mRNA_Ecto-sp13_S_contig6035.16659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6035.16659.1
Unique NamemRNA_Ecto-sp13_S_contig6035.16659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6035.16659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6035contigEcto-sp13_S_contig6035:3039..3587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size549
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionEsV-1-38
Ec32 orthologEc-06_006400.1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.6052012-CDS-Ecto-sp13_S_contig6035:3038..35871681463840.6052012-CDS-Ecto-sp13_S_contig6035:3038..3587Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6035 3039..3587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6035.16659.1prot_Ecto-sp13_S_contig6035.16659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6035 3039..3587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6035.16659.1

>prot_Ecto-sp13_S_contig6035.16659.1 ID=prot_Ecto-sp13_S_contig6035.16659.1|Name=mRNA_Ecto-sp13_S_contig6035.16659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp
SSRKKDWCQRCARYGHLKRDCMENYSVYGDDLRKKRCGLCGLFGHKDRSC
LETTTVHGDKIDHRASKRLKVDDSTKTKAATGMYDRVERSLNAERKQREQ
PVRSKESSSGVDADKAAVLEKGVEQKKVASGSDSSSSSSSSSSSSSCSSS
SSDSSSDSSSDSESDSPTSGLWYNSDDEFLNI*
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mRNA from alignment at Ecto-sp13_S_contig6035:3039..3587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6035.16659.1 ID=mRNA_Ecto-sp13_S_contig6035.16659.1|Name=mRNA_Ecto-sp13_S_contig6035.16659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3039..3587- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCACGGAAAAAAGATTGGTGCCAGCGTTGCGCGCGGTACGGACACCT
GAAGCGCGACTGCATGGAAAACTACAGCGTGTACGGCGACGACCTCCGCA
AAAAGAGATGCGGCCTCTGTGGCCTCTTTGGACACAAAGATCGATCATGC
CTCGAGACGACGACGGTGCACGGCGATAAAATTGATCACCGGGCATCGAA
GCGACTGAAAGTTGACGATAGCACAAAGACCAAAGCCGCCACCGGCATGT
ACGACAGGGTAGAGCGTTCGTTGAACGCAGAGAGGAAGCAGAGGGAGCAG
CCCGTTCGTAGCAAAGAGAGCAGTAGCGGTGTAGACGCAGACAAAGCGGC
GGTGCTTGAGAAAGGGGTAGAGCAGAAGAAAGTCGCAAGTGGGTCGGATT
CGTCTTCGTCTTCGTCTTCGTCTTCGTCTTCGTCTTCGTGTTCGTCTTCG
TCTTCGGATTCGTCTTCGGATTCGTCTTCGGATTCAGAATCAGATTCGCC
TACGAGTGGTCTGTGGTACAACTCGGATGACGAGTTCCTCAACATTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6035:3039..3587-

>mRNA_Ecto-sp13_S_contig6035.16659.1 ID=mRNA_Ecto-sp13_S_contig6035.16659.1|Name=mRNA_Ecto-sp13_S_contig6035.16659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6035:3039..3587- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCACGGAAAAAAGATTGGTGCCAGCGTTGCGCGCGGTACGGACACCT
GAAGCGCGACTGCATGGAAAACTACAGCGTGTACGGCGACGACCTCCGCA
AAAAGAGATGCGGCCTCTGTGGCCTCTTTGGACACAAAGATCGATCATGC
CTCGAGACGACGACGGTGCACGGCGATAAAATTGATCACCGGGCATCGAA
GCGACTGAAAGTTGACGATAGCACAAAGACCAAAGCCGCCACCGGCATGT
ACGACAGGGTAGAGCGTTCGTTGAACGCAGAGAGGAAGCAGAGGGAGCAG
CCCGTTCGTAGCAAAGAGAGCAGTAGCGGTGTAGACGCAGACAAAGCGGC
GGTGCTTGAGAAAGGGGTAGAGCAGAAGAAAGTCGCAAGTGGGTCGGATT
CGTCTTCGTCTTCGTCTTCGTCTTCGTCTTCGTCTTCGTGTTCGTCTTCG
TCTTCGGATTCGTCTTCGGATTCGTCTTCGGATTCAGAATCAGATTCGCC
TACGAGTGGTCTGTGGTACAACTCGGATGACGAGTTCCTCAACATTTAA
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