prot_Ecto-sp13_S_contig6035.16662.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6035.16662.1
Unique Nameprot_Ecto-sp13_S_contig6035.16662.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length177
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6035.16662.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 320 bits (821), Expect = 2.610e-110
Identity = 157/176 (89.20%), Postives = 165/176 (93.75%), Query Frame = 0 
Query:    1 MFKNVASKAFSGGARGALFGILGGFVLGAVGNVFTDGLSTVDVVCWQDRRGTTKKFADLDVLESFDIYKDLLALHSARECDMEAFNDACRHIQSVVYLYKRFLDRGEDTVSIMDCRKITNYSIMATKSMNALLISCRVNNYPESSDVERSMMQIHLTFEEIINGVRHVSKNTLPEI 176
            MFKN ASKAF GGARGA+FGILGGFVLGAVGNVF DGLSTVDVV W+DRRGTTKKFADL+VLESFDIYKDLL +HSARECDMEAFNDACRHIQSV YLYKRFLD+GED  SIMDCRKITNYSIMATKSMNALLISCR  NYPESSDVE+SMMQ+HLTFEEIINGVRHVSK+ LPEI
Sbjct:    1 MFKNAASKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
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BLAST of mRNA_Ecto-sp13_S_contig6035.16662.1 vs. uniprot
Match: A0A6H5KJD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJD3_9PHAE)

HSP 1 Score: 182 bits (461), Expect = 8.640e-51
Identity = 91/114 (79.82%), Postives = 97/114 (85.09%), Query Frame = 0 
Query:   51 GTTKKFADLDVLESFDIYKDLLALHSARECDMEAFNDACRHIQSVVYLYKRFLDRGEDTVSIMDCRKITNYSIMATKSMNALLISCRVNNYPESSDVERSMMQIHLTFEEIING 164
            G  +KFADL+VLESFDIYKDLL LHSARECD EAF DACRHIQSV+YLY RFL     TVSIM   KITNYSIMATKSMNALLISCR  NYP+SSDVE+SMM IHLTFE+IING
Sbjct:  155 GQNQKFADLEVLESFDIYKDLLELHSARECDEEAFCDACRHIQSVIYLYNRFLVDKTRTVSIMKSHKITNYSIMATKSMNALLISCRAKNYPQSSDVEKSMMHIHLTFEDIING 268
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6035.16662.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 80.5 bits (197), Expect = 9.160e-16
Identity = 54/173 (31.21%), Postives = 89/173 (51.45%), Query Frame = 0 
Query:    7 SKAFSGGARGALFGILGGFVLGAVGNVFTDGLSTVDVVCWQDRRGTTKKFADLDVLESFDIYKDLLALHSARECDMEAFNDACRHIQSVVYLYKRFLDR---GEDTVSIMDCRKITNYSIMATKSMNALLISCRVNNYPESSDVERSMMQIHLTFEEIINGVRHVSKNTLPEI 176
            S    G  +G L+G+ GG  LGA G +      T + + W   +G   +   L  +     +  ++  H  R  +  AFN+A R+IQ+V+ +Y           D   IM   K+TNY++ A+K+M A+ +S   +++ +++  E +MM+I LT EE IN +R  SK +LP I
Sbjct:    3 SALMKGCFKGGLYGLCGGIFLGAAGALTPS--QTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTR--NERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16662.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Q8QKW1_ESV1K2.610e-11089.20EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
A0A6H5KJD3_9PHAE8.640e-5179.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
Q6XM43_9PHYC9.160e-1631.21FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..15
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 28..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 16..27
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 36..176
NoneNo IPR availableTMHMMTMhelixcoord: 12..34

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6035contigEcto-sp13_S_contig6035:6420..6950 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6035.16662.1mRNA_Ecto-sp13_S_contig6035.16662.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6035 6420..6950 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6035.16662.1 ID=prot_Ecto-sp13_S_contig6035.16662.1|Name=mRNA_Ecto-sp13_S_contig6035.16662.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MFKNVASKAFSGGARGALFGILGGFVLGAVGNVFTDGLSTVDVVCWQDRR
GTTKKFADLDVLESFDIYKDLLALHSARECDMEAFNDACRHIQSVVYLYK
RFLDRGEDTVSIMDCRKITNYSIMATKSMNALLISCRVNNYPESSDVERS
MMQIHLTFEEIINGVRHVSKNTLPEI*
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