAATCTCCTCCCCACACGCAGACGCGACATGCAAGTGGAT
GAGAGATATTGTTGAAAGCGTAGGATCCATGCGGACACACTCAAGAGTGT
ACATCGGAAGAACCGATCCTTGGAAGCGTTCCGAGAACGGTCTGAATTCG
GGAGATCATTACTGATGGGAATACACGGATTCTCTTCCACGTGCCACTTT
CTGGCATGAGCGGCGGGCGGACCACTTGTGGCACCGACCACACTGCTCAC
TCTTTTTTATTAGGTACTCTCTCCTTGCCAAATTGTCAACGGAGAAGCAC
CTACCTACCCGCCCTCGGTAGCGGTGTTACAGCTACGATGACCTTGGGGT
GGACCCTTCTGCCATGTCTCCTACGAAAGAGCCTAAGTCGTCATGAGCGA
CCTCTTTGCTTTGCTTCGCTAAATCAGACGAAATGCGTAGCTACCCAACG
GAGGATGGAAGCGGGGTGCATTCGAAACTAGAACCGACGCATGGCGTTTT
TTTTTCAACGTGAAGGTTGTCGCTGTGTACCGATTTCGCGAAACACGACG
GTGTTGCACAAGCAACCGGCAATAATTTAATGGAAGGTTAACTGATGCTA
GACTCTTAAGCACCCCCCCCCCCGAACAATGTCGATAGTCTCGCAGTGTT
TCTCTACCTGATCGCTGCTGTTCTTTTGTTTTTTTTCGCGGTTGTATGTA
TGTCTCAAGCTCAAGAAGGACGACGTCGGCCACGCGGCGGCGGTTGATCA
GGAGGCCCAACAACAGATGCATCTCATGGCCATGCAGCACGCGCTCGGGC
AGCACATGGTCAGTGATTTCGCGAATTCTGCAGCCACTTTTAGTCTGTGT
TTTGTTTATAGACAGTAACTGCGCTTCGTCCCGTGTTCCGCCGCGTGCTG
AACGCGTGTTCCACTCCGCCTTCACGTGGTTGGCAGACTTAAAATCCGTA
CCGGCACTTGACAACAAGCGCTTCATCGGCCGTCTCTGCAACCCAAAAAC
CTGGATTCCCCTCTCCGTCCACCCCCGCGCGGAGCGTGGAGGCAATGAAC
TCTTTTTGCCGATTGCTCCGCTAGCCGGCGTACTTGACACGCCCTCTTGA
AGAATCGGGCCGGTTGAAGTCGTCTCCGCCCTCTCCGTGATACGTGATCA
CAGCACTCTCTCGCTGACCGCTGTCGCACCACCCAGACTGTTTCATGCCT
GTGATTTTTTTGTTTTATCGCACGTGTGTACGCGCGAACTTGTTTCTCCT
CGTGCTACCGCTGCCCCCGGCTTGGGTCGCCAAACACACACAGCAAAACA
CCCTCCTGCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCAA
CAGCAGCAGGCAGCGGGAGGTGGTGCGGAGGGCAACGGGGCTGCCGGTAC
GACTCCAGAAGCTTTGGCAGCACAGGTGAATTCTGGTGTGCGGTATATCA
TCGGGCAAGGCTCCGAAAGGGAGAGCATCCACATCGCACCAGGTTTTCCT
GCGCCAAAATCGTTCTTGTTCCGTGACAAAGTTTTTTCTTCGGCAAAACT
CCTGAACCACCCTTTTGGTCGGATCGCATTGTGTGCAATTGCAGCAGTAG
CTGGCAGCCCGAGCTTCAGTTTTTTGGTGTTCAGGCCGCTGACGTGTCCA
GCCTTATTTTCCTCGCCCGCTGCCGATGCCGTGGACCTCTGAACGTTGTG
CTATAGGCTGGACGTTGTGTTCTGGGGTCCATCTAAATTACATTGGTGAA
CGAATTTTGAGCGAGATCCCGTCCGTGTGAGGCCTATTCGGTGCGGGCGG
CAAGCTGTGGTTTCATGCCAACTCCTGTTTTTTTGGCGCGGCGATCCTGC
GGTCTCTTTTTTTTCCGTTTCGCCGGAAAGTCTTGTTCCAACAAAGCGTT
TACGTCAATCCCGGGCCTCTCGTGCAACTCCCCTTTGTCGTGTGGCGTTC
TTTCAGGCGGCCCTGCAGCAACAGGCGCTGATGCAGGCTGATCCGCAGAT
GGCGATGCAGATGCAGGTCCTCTGGCAGCAGCAGGCGCAGCAAGTGAGAC
CCTGTGGCGCCAAACAGCCCGTAACACCCCCTCCCCGTTAACCCTGTCCT
ACGAAAGCAAAGTGGAATACGGGTTGACGTTAAATCCTCCCCCCCCCCGG
GCAGCAGTAGAGAGCGAAAGATTTGTTCCCCAGCTCTAAGGGAGATTTTT
CTGCTGTCGTTGCTGTTCCAGCACCGTTTCTTGGCCGGCTTTCCTATCAT
CGCGGCTTTGAAGCCCGAAATGTATCGTCCCCACCAGCTTCCCCTTGTAA
ATCTCACTCTTCTAAATTCTCTCTATCCCTCTCTGTTCCCCCCTCTGTCC
CCCTCTTTCTCCCTCTCCCTCTGCCTGTCTCTGTTTCTCTTGTCCTCCTC
TTCTCTTGTCTCCGTGCTGCCGACATCTCCCACAAGGCCTTGTTTCTCCA
GCAGCAGCAGCAGCAGCAACAACAGCAACAACAGGGGGTGGCTGCTGCTG
GGCAGGGGGAAGCCGATATCGAACAGGCGAACGCGATGGCAGCCATGCAA
AGCGCCATGATGTCAAATCCGGCGATGCTTCAGGTCTGAGTAGTCTTGTA
CATTGCGGCTGCGTTTCCCATGTTTTCTAGCGTCCCCTTCGGTTCGGTTG
CGGCGGCGGCGTTTCGAGGCGTCGGGGGGCGGTTGGTCGTTGGTGTCTTG
GGTGGACTGATGACTGGTGGCGTCGCTATCGACGCTGGTATCGCCTGTCT
TTGCGATTGTCGTCGGGTTTGTCGTGGCCGTCGTTGTTTTGTTTTTTTTG
CAGTCGCTTGTCTTATTTGCGATGGGTCTTTTTGCTTTGTCTCTTTGTGC
TTGCTTTTCTCCTGTTTGGGTCGCGATCCCTGTCGACACTCGCTACATGC
AATGTGCACGCAAAGAGAAATCCCGACGGTTTGTTTGCACCATCAAAGCG
GCACACGACAAAAGTGTGAGACACGACATAACCCAAATTCCGCCGCTGAC
CCTGGCCGAACATGACTCGACCCTTTCGGTGTGGGAAGCCCTGAAGAATA
TAATCTTCAGAGGAAGCGTGCTTACGGTAGGGATTGTCATGGTAGAGAGG
AATGAAGAGTGTCCCGCTTTTCCGGACAACCGGTTCCTTGCCATTACGCG
TGACCCACACTGCCTTCGGTCGGGTGTCCAGCAGGCGCTTGCGAATGCTG
GACAGCCGCAACAGCACCAACAGGAGCAGCAGCAGCCGCAACAGCAGCAG
CAACCACAGCAGCAACAGCCGCAGCAGCAACAGCAACAGCAGCAACAACT
GCAAAACCAGCAGCAGCTGATACACCAACATCAGCAGATGCTGCAAGCGC
AGCAACAGCAGGCGCAGCAGGCGCAGCAGCAGCTCCTGCAGCAACAGCAG
GCGCAGCAACAGCAGCAAGCACAACTAGCACAGCAGGCGGCACAGGCACA
ACAACAGCAGCACCAGGCGGCGATGAGCCAGGCACCAACGAACGCTCAAT
AG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig604:9237..13788-

>mRNA_Ecto-sp13_S_contig604.16674.1 ID=mRNA_Ecto-sp13_S_contig604.16674.1|Name=mRNA_Ecto-sp13_S_contig604.16674.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1176bp|location=Sequence derived from alignment at Ecto-sp13_S_contig604:9237..13788- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGCTGCAGCTGCAGCAGGCGCACATACAGCGGGAGCAGGCTCG
CATCAACGACTTCTGGAACGAAGTCGAGACGGAGATGACGCAGATAGACC
CAGAGAAGGAGGACTTCAAGAACCACGAACTGCCCCTGGCCCGCATCAAG
AAGATCATGCGGCTGGAAGATGACATCGCCGAGGCGGGGGCTCCGCGGTT
CATGATTGCGGCAGAAGCGCCGATTATCATCGCTAAAGCCTGCGAGATCT
TCGTACTTGAGATGGCCATGCGGGCCAACTCTCTGACGGCAGAAAACAAA
CGACGTACGCTGCAGCGCAACGACATAGCGATGGCCGTCTCGAAGACCGA
TACGTACGATTTCCTGATCGACATTGTGCCAAGAGAAGAGCTCAAGAAGG
ACGACGTCGGCCACGCGGCGGCGGTTGATCAGGAGGCCCAACAACAGATG
CATCTCATGGCCATGCAGCACGCGCTCGGGCAGCACATGCAAAACACCCT
CCTGCAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCAACAGC
AGCAGGCAGCGGGAGGTGGTGCGGAGGGCAACGGGGCTGCCGGTACGACT
CCAGAAGCTTTGGCAGCACAGGCGGCCCTGCAGCAACAGGCGCTGATGCA
GGCTGATCCGCAGATGGCGATGCAGATGCAGGTCCTCTGGCAGCAGCAGG
CGCAGCAAGCCTTGTTTCTCCAGCAGCAGCAGCAGCAGCAACAACAGCAA
CAACAGGGGGTGGCTGCTGCTGGGCAGGGGGAAGCCGATATCGAACAGGC
GAACGCGATGGCAGCCATGCAAAGCGCCATGATGTCAAATCCGGCGATGC
TTCAGCAGGCGCTTGCGAATGCTGGACAGCCGCAACAGCACCAACAGGAG
CAGCAGCAGCCGCAACAGCAGCAGCAACCACAGCAGCAACAGCCGCAGCA
GCAACAGCAACAGCAGCAACAACTGCAAAACCAGCAGCAGCTGATACACC
AACATCAGCAGATGCTGCAAGCGCAGCAACAGCAGGCGCAGCAGGCGCAG
CAGCAGCTCCTGCAGCAACAGCAGGCGCAGCAACAGCAGCAAGCACAACT
AGCACAGCAGGCGGCACAGGCACAACAACAGCAGCACCAGGCGGCGATGA
GCCAGGCACCAACGAACGCTCAATAG
back to top