mRNA_Ecto-sp13_S_contig6036.16665.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6036.16665.1
Unique NamemRNA_Ecto-sp13_S_contig6036.16665.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6036.16665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6036contigEcto-sp13_S_contig6036:4864..8202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2791
Hectar predicted targeting categoryother localisation
Exons3
Cds size2403
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.8257625-UTR-Ecto-sp13_S_contig6036:4863..52511681463840.8257625-UTR-Ecto-sp13_S_contig6036:4863..5251Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6036 4864..5251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.8382447-CDS-Ecto-sp13_S_contig6036:5251..61751681463840.8382447-CDS-Ecto-sp13_S_contig6036:5251..6175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6036 5252..6175 +
1681463840.8494902-CDS-Ecto-sp13_S_contig6036:6412..65471681463840.8494902-CDS-Ecto-sp13_S_contig6036:6412..6547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6036 6413..6547 +
1681463840.8611655-CDS-Ecto-sp13_S_contig6036:6858..82021681463840.8611655-CDS-Ecto-sp13_S_contig6036:6858..8202Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6036 6859..8202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6036.16665.1prot_Ecto-sp13_S_contig6036.16665.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6036 5252..8202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6036.16665.1

>prot_Ecto-sp13_S_contig6036.16665.1 ID=prot_Ecto-sp13_S_contig6036.16665.1|Name=mRNA_Ecto-sp13_S_contig6036.16665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=801bp
MVSRETTAPPQAAPLAASTMEEVEPASPPSKLISGNRRMQTESAPAGTAA
TETAAAVDVAVHDHDASREERAPANKIRDGSTTSNGPAPPLPARHEGVGG
PPPTGTTCSSSSSSNQVPSTCCMAPVATVLSSAQATNNQAAEPVTTPPLL
LGSARSGPSPPPPSTPSTSSNGAPRRSLAHGDCPTAPGAAAAAAAAAAVT
AADGAAAAAAPPFPSPPSLSLSPADNVESPPPSAPWLVERALSIKAAIEE
AVNSGDGGGGAASGGGGGAGGAGVLLPAAHEAIAGGIEQGAGGRGGSGEV
FPHGVLAKVPRLVADLHDALGRAVSTNEARAWVRALDRLGEGLDRDQLLE
ACLDVSRDVLRLDGSPSPSRPVRGESPADAAAPLSGLASTALAEESELGK
GAAEAAGAAITVTDALPRGGSCPESVSPTPASCSAVVEAPAGTATAARTL
DANGAVLPAPAAKTPVMWPASSQITGPGEGDGPVTVALAQAEAPAVASDG
GARRTGEEAAAEESVVSGAVSFLGNHPHGSSSTSAVVPFSSISTAQAPPP
PPGPPPPPEACEPSVSQERAVPFLAVTPSKAVLAAAAAKARAAARASASE
TTTIATAAPPRLAPAPTAATVPAPAPTPAVGGENNSGGDSNAKREPSWPA
SSCRGGVSADGEVSGPAPATAEAADAAAGHCKEGAGAEAEERCPAAARNA
AGEAPAVPRGDAGGAPEVVTSPTDTCDCVGIAAADVAIDCDVPPDPGQSI
GSSGSVSVGGGGGSETACARGVVGRGTAGRGRKQGVRRNASKFPDDVIAK
V
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mRNA from alignment at Ecto-sp13_S_contig6036:4864..8202+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6036.16665.1 ID=mRNA_Ecto-sp13_S_contig6036.16665.1|Name=mRNA_Ecto-sp13_S_contig6036.16665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6036:4864..8202+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTGCTTTCCACCTGCGCTTGCACTACGCCGACCCGTGGAGATGGTGGAA
ACATCAAGAGCTGTACTACTTTCAGGTCTGTTAAGCTGCAATGAGATCAG
TGCAGACACGTGCCTGAATTAGAAAGTATAACTTTAGTCGGAAAGTCTCG
ACTGATCTCCGGTTTTTCAAATTTGCTGGGTTGGGTGCGAAAAACTGCAA
ATCCGAAGGGCGGGGCCTGGTATTCGCGCCCAGCTGGTATGGTAGAGACA
CGATCGCAAGCAGCAGTGGAAGCAGCAGTAGAAGTATAGCGGTGAACCCT
TGGAAGCGCGAGAGCGGGCGCCTTGTCGTCGTCATTGTCGTTGTGTGGGT
CTGGGTTGCAGCACACCAAAAGAAACCACAGGCGGAGCATGGTGTCGCGT
GAAACAACAGCACCACCACAGGCAGCACCTCTGGCGGCGAGCACCATGGA
GGAGGTGGAGCCAGCAAGCCCTCCCAGCAAATTAATCAGCGGCAACAGAC
GGATGCAGACGGAAAGCGCACCAGCAGGAACAGCTGCAACAGAAACAGCA
GCGGCAGTAGATGTGGCGGTTCATGATCATGATGCTTCACGAGAGGAAAG
AGCACCAGCGAACAAGATTCGGGACGGTTCGACAACTTCAAACGGCCCTG
CACCGCCGCTCCCGGCTCGGCATGAGGGCGTTGGTGGGCCGCCTCCCACG
GGGACTACTTGCAGCAGCAGCAGCAGCAGTAATCAGGTGCCCTCTACTTG
TTGCATGGCCCCTGTCGCTACGGTGCTGTCGTCCGCGCAGGCTACGAACA
ACCAGGCAGCAGAACCGGTAACAACGCCTCCGCTACTCCTCGGCAGCGCG
CGCAGCGGACCTTCACCGCCGCCACCATCGACGCCGTCAACATCTTCGAA
TGGCGCGCCACGGCGGTCGCTGGCTCACGGCGACTGCCCCACGGCTCCCG
GCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCACCGCTGCTGACGGC
GCGGCGGCGGCGGCCGCCCCGCCGTTTCCTTCTCCCCCGTCGCTGTCCCT
CTCCCCGGCCGACAACGTCGAGTCGCCGCCGCCGAGCGCCCCCTGGCTGG
TTGAGAGGGCGCTGTCCATCAAGGCTGCTATCGAAGAGGCTGTCAACAGC
GGTGATGGTGGCGGTGGTGCGGCCAGCGGCGGAGGAGGCGGCGCAGGGGG
TGCGGGTGTGCTATTGCCGGCAGCCCATGAGGCAATCGCCGGGGGCATCG
AGCAGGGCGCGGGAGGACGAGGGGGAAGCGGCGAGGTGTTTCCTCATGGA
GTCCTCGCTAAGGTACATGCTCGTGGCCAAGTAGAAGTCGGATACGAACT
CGCTCAGCAAGTGTTCCGTGAGGTGGCGAACACGGTAGTGTCCCGCACCA
CAGACGGTATGGAGCGCATGTAACATTACGTGTCTGCCTTTCGGCGCACT
CATCGACAAGGATACGGCTCGCTACAACGGGACCCCCCATCACCCCTTAT
CACCCCTCCCCGCCCCCGCCCGCCCGCCCACCCACCCACCTACCGCCAGG
TTCCGCGCTTGGTCGCCGATCTCCACGACGCGCTAGGACGGGCTGTCAGC
ACCAACGAGGCCAGGGCTTGGGTGCGCGCGCTCGATCGCCTTGGAGAGGG
TTTGGACAGGGACCAACTGCTGGAGGCGTGTCTGGTAAGCCGTGAACTTG
TGCATGTGCGTATGGTACGGCACTCGTGGAGGGTATTACGCAGATGTGAT
CCGACAACGCTGCGTTAGATGGCATGCGCGGGTTTTATATGTCTCGACGC
ATCGGCACTCTTTGCATTGTCCTTTCTCTGTTTGGCGTTTGGTAGGCTTT
GCTCCCCGCAAGTCCTGAGTATTTTGCGGTGGGGACGTTTAACCCTTTGT
CAGCCCCGGTCACCCCTCCACCGCCCCTGGCAGGAACACCGTCTTATCCT
GTGTAGCGCGCCTTCTGCGTTTTTCTGTCCGCCCGTCTCGTGCAGGACGT
CTCACGGGACGTGTTGCGGCTAGATGGCTCACCCAGCCCTTCCCGCCCTG
TCAGGGGTGAATCTCCTGCGGATGCGGCAGCGCCCCTGTCCGGCCTTGCG
TCCACGGCACTCGCAGAAGAATCAGAGTTAGGCAAAGGGGCGGCGGAGGC
GGCGGGAGCGGCGATAACCGTCACGGATGCCCTGCCGCGGGGCGGCTCGT
GTCCGGAGAGTGTCTCCCCCACGCCTGCTTCTTGTTCGGCAGTAGTGGAG
GCGCCTGCAGGGACGGCGACAGCAGCAAGGACGCTGGACGCGAACGGGGC
AGTGTTGCCAGCACCGGCGGCTAAGACACCGGTGATGTGGCCGGCATCTT
CACAGATCACAGGTCCTGGAGAAGGAGATGGGCCGGTAACCGTAGCGCTA
GCACAAGCAGAAGCTCCAGCGGTAGCGTCAGATGGGGGGGCAAGACGAAC
AGGCGAGGAGGCCGCGGCGGAGGAGAGTGTCGTCTCGGGGGCGGTGTCAT
TCCTTGGAAACCATCCCCATGGCTCTTCTTCCACAAGCGCCGTGGTGCCC
TTTTCTTCGATTTCGACAGCACAAGCGCCGCCGCCGCCGCCGGGGCCACC
ACCGCCGCCGGAAGCCTGTGAACCATCTGTGTCCCAGGAAAGAGCGGTGC
CGTTTCTCGCGGTAACACCGAGCAAGGCGGTCCTGGCGGCAGCAGCAGCG
AAGGCAAGGGCAGCAGCTAGAGCATCAGCATCAGAAACCACAACAATAGC
AACAGCAGCACCACCAAGACTAGCGCCAGCACCAACGGCAGCAACAGTAC
CAGCACCAGCACCAACACCAGCAGTTGGCGGGGAAAACAACTCGGGAGGG
GACAGCAACGCTAAACGAGAACCGTCGTGGCCGGCCAGCAGCTGTCGCGG
TGGCGTCTCGGCAGACGGGGAGGTTTCAGGGCCAGCACCAGCAACAGCGG
AAGCAGCTGATGCCGCCGCCGGGCATTGCAAGGAGGGAGCGGGAGCGGAG
GCGGAGGAGCGTTGTCCGGCAGCGGCGCGTAATGCCGCCGGGGAAGCGCC
CGCGGTTCCCCGAGGAGACGCGGGTGGTGCTCCTGAAGTTGTTACCTCTC
CGACCGACACGTGCGATTGTGTCGGCATCGCTGCCGCAGACGTTGCAATC
GACTGCGACGTTCCTCCAGATCCCGGCCAAAGCATCGGTAGCAGCGGCTC
TGTGAGCGTCGGCGGCGGCGGTGGGAGTGAGACTGCTTGTGCCCGAGGCG
TTGTTGGCCGCGGGACAGCCGGGAGGGGGAGGAAACAGGGAGTGAGGCGA
AACGCTTCCAAGTTTCCCGATGACGTCATTGCAAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6036:4864..8202+

>mRNA_Ecto-sp13_S_contig6036.16665.1 ID=mRNA_Ecto-sp13_S_contig6036.16665.1|Name=mRNA_Ecto-sp13_S_contig6036.16665.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2403bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6036:4864..8202+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTCGCGTGAAACAACAGCACCACCACAGGCAGCACCTCTGGCGGC
GAGCACCATGGAGGAGGTGGAGCCAGCAAGCCCTCCCAGCAAATTAATCA
GCGGCAACAGACGGATGCAGACGGAAAGCGCACCAGCAGGAACAGCTGCA
ACAGAAACAGCAGCGGCAGTAGATGTGGCGGTTCATGATCATGATGCTTC
ACGAGAGGAAAGAGCACCAGCGAACAAGATTCGGGACGGTTCGACAACTT
CAAACGGCCCTGCACCGCCGCTCCCGGCTCGGCATGAGGGCGTTGGTGGG
CCGCCTCCCACGGGGACTACTTGCAGCAGCAGCAGCAGCAGTAATCAGGT
GCCCTCTACTTGTTGCATGGCCCCTGTCGCTACGGTGCTGTCGTCCGCGC
AGGCTACGAACAACCAGGCAGCAGAACCGGTAACAACGCCTCCGCTACTC
CTCGGCAGCGCGCGCAGCGGACCTTCACCGCCGCCACCATCGACGCCGTC
AACATCTTCGAATGGCGCGCCACGGCGGTCGCTGGCTCACGGCGACTGCC
CCACGGCTCCCGGCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTCACC
GCTGCTGACGGCGCGGCGGCGGCGGCCGCCCCGCCGTTTCCTTCTCCCCC
GTCGCTGTCCCTCTCCCCGGCCGACAACGTCGAGTCGCCGCCGCCGAGCG
CCCCCTGGCTGGTTGAGAGGGCGCTGTCCATCAAGGCTGCTATCGAAGAG
GCTGTCAACAGCGGTGATGGTGGCGGTGGTGCGGCCAGCGGCGGAGGAGG
CGGCGCAGGGGGTGCGGGTGTGCTATTGCCGGCAGCCCATGAGGCAATCG
CCGGGGGCATCGAGCAGGGCGCGGGAGGACGAGGGGGAAGCGGCGAGGTG
TTTCCTCATGGAGTCCTCGCTAAGGTTCCGCGCTTGGTCGCCGATCTCCA
CGACGCGCTAGGACGGGCTGTCAGCACCAACGAGGCCAGGGCTTGGGTGC
GCGCGCTCGATCGCCTTGGAGAGGGTTTGGACAGGGACCAACTGCTGGAG
GCGTGTCTGGACGTCTCACGGGACGTGTTGCGGCTAGATGGCTCACCCAG
CCCTTCCCGCCCTGTCAGGGGTGAATCTCCTGCGGATGCGGCAGCGCCCC
TGTCCGGCCTTGCGTCCACGGCACTCGCAGAAGAATCAGAGTTAGGCAAA
GGGGCGGCGGAGGCGGCGGGAGCGGCGATAACCGTCACGGATGCCCTGCC
GCGGGGCGGCTCGTGTCCGGAGAGTGTCTCCCCCACGCCTGCTTCTTGTT
CGGCAGTAGTGGAGGCGCCTGCAGGGACGGCGACAGCAGCAAGGACGCTG
GACGCGAACGGGGCAGTGTTGCCAGCACCGGCGGCTAAGACACCGGTGAT
GTGGCCGGCATCTTCACAGATCACAGGTCCTGGAGAAGGAGATGGGCCGG
TAACCGTAGCGCTAGCACAAGCAGAAGCTCCAGCGGTAGCGTCAGATGGG
GGGGCAAGACGAACAGGCGAGGAGGCCGCGGCGGAGGAGAGTGTCGTCTC
GGGGGCGGTGTCATTCCTTGGAAACCATCCCCATGGCTCTTCTTCCACAA
GCGCCGTGGTGCCCTTTTCTTCGATTTCGACAGCACAAGCGCCGCCGCCG
CCGCCGGGGCCACCACCGCCGCCGGAAGCCTGTGAACCATCTGTGTCCCA
GGAAAGAGCGGTGCCGTTTCTCGCGGTAACACCGAGCAAGGCGGTCCTGG
CGGCAGCAGCAGCGAAGGCAAGGGCAGCAGCTAGAGCATCAGCATCAGAA
ACCACAACAATAGCAACAGCAGCACCACCAAGACTAGCGCCAGCACCAAC
GGCAGCAACAGTACCAGCACCAGCACCAACACCAGCAGTTGGCGGGGAAA
ACAACTCGGGAGGGGACAGCAACGCTAAACGAGAACCGTCGTGGCCGGCC
AGCAGCTGTCGCGGTGGCGTCTCGGCAGACGGGGAGGTTTCAGGGCCAGC
ACCAGCAACAGCGGAAGCAGCTGATGCCGCCGCCGGGCATTGCAAGGAGG
GAGCGGGAGCGGAGGCGGAGGAGCGTTGTCCGGCAGCGGCGCGTAATGCC
GCCGGGGAAGCGCCCGCGGTTCCCCGAGGAGACGCGGGTGGTGCTCCTGA
AGTTGTTACCTCTCCGACCGACACGTGCGATTGTGTCGGCATCGCTGCCG
CAGACGTTGCAATCGACTGCGACGTTCCTCCAGATCCCGGCCAAAGCATC
GGTAGCAGCGGCTCTGTGAGCGTCGGCGGCGGCGGTGGGAGTGAGACTGC
TTGTGCCCGAGGCGTTGTTGGCCGCGGGACAGCCGGGAGGGGGAGGAAAC
AGGGAGTGAGGCGAAACGCTTCCAAGTTTCCCGATGACGTCATTGCAAAG
GTA
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