mRNA_Ecto-sp13_S_contig11953.1667.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11953.1667.1
Unique NamemRNA_Ecto-sp13_S_contig11953.1667.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11953.1667.1 vs. uniprot
Match: D7FMF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF8_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 2.190e-94
Identity = 150/158 (94.94%), Postives = 152/158 (96.20%), Query Frame = 2 
Query:    2 VISEAYHHRCKFVDPIVSTRGHREVKAQFRSLRAFLRFSKAELVSSHYDVLSRTLTMDTTMVFKPKLWPFSSFRLKYFTVVVVGSDGLVRSHTDHWSVASLLETKIGWLYRAGRRLLGAATSMLFGLLTKDSTPLVLAERVPTAPPVVEASSLNSKSD 475
            VISEAYH RCKFVDPIVSTRGHREVKAQFRSLRAFLRFSKAELVSSHYDVLS TLTMDTTMVFKPKLWPFSSFRLK FTVVVVGSDGLVRSHTDHWSVASLLETKIGW+YRAGRRL GA TS+LFG LTKDSTPLVLAERVPTAPPVVEASSLNSKSD
Sbjct:   35 VISEAYHRRCKFVDPIVSTRGHREVKAQFRSLRAFLRFSKAELVSSHYDVLSSTLTMDTTMVFKPKLWPFSSFRLKCFTVVVVGSDGLVRSHTDHWSVASLLETKIGWMYRAGRRLFGAVTSVLFGWLTKDSTPLVLAERVPTAPPVVEASSLNSKSD 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11953.1667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMF8_ECTSI2.190e-9494.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11953contigEcto-sp13_S_contig11953:1008..4437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1777
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_000890.1
Cds size309
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11953.1667.1prot_Ecto-sp13_S_contig11953.1667.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11953 2307..3111 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.3753707-UTR-Ecto-sp13_S_contig11953:1007..23061681462633.3753707-UTR-Ecto-sp13_S_contig11953:1007..2306Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11953 1008..2306 -
1681462633.4132755-UTR-Ecto-sp13_S_contig11953:3111..31211681462633.4132755-UTR-Ecto-sp13_S_contig11953:3111..3121Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11953 3112..3121 -
1681462633.4223847-UTR-Ecto-sp13_S_contig11953:3560..36401681462633.4223847-UTR-Ecto-sp13_S_contig11953:3560..3640Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11953 3561..3640 -
1681462633.432738-UTR-Ecto-sp13_S_contig11953:4358..44371681462633.432738-UTR-Ecto-sp13_S_contig11953:4358..4437Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11953 4359..4437 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462633.395155-CDS-Ecto-sp13_S_contig11953:2306..25561681462633.395155-CDS-Ecto-sp13_S_contig11953:2306..2556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11953 2307..2556 -
1681462633.405134-CDS-Ecto-sp13_S_contig11953:3052..31111681462633.405134-CDS-Ecto-sp13_S_contig11953:3052..3111Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11953 3053..3111 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11953.1667.1

>prot_Ecto-sp13_S_contig11953.1667.1 ID=prot_Ecto-sp13_S_contig11953.1667.1|Name=mRNA_Ecto-sp13_S_contig11953.1667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MDTTMVFKPKLWPFSSFRLKYFTVVVVGSDGLVRSHTDHWSVASLLETKI
GWLYRAGRRLLGAATSMLFGLLTKDSTPLVLAERVPTAPPVVEASSLNSK
SD*
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mRNA from alignment at Ecto-sp13_S_contig11953:1008..4437-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11953.1667.1 ID=mRNA_Ecto-sp13_S_contig11953.1667.1|Name=mRNA_Ecto-sp13_S_contig11953.1667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11953:1008..4437- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTATCTCGGAGGCGTATCATCACCGTTGCAAGTTCGTGGACCCGATTG
TCTCCACGAGGGGGCATCGAGAGGTGAAGGTAAGGTACCGAGTTTGTTGT
GGGTTGTGTTCGCGTAAAATAAAGGATAGCGCATCTTAGATGTGCAGCAT
ATCCACCATGCTACAAGTCAGCAAGTCAGCGCCGACTTGTATTTCAACGT
GGTGGATAAGCTGTACATCTAACAACGGAGAGTTTTGCCACAGCCCCCCG
CATCCGTATTCGAACTCTGCGTGGAATGTTCTGCAGCTCCAGAGCTTTTC
GCTGCAAAGAACTGCGGTTCTAGACTGACGGCGCCTAGATCCGATATCAG
GACACGACAGAAAGATGTTTTTACTGGGAAACATACGCTTTGCGATATTT
CCTGAAAAACATGAAAGACACACACCGAGAAATCATGGTTGCGGGAAATG
CGCAATCGAGCCGTGTCAGAGACTATCCCTCTGACCCTCTGACCCCAAAA
GTGCTGCGCTTGTGTGTTCACCGGCTCTTGCATCCCGACGGAGAAATGAA
AAGAGATTGATGCCCGAAAATTCCCGTGTCGCGTACATTAAAGTAAAAAT
GTCTGTGCTGCAGGGACAACGACGGAGCGTGGCCTCCTTCAGCTCCCCCC
CCCGAAGGCCGAAGGGGGGTTCAAGGAACCCACCGATGTGTTGATGTTGT
CGACTTCAACAGAGTTTTTAACGCAGCTCGGAATCCCACGCCAACTGCAA
GGAAACCATCCTATCCTCGCATTTGTCTGCCTTGCTCGTCTCTCCAGGCA
CAGTTCCGGAGCCTACGCGCGTTTTTGAGATTCTCCAAGGCGGAACTTGT
CTCCAGCCACTATGACGTCTTGAGCAGGTACTTACTCAGCGATCATACAT
CTTTCGTTTCCCACGGTGGCTACTTCAACCGCGTGATGTGCAACCACGTA
GGGAGCCCAAGCCGCCAGGCATCCCGTATCGTGATGCGGCAGTAGTCGTG
CCGTCGGAAGCTTGGCCCAAGCTGTGTTGTATTCCATGGTCTTTTGTTCG
ATTTGCTTGTTGTCCGGACTTTACGGGATGCCTTGCGATGTCGTGATTCC
GCGGACGCTGACTAGCGCGGTAGGCATTGAGTTCGCTGGACGTTCGAGGA
AATTGTGTCTACAGACAGACGTATCTCTCCGAATGGTGAAAAAAATGATT
AAGGATAAGATATCCACTTTCAAAAACGCGTTTCAGTCAGTTCTCCCTCT
GTCGCGTTATTTCGTGTTCGGTCCCCGTGCCTTGCTATCACGATTGGTCC
GTTTCCCCTGTTTCAGAACCCTAACGATGGACACAACAATGGTCTTCAAG
CCCAAGCTGTGGCCGTTCAGCTCCTTCCGCCTCAAGTGAGTGAGAGTCGA
GCATCAAGCCTTCCCTCCTCAGGCTTTGGACGGGGAAGACTCTAACTCCT
AGTGCATTGACTCCGGGTAAAAGCACTTAGAAGTGCGAGGTGCTCTATTC
TCAGGCTACAGGTACGATTGAACATGTGATCGGCAGGTACATGGGCTTTG
CGTTTCGACCGGGGCTACGAGCATCCAGCGTTCTAGCATGTCGTGCCTCC
GTTCGCCATGGGGCCGACATCAGTCATGACGCTCGATAAGACGCGGGTTT
GGTACTGCAGCGTTGTGTGTGGTATTCATGTCCTCAATTACAGTCTATTT
TCTATCATTACGATTCCTCCCGGTGTTTTATGCCGCGGTGGCAGCAGCGG
CGCGGCCGAACGAACGTGGATTTGTTTCCTCGGACGAATTTTTCGACCGC
AAGTTTCGCGAGAGAGAAGCTCCTCAATTCTCCACACAACAGAGTACGTA
TTTCTCTGGCTATTGTATCGCTTTCGCGCAGGTACTTCACGGTGGTGGTG
GTCGGTTCCGACGGGCTGGTCCGCTCGCACACAGACCACTGGTCCGTAGC
GTCCCTCCTGGAGACCAAGATCGGCTGGTTGTACAGGGCCGGGCGCCGGC
TGCTCGGAGCGGCGACCTCGATGTTGTTCGGCTTGCTGACAAAGGACTCA
ACTCCGCTCGTGCTCGCGGAGCGTGTCCCTACGGCGCCTCCGGTTGTCGA
AGCTTCTTCTCTTAACTCGAAGTCAGATTGATTGGAAGCGTCGTTGTGGA
ATCTTCCTCGGTTCGGGGTGGCACAGCTTCGCAAGGTGTTGTCTGTCCAG
AAGCTGGGATTTCTTCGTACGACACAGGTCAAATTGGCTGTGATTGCGAG
GGGCTGCAGTTTTTTTTTGTTTTGTTGACTTGATTGACGTTTGCCGTGGC
ACAAAGCTGACTTGAGTTGTTCTTGGGGCTGCTGTTGAGCCCAATTTGTG
TGTAGTATTTTGAACAGAACCCTCCAAATGGTTAGGTCACACCAGCCAAG
GGATCGAGTGAACGTCGTCCAAGTAGATGACAATACACAACATCTCCGGA
GACTGACGTTTCTTCTCGATCGATGGTATGTCAGTCAGGTGAAGAATTTC
CGGGCTTTGGATTAATTAGTATAGAGTGTGTGCCCGCCATCGTCGTTACT
TCAATATGAACATCAGCCCAGGAGATTTGTTGTGCAGGGCATGTCCATGT
ATGTTTTCACTTTAGTGGCCAAAAAAGGATCAAAGCGTCCAATCATTGTA
CATGAGGGTGCCTACCTTTTAGTAATATAGTGCAGTTTCGTGTGGTGTCT
GGTTTGACCGTAAAGCTGGCGGTGCGAAGCTGTTTTGCTGCTGATCGCGC
ACGTAAACTGGCGGGCAGGTTCCCTTGCTGAGTAGAGAGCACGCGTTTGG
CTCATGGTACCTGCCCACAGCGCTCTAGCCTCCTGACTCTTGTTCCCTTT
TGTTGCGTGCCGACATTGCTGCTCGGCAATAACCATTTGCAAGAGATTGG
TAACAATGAAGGTTGCGCCGTTAGAGTAGACAACGTTGGGTTCGGGGGAC
CTTTGTGATGTGGTGAGACAATCCCCGAGATACCATGATGAGAGTGTTTG
GTGTTTCGTAGAGAATAATGGTGACGATATGTTGGTTAGAGTGGGCTCAG
GTACTGATTTGTGATGCAGGTTCTGTGCCGAAGCGTTTTGAACGCATGAA
CACCTGCAGCAGTGGAAACTATTAGTCCATGTATCGATCGCCTGGTATTG
TCAGTGCATGGACTCAGAGATTCGGGAGGGGTAGAGAACAAGTCGATGTA
TGGACAAATCGTGTTAAGTTCAACTTGGGGTGGACCGTGTCGTATAATGC
TAAGTCTGTGGTTGGTGACGGCTGTCGACGGCTAGCACAGGTATTGAGGT
CGATAAGTCGGGTTGTACAGAAATGATTCGTTACCCGGTTTACTTCGTAT
ATCAATGGAAGCGATGTCCGACTCGCAATCTCCGAGAGATCCATAGATTA
ATTTTAATGTTTTCAAGAGGAGAGGCATAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11953:1008..4437-

>mRNA_Ecto-sp13_S_contig11953.1667.1 ID=mRNA_Ecto-sp13_S_contig11953.1667.1|Name=mRNA_Ecto-sp13_S_contig11953.1667.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11953:1008..4437- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACAACAATGGTCTTCAAGCCCAAGCTGTGGCCGTTCAGCTCCTT
CCGCCTCAAGTACTTCACGGTGGTGGTGGTCGGTTCCGACGGGCTGGTCC
GCTCGCACACAGACCACTGGTCCGTAGCGTCCCTCCTGGAGACCAAGATC
GGCTGGTTGTACAGGGCCGGGCGCCGGCTGCTCGGAGCGGCGACCTCGAT
GTTGTTCGGCTTGCTGACAAAGGACTCAACTCCGCTCGTGCTCGCGGAGC
GTGTCCCTACGGCGCCTCCGGTTGTCGAAGCTTCTTCTCTTAACTCGAAG
TCAGATTGA
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