mRNA_Ecto-sp13_S_contig6039.16670.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6039.16670.1
Unique NamemRNA_Ecto-sp13_S_contig6039.16670.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6039.16670.1 vs. uniprot
Match: D7FJQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ0_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.670e-19
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 GAQKGAAYVYRRSPKSGLWYEETKLFLDDGLATDRYGWQV 120
            GAQKGAAY+YRRSP SGLWYEETKLFLDDGLATDRYGWQV
Sbjct: 2229 GAQKGAAYIYRRSPTSGLWYEETKLFLDDGLATDRYGWQV 2268
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6039.16670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJQ0_ECTSI9.670e-1995.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6039contigEcto-sp13_S_contig6039:443..613 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.7
Seed ortholog evalue3.9e-15
Seed eggNOG ortholog2880.D7FJQ0
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.FG-GAP repeat
EggNOG OGs28JEB@1,2QRTB@2759
Cds size171
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.2672646-CDS-Ecto-sp13_S_contig6039:442..6131681463841.2672646-CDS-Ecto-sp13_S_contig6039:442..613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6039 443..613 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6039.16670.1prot_Ecto-sp13_S_contig6039.16670.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6039 443..613 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6039.16670.1

>prot_Ecto-sp13_S_contig6039.16670.1 ID=prot_Ecto-sp13_S_contig6039.16670.1|Name=mRNA_Ecto-sp13_S_contig6039.16670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=57bp
GAQKGAAYVYRRSPKSGLWYEETKLFLDDGLATDRYGWQVGETLRIPSDT
EIGTPSH
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mRNA from alignment at Ecto-sp13_S_contig6039:443..613-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6039.16670.1 ID=mRNA_Ecto-sp13_S_contig6039.16670.1|Name=mRNA_Ecto-sp13_S_contig6039.16670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6039:443..613- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCGCAAAAGGGAGCGGCCTACGTCTACCGTCGAAGTCCCAAGAGCGG
GCTCTGGTACGAGGAGACAAAGCTCTTCTTGGACGACGGCCTAGCGACAG
ACCGATACGGCTGGCAGGTTGGGGAAACTTTGCGTATCCCGAGTGACACA
GAAATAGGCACCCCGTCCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6039:443..613-

>mRNA_Ecto-sp13_S_contig6039.16670.1 ID=mRNA_Ecto-sp13_S_contig6039.16670.1|Name=mRNA_Ecto-sp13_S_contig6039.16670.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6039:443..613- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGCGCAAAAGGGAGCGGCCTACGTCTACCGTCGAAGTCCCAAGAGCGG
GCTCTGGTACGAGGAGACAAAGCTCTTCTTGGACGACGGCCTAGCGACAG
ACCGATACGGCTGGCAGGTTGGGGAAACTTTGCGTATCCCGAGTGACACA
GAAATAGGCACCCCGTCCCAC
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