mRNA_Ecto-sp13_S_contig60346.16657.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60346.16657.1
Unique NamemRNA_Ecto-sp13_S_contig60346.16657.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60346.16657.1 vs. uniprot
Match: D7G613_ECTSI (PUB domain, zinc finger protein Thioredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G613_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.590e-17
Identity = 46/50 (92.00%), Postives = 48/50 (96.00%), Query Frame = 1 
Query:    1 QTSHGNFSESTDAVKALTPEEKEAKLARMKAIIAERRAARGEEEKVDHVK 150
            +TSH NFSEST+ VKALTPEEKEAKLARMKAIIAERRAARGEEEKVDHVK
Sbjct:  318 KTSHDNFSESTEEVKALTPEEKEAKLARMKAIIAERRAARGEEEKVDHVK 367
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BLAST of mRNA_Ecto-sp13_S_contig60346.16657.1 vs. uniprot
Match: A0A7S2V754_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V754_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.310e-9
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 QTSHGNFSESTDAVKALTPEEKEAKLARMKAIIAERRAARGEEEKVDHV 147
            +T H NF EST+A+K L+PEEK  K+  +KA IA RRAAR EEEKVDHV
Sbjct:   77 KTGHANFEESTEAIKPLSPEEKAKKIEELKAKIAARRAAREEEEKVDHV 125
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60346.16657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G613_ECTSI1.590e-1792.00PUB domain, zinc finger protein Thioredoxin n=1 Ta... [more]
A0A7S2V754_9STRA5.310e-965.31Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60346contigEcto-sp13_S_contig60346:629..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score85.5
Seed ortholog evalue7.7e-15
Seed eggNOG ortholog2880.D7G613
Preferred nameUBXN1
Model size150
KEGG koko:K01456,ko:K03671
KEGG Pathwayko04141,ko04621,ko05418,map04141,map04621,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006457,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010466,GO:0010498,GO:0010605,GO:0012505,GO:0016020,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0030425,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031593,GO:0031625,GO:0031984,GO:0032182,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0034098,GO:0036435,GO:0036477,GO:0042175,GO:0042176,GO:0042177,GO:0042995,GO:0043005,GO:0043025,GO:0043086,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045861,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051117,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0051603,GO:0052547,GO:0060255,GO:0061136,GO:0065007,GO:0065009,GO:0071704,GO:0071796,GO:0080090,GO:0080134,GO:0080135,GO:0090085,GO:0090086,GO:0097447,GO:0097458,GO:0098796,GO:0098827,GO:0120025,GO:0120038,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901799,GO:1903050,GO:1903051,GO:1903093,GO:1903094,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903573,GO:1904292,GO:1904293,GO:1905897,GO:2000058,GO:2000059,GO:2000152,GO:2000157
Exons1
EggNOG free text desc.K6-linked polyubiquitin modification-dependent protein binding
EggNOG OGsKOG0908@1,KOG0908@2759,KOG2689@1,KOG2689@2759
EC3.5.1.52
Cds size150
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.5044682-CDS-Ecto-sp13_S_contig60346:628..7781681463840.5044682-CDS-Ecto-sp13_S_contig60346:628..778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60346 629..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60346.16657.1prot_Ecto-sp13_S_contig60346.16657.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60346 629..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60346.16657.1

>prot_Ecto-sp13_S_contig60346.16657.1 ID=prot_Ecto-sp13_S_contig60346.16657.1|Name=mRNA_Ecto-sp13_S_contig60346.16657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
QTSHGNFSESTDAVKALTPEEKEAKLARMKAIIAERRAARGEEEKVDHVK
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mRNA from alignment at Ecto-sp13_S_contig60346:629..778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60346.16657.1 ID=mRNA_Ecto-sp13_S_contig60346.16657.1|Name=mRNA_Ecto-sp13_S_contig60346.16657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60346:629..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTTCCCACGGCAATTTCAGCGAGAGCACCGATGCAGTGAAGGCCCT
GACCCCCGAGGAGAAGGAGGCGAAGCTAGCGAGGATGAAGGCGATCATCG
CCGAAAGGAGGGCAGCCAGAGGGGAGGAGGAGAAGGTCGACCACGTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60346:629..778+

>mRNA_Ecto-sp13_S_contig60346.16657.1 ID=mRNA_Ecto-sp13_S_contig60346.16657.1|Name=mRNA_Ecto-sp13_S_contig60346.16657.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60346:629..778+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTTCCCACGGCAATTTCAGCGAGAGCACCGATGCAGTGAAGGCCCT
GACCCCCGAGGAGAAGGAGGCGAAGCTAGCGAGGATGAAGGCGATCATCG
CCGAAAGGAGGGCAGCCAGAGGGGAGGAGGAGAAGGTCGACCACGTGAAG
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