mRNA_Ecto-sp13_S_contig6038.16669.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6038.16669.1
Unique NamemRNA_Ecto-sp13_S_contig6038.16669.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: D8LTZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTZ1_ECTSI)

HSP 1 Score: 429 bits (1104), Expect = 2.350e-147
Identity = 236/250 (94.40%), Postives = 240/250 (96.00%), Query Frame = 3 
Query:  354 GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNPTPARPAQERFGSSQVSVSAHAAVELDETGGQLEKAVPVAGTNVVMHFITSGSRGACVDISQIHSLL 1103
            GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNP PARPAQERFGSSQVSV A+ AVELDETGGQLEKAVPVAGT V++HFI SG RGA VD+  IH LL
Sbjct:  111 GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNPAPARPAQERFGSSQVSVGAYTAVELDETGGQLEKAVPVAGTIVLVHFIISGRRGADVDMCLIHPLL 360
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A7S2FVB6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FVB6_9STRA)

HSP 1 Score: 207 bits (527), Expect = 1.290e-61
Identity = 128/198 (64.65%), Postives = 147/198 (74.24%), Query Frame = 3 
Query:  333 ACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPT-------GVDEFGLPVNP 905
            A   +I  LD EL KY+  LKKAKGPTA NIK+RAMETLKRKKMYE QRDQMAGQ FNIEQT FAIDSIKDT TTVAAMKDA+KTLKA+ KK++I+++ED      XXXXXX  IND+MGR+Y + DE+DE DLDAELACL+DEL+ LE  E +  PSY+ QPA +P EPS VP             GVD FGLPV P
Sbjct:   56 AMDEKIAKLDLELRKYKEQLKKAKGPTAANIKRRAMETLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKDAAKTLKAETKKLNIDQIEDTQXXXXXXXXXXXXINDMMGRAYGMPDEVDEADLDAELACLEDELEGLEEGETEAAPSYL-QPAGMPVEPSAVPAGAPAADAAAEADGVDAFGLPVAP 252
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A7S2AMY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AMY1_9STRA)

HSP 1 Score: 193 bits (491), Expect = 1.370e-56
Identity = 112/177 (63.28%), Postives = 131/177 (74.01%), Query Frame = 3 
Query:  399 AKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYVAQPASLPQEPSLVPESTGPT--------GVDEFGLPVNP 905
            AKGPTA NIK+RAM+TLKRKKMYE QRDQMAGQ FNIEQT FAIDSIKDT TTVAAMK A+ TLKA+ KK++I+ +ED  DD+       NEIN++MGRSY V DE+DE+DLDAELACLDDEL+ +E  EE    SY+  PA LP EPS  P    P+        G+D+FGLPV P
Sbjct:   52 AKGPTAANIKRRAMDTLKRKKMYEQQRDQMAGQAFNIEQTSFAIDSIKDTQTTVAAMKVAASTLKAETKKLNIDSIEDTQDDLGDMMEDMNEINEMMGRSYGVPDEMDEEDLDAELACLDDELEGIEAGEEAEA-SYLG-PAGLPVEPSAEPAGANPSAALPADGGGMDDFGLPVAP 226
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A835ZMU4_9STRA (Snf7 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMU4_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.720e-51
Identity = 109/182 (59.89%), Postives = 136/182 (74.73%), Query Frame = 3 
Query:  345 QIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELAC------------LDDELDALEGLEEDTGPSYVA--QPASLPQEPSL 848
            +IK LDQEL+++++AL KAKG  A NIK+RAMETLKRKKMYE QRDQ+AGQQFNIEQT F IDSIKDT TTV AMK A+K +K++ KK++I+++ED  DD+AXXXXX NEINDIMGRSYNVGDE+DE DLDAELAC            +DD+   +        PSY+A  +PA+   + +L
Sbjct:   34 KIKVLDQELLRHKHALAKAKGQAAVNIKRRAMETLKRKKMYEAQRDQLAGQQFNIEQTNFTIDSIKDTQTTVQAMKGANKQIKSEFKKMNISEIEDTIDDLAXXXXXMNEINDIMGRSYNVGDEIDEADLDAELACXXXXXXXXXELGIDDDAGGITATAGTARPSYLAPSRPAAAQSQVAL 215
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A812Y1R2_SYMMI (CHMP5 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y1R2_SYMMI)

HSP 1 Score: 176 bits (445), Expect = 1.010e-49
Identity = 103/203 (50.74%), Postives = 136/203 (67.00%), Query Frame = 3 
Query:  324 RPIACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTG---PSYVAQPASLPQEPSL--------VPESTGPTGVDEFGLPV 899
            R  A   +IK  D EL  Y+  + KAKGP    I++RA+E LKRKKMYE QRDQ+ GQ FN++Q  FA+++IKDT TTVAAMKDA+K LK +  KID+N++ED+ DD+A      NEI++ +GRSY   D +DEDDL+AELACL DE D  E L E+     PSY++ P+ +P  P+          P++  P+GVDEFGLPV
Sbjct:   27 RVAALDEKIKAADNELRVYKTQIAKAKGPAKAGIQRRAVEVLKRKKMYEQQRDQLCGQAFNLDQAAFAMETIKDTHTTVAAMKDAAKQLKVEHAKIDLNEIEDLNDDLADMFEDMNEISETLGRSYGTPDYIDEDDLEAELACLGDEFD--EELTEEVSLEQPSYLS-PSGMPHVPAAGLPVPTIAQPQAPQPSGVDEFGLPV 226
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A7S3K2P3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2P3_9STRA)

HSP 1 Score: 174 bits (442), Expect = 3.080e-49
Identity = 111/198 (56.06%), Postives = 142/198 (71.72%), Query Frame = 3 
Query:  324 RPIACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDA-LEGLEEDTGPSYV--AQPASLPQEPSL---VPESTGPTGVDEFGLPV 899
            R  A   +IK L+ EL  Y+  LK+A+GP    +K+RAM  LKRKKMYE QRDQ+AGQ FNIEQT F IDS+KDT TTV AMK ASKTLK + KK++I+K++D+ D   XXXXXXNE+ D++GRSY+VG+++DE DLDAEL  L D+LDA LE  + D+ P+Y+  A+P +LP+        PES     VDEFGLPV
Sbjct:   36 RVAALDEKIKKLEVELSGYKEKLKRARGPAQKTLKQRAMGVLKRKKMYEQQRDQLAGQAFNIEQTNFTIDSVKDTITTVDAMKAASKTLKTEFKKVNIDKIDDLQDXXXXXXXXXNEVQDVLGRSYDVGEDIDEADLDAELEALGDDLDAELELDDADSTPAYLQPAEPTNLPEXXXXXXXAPESA----VDEFGLPV 229
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: F0Y671_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y671_AURAN)

HSP 1 Score: 172 bits (435), Expect = 1.600e-48
Identity = 93/154 (60.39%), Postives = 118/154 (76.62%), Query Frame = 3 
Query:  399 AKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYV--AQPASLPQEPSLVP 854
            AKGP A  +K+RAM  LKRKKMYE QRDQ+AGQ FN+EQT FAIDS+KDT TTV AMK ASKTLK + KK+DI+++ED+ DD+A      NE+ D +GRSY +GD++DE DLDAELACLDDEL   E   ED+ P+Y+  A P +LP++P+ +P
Sbjct:   52 AKGPAAKTLKQRAMAVLKRKKMYEAQRDQLAGQAFNVEQTSFAIDSVKDTLTTVDAMKAASKTLKTEFKKVDIDQIEDVQDDLADMMEDMNEVQDALGRSYGIGDDVDEADLDAELACLDDELGMDELGLEDSTPAYLQPADPGALPEQPTNLP 205
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A7S4EE62_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EE62_9STRA)

HSP 1 Score: 171 bits (433), Expect = 4.570e-48
Identity = 101/194 (52.06%), Postives = 138/194 (71.13%), Query Frame = 3 
Query:  324 RPIACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGPSYV--AQPASLPQEPSLVPESTGPTGVDEFGLPV 899
            R  A   +I+ LD EL  Y+  LKKA+G     +K+RAM  L+RK+MYE QRDQ+AGQ FN+EQT FAIDS+KDT TTV AMK ASKTLK ++KK+D++++ED+ DD+AXXXXXX  + D++G+SY +GD++D+ DLDAEL  L D+ D +   + D  P+Y+  A P+ +P +P+  P       VDEFGLPV
Sbjct:   27 RTTALDEKIRKLDIELAGYKEKLKKARGAAQQTLKRRAMGVLRRKRMYEQQRDQLAGQAFNVEQTNFAIDSVKDTLTTVQAMKTASKTLKKEVKKVDLSQIEDLQDDLAXXXXXXXXVQDVLGQSYGIGDDIDDADLDAELDALGDDFDDV--ADADATPAYLQPADPSLMPDQPTDAPVQAD--DVDEFGLPV 216
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: A0A6H5JWU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWU6_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.830e-47
Identity = 86/93 (92.47%), Postives = 90/93 (96.77%), Query Frame = 3 
Query:  285 LSSAVLLLLYTICRPIACTRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVA 563
            LS++VLLLLYT+CR IAC RQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATT +
Sbjct:   20 LSASVLLLLYTVCRRIACVRQIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTAS 112
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BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Match: W4HCB2_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCB2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.840e-44
Identity = 95/192 (49.48%), Postives = 129/192 (67.19%), Query Frame = 3 
Query:  345 QIKGLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQFNIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAXXXXXXNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLE-EDTGPSYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNPTPAR 917
            +I  L++EL KYR  + KAKGP  T+IK+RA++TLKRKKMYE QRD MA Q FNIEQ  FAI++ KD+  TV+AMK A+  LKA+ KK +  ++E++ DDMA      NEI +I+GRSY VG ++DE +L+AEL  L+DE    E +  +   PSY+A    LP  P+ V ++    GVDE+GLP+ P   R
Sbjct:   34 KISKLEEELQKYRQQMAKAKGPALTSIKQRALQTLKRKKMYEQQRDSMAAQSFNIEQASFAIETAKDSLDTVSAMKSAATQLKAETKKFNFAELENVQDDMADMMDDMNEIQEILGRSYGVGQDIDESELEAELEGLEDEWAMEEAVAPQHAAPSYLA--TDLPAAPTGVKDTPTAAGVDEYGLPLAPVALR 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6038.16669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTZ1_ECTSI2.350e-14794.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2FVB6_9STRA1.290e-6164.65Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AMY1_9STRA1.370e-5663.28Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZMU4_9STRA1.720e-5159.89Snf7 family n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A812Y1R2_SYMMI1.010e-4950.74CHMP5 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S3K2P3_9STRA3.080e-4956.06Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0Y671_AURAN1.600e-4860.39Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S4EE62_9STRA4.570e-4852.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6H5JWU6_9PHAE1.830e-4792.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4HCB2_9STRA1.840e-4449.48Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6038contigEcto-sp13_S_contig6038:3066..6202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score432.6
Seed ortholog evalue1.5e-118
Seed eggNOG ortholog2880.D8LTZ1
Preferred nameCHMP5
Model size1103
KEGG rclassRC00918,RC01781
KEGG koko:K01698,ko:K12198
KEGG ReactionR00036
KEGG Pathwayko00860,ko01100,ko01110,ko01120,ko04144,ko04217,map00860,map01100,map01110,map01120,map04144,map04217
KEGG ModuleM00121,M00412
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000815,GO:0000819,GO:0000920,GO:0001919,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005774,GO:0005829,GO:0006810,GO:0006886,GO:0006996,GO:0006997,GO:0007032,GO:0007033,GO:0007034,GO:0007040,GO:0007041,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007346,GO:0008104,GO:0008150,GO:0008333,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0019058,GO:0019068,GO:0019222,GO:0022402,GO:0022411,GO:0022607,GO:0023051,GO:0030447,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0032509,GO:0032510,GO:0032511,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0036257,GO:0036258,GO:0036452,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044087,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046605,GO:0046755,GO:0046907,GO:0048284,GO:0048285,GO:0050000,GO:0050789,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051276,GO:0051301,GO:0051303,GO:0051310,GO:0051493,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051726,GO:0051783,GO:0060236,GO:0060255,GO:0061024,GO:0061025,GO:0061763,GO:0065007,GO:0070507,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071985,GO:0080171,GO:0090169,GO:0090174,GO:0090224,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098813,GO:0098852,GO:0140014,GO:1901673,GO:1902115,GO:1903047,GO:1904896,GO:1904903
Exons5
EggNOG free text desc.vacuolar transport
EggNOG OGsKOG1655@1,KOG1655@2759
EC4.2.1.24
Cds size900
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6038.16669.1prot_Ecto-sp13_S_contig6038.16669.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6038 3269..6202 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.1302927-UTR-Ecto-sp13_S_contig6038:3065..32681681463841.1302927-UTR-Ecto-sp13_S_contig6038:3065..3268Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6038 3066..3268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463841.188752-CDS-Ecto-sp13_S_contig6038:3268..36221681463841.188752-CDS-Ecto-sp13_S_contig6038:3268..3622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6038 3269..3622 +
1681463841.2002518-CDS-Ecto-sp13_S_contig6038:4231..43771681463841.2002518-CDS-Ecto-sp13_S_contig6038:4231..4377Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6038 4232..4377 +
1681463841.2108917-CDS-Ecto-sp13_S_contig6038:4893..49601681463841.2108917-CDS-Ecto-sp13_S_contig6038:4893..4960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6038 4894..4960 +
1681463841.2206552-CDS-Ecto-sp13_S_contig6038:5592..57511681463841.2206552-CDS-Ecto-sp13_S_contig6038:5592..5751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6038 5593..5751 +
1681463841.2306895-CDS-Ecto-sp13_S_contig6038:6028..62021681463841.2306895-CDS-Ecto-sp13_S_contig6038:6028..6202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6038 6029..6202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6038.16669.1

>prot_Ecto-sp13_S_contig6038.16669.1 ID=prot_Ecto-sp13_S_contig6038.16669.1|Name=mRNA_Ecto-sp13_S_contig6038.16669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=300bp
MQGSIPVDASNFESELFPLALPRHEHRLSSAVLLLLYTICRPIACTRQIK
GLDQELVKYRNALKKAKGPTATNIKKRAMETLKRKKMYEGQRDQMAGQQF
NIEQTGFAIDSIKDTATTVAAMKDASKTLKADIKKIDINKVEDMTDDMAD
MMEDMNEINDIMGRSYNVGDELDEDDLDAELACLDDELDALEGLEEDTGP
SYVAQPASLPQEPSLVPESTGPTGVDEFGLPVNPTPARPAQERFGSSQVS
VSAHAAVELDETGGQLEKAVPVAGTNVVMHFITSGSRGACVDISQIHSLL
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mRNA from alignment at Ecto-sp13_S_contig6038:3066..6202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6038.16669.1 ID=mRNA_Ecto-sp13_S_contig6038.16669.1|Name=mRNA_Ecto-sp13_S_contig6038.16669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3137bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6038:3066..6202+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAGGGAGCCCGGGCATGGGATTTTTGATGCGAATAGATCGGCGTAGTACG
GGTATTAGCCAAAAGCACCATCAGCCCTGTCCCCGGCGGGATGGCTAGGG
ATGGCTTCATTCGAGGTGCGGCCTTCCGAGTGTCCACGGCACTCAACTTC
GGAGCGAATGGGATACAGGAGAGCGGTGCTCCCTCCTCCGCCTGTATGCA
TACATGCAAGGCAGTATTCCTGTTGATGCCTCCAATTTCGAAAGTGAACT
TTTTCCTCTCGCATTACCTCGCCACGAACATCGTCTCTCATCAGCAGTGC
TGCTGCTGCTGTACACGATCTGTCGGCCTATCGCGTGTACTCGCCAGATC
AAGGGACTGGACCAGGAGCTCGTCAAGTACCGTAACGCGCTCAAGAAGGC
CAAGGGTCCCACGGCAACGAACATCAAGAAGCGCGCGATGGAGACTCTGA
AGCGAAAAAAGATGTACGAGGGGCAGAGGGACCAGATGGCCGGGCAGCAG
TTCAACATCGAGCAGACAGGCTTCGCGATCGACTCCATCAAGGACACAGC
TACAACGGCAAGAATTTTTTTTTGTTTTTGGTTTGTCGTTTTAGTCTTTG
GTGCAGAGCGTGGGTGTGAGGGGTCTAGTGAGATGTACCGGAAAAAAAAT
GCTGACGTCCCCATACCTTCGGTAGTGTGCTTCACTTGGGACACACACAC
AGAGCGAGAAGAAACTGGGAGAGAGAGAAAAAACAAAAGGGAGCGAGAGA
GAGAGACAGAGAGAGAGACAGAGAGACAGAGAGACAGAGACAGACAGAGA
GACAGACAGACAGACACAGGCACCGAGACAGACACAGAGACAGAGAGAAC
ACGAGAGAGGCAGAGACAGACGCAAAGAGTAGACCATTTTATGGTTTTGG
TCGTCTACTGTATCCTCACAAGTGGTTTAATCGGAGAGTGTTTTTGGATG
CCGGTGCCGTTGTCAGTGCCAAATGTTCTGTCCCACCCCAACACCCAATT
ACGGCACTAGGAAACTCCCTCTGACGGTTTCTGCACCGAACAGCACTTTT
CTGGGAAACCTACACTTGGTACTTGAGTAATCAAAGGCTCTAGGGTTTTT
GAAGCCGGGGGGCACTTCGTGGTAGTGTGTTTCATTGTACGCTACGCTGC
TGTGTGAATACGCCAGGTGGCGGCGATGAAGGACGCGAGCAAAACACTTA
AGGCAGACATCAAGAAGATCGACATCAACAAGGTGGAGGACATGACGGAC
GACATGGCCGACATGATGGAGGACATGAACGAAATCAACGACATCATGGG
CCGCTCCTACAAGTGAGTTCAAAATACGCGGATGGTGCGAGCCAGCGTTA
GCGCAGCCTGTGTGAAGCCGCTGTGCTTCCTACGACCGACTCCATGTGAC
GCACAACACGTTGATGACAATGACGCCTCAGGCACGGGTGAAGATAGCGT
GAACGAGCCTATCAACACGATTCAACACCGTTCACCGGCCGCCGCTAAGT
TGGATGCAGGATGATTCGTTCGATGGTGCCATCAACTGCCTCTCACTCAC
CACTTCGTTTGTGTCGACACCTCAAGGCGCGCGCTTGTGATCCTTGAACT
GGCGTGGATTGCACCAGCCTTTTCTTCATCAATGAGAACTGGCCAGATGA
ACACGCTCCGTTCTCCCCCACAGTGATATATCGTTGCTTTCGTGCTGTAT
CTTTTGGTCTCTTCGTCGTCCTGTCGCTGATAAACCTCTCCCATCTCTTC
GTCGTCCTGCCGCTTGGAAACCTCTCCCAAACAACCTTCACGCGCGGCGC
CCTCTCCCCTTTGAACCTGTGCCAACAGCGTCGGAGATGAGCTAGACGAG
GATGACCTCGACGCGGAGTTGGCGTGCCTGGACGACGAACTCGATGTGAG
TTTGGCGATATACCCGCTGCCGCGGTCATTCTTTTTTTTTCTGACATTAC
ATGAGGGCGGGTGCTGGCGTTGTATTGTGGGCCACCGAAGCGCATCGAAA
GTATGGGACGGTATCCCGGGGGGTGTTGTACCCCCCAAGACAGTATCTCG
GCGTTCCTTTTCAACATGCAGTACCTTGGGGTTGGTGGCTTAATCCACAC
ACAGGCAAGGAACCGTTATAACAAAGGTGGAATTGCGTCATGTACGGCGA
TGCGGAGTAGTCACTCCAGCCGTTGTATGACGTTTGCAACGTCTTTTGAG
TGATCGGAACTTTGGCGCGTCCCCTTTTGTGTCAAGTGAAAAAATTCCCT
CAGATTCGACTGTGCAATTTTTAAGCGGCGATGAGCCCCCAATAATATGC
ACACCGTTAGACAACCAGCAGAGTTTATGTCCTGCAGCACGGCTTACCCT
CCCACCGCTCTGCAATTTGTCTCTCTCTCGCATGCGTGAGTGCTGACTGT
AGTATCATTCCAACAACTGCCTTGCCTCCCCCGCCCTTCGCACCAATCCG
ACTTCCCCTCTTGCGTTCCCCCCGCCGCTGTCATTATTGTATTTCGAACA
ACCGCAACCAAAAACTACGGAACACAGGCCTTGGAAGGCCTCGAGGAGGA
CACGGGCCCTTCCTACGTTGCGCAGCCGGCGAGCCTTCCCCAGGAGCCGT
CGCTCGTGCCGGAGTCAACCGGACCCACGGGGGTCGACGAGTTCGGGTTG
CCCGTCAATCCCACCCCGGCGAGGCCGGCACAGGAGGTCCGTTTGTGACC
CTACTCGACCTTGCTTGCCACCGCCGCAGCTGTCTGTATCAAGTTGTTGA
GGGGCCATCCATGTCGGTTCGTGTTTGGGTGGGTGGGTAGGTAGTCTTGG
TGTTTCAGATGTGGGTCGATGGTTCGTTGCGTGTTCCCGTGTTGGGTTTT
GCTGATGCGTTGAGCTTCAGCAATAATAGTCAAAGCGGCAGCCTTGTATC
TATCCTACGTTTTTATGTCGGCCATGCTTTGCGGGGGGTGGGCGCATGTC
ACGGGCCGGTCAGCGTTTCGGAAGCAGCCAAGTTTCCGTTAGTGCGCACG
CCGCGGTGGAGTTGGATGAGACTGGAGGCCAGCTGGAAAAGGCGGTGCCG
GTTGCGGGAACAAATGTCGTGATGCATTTCATTACTTCTGGCAGTAGGGG
AGCCTGCGTCGACATAAGTCAGATACATTCCCTACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6038:3066..6202+

>mRNA_Ecto-sp13_S_contig6038.16669.1 ID=mRNA_Ecto-sp13_S_contig6038.16669.1|Name=mRNA_Ecto-sp13_S_contig6038.16669.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6038:3066..6202+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGGCAGTATTCCTGTTGATGCCTCCAATTTCGAAAGTGAACTTTT
TCCTCTCGCATTACCTCGCCACGAACATCGTCTCTCATCAGCAGTGCTGC
TGCTGCTGTACACGATCTGTCGGCCTATCGCGTGTACTCGCCAGATCAAG
GGACTGGACCAGGAGCTCGTCAAGTACCGTAACGCGCTCAAGAAGGCCAA
GGGTCCCACGGCAACGAACATCAAGAAGCGCGCGATGGAGACTCTGAAGC
GAAAAAAGATGTACGAGGGGCAGAGGGACCAGATGGCCGGGCAGCAGTTC
AACATCGAGCAGACAGGCTTCGCGATCGACTCCATCAAGGACACAGCTAC
AACGGTGGCGGCGATGAAGGACGCGAGCAAAACACTTAAGGCAGACATCA
AGAAGATCGACATCAACAAGGTGGAGGACATGACGGACGACATGGCCGAC
ATGATGGAGGACATGAACGAAATCAACGACATCATGGGCCGCTCCTACAA
CGTCGGAGATGAGCTAGACGAGGATGACCTCGACGCGGAGTTGGCGTGCC
TGGACGACGAACTCGATGCCTTGGAAGGCCTCGAGGAGGACACGGGCCCT
TCCTACGTTGCGCAGCCGGCGAGCCTTCCCCAGGAGCCGTCGCTCGTGCC
GGAGTCAACCGGACCCACGGGGGTCGACGAGTTCGGGTTGCCCGTCAATC
CCACCCCGGCGAGGCCGGCACAGGAGCGTTTCGGAAGCAGCCAAGTTTCC
GTTAGTGCGCACGCCGCGGTGGAGTTGGATGAGACTGGAGGCCAGCTGGA
AAAGGCGGTGCCGGTTGCGGGAACAAATGTCGTGATGCATTTCATTACTT
CTGGCAGTAGGGGAGCCTGCGTCGACATAAGTCAGATACATTCCCTACTT
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