mRNA_Ecto-sp13_S_contig60316.16654.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60316.16654.1
Unique NamemRNA_Ecto-sp13_S_contig60316.16654.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60316.16654.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.480e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:   70 SRNGGTRNAKVNGTDEVAADLLRRSERYYLRGVSEVSR 183
            S  GGTR A+VNGTDEVAADLLRRSERYYLRGVSEVSR
Sbjct: 3960 SGEGGTRKAEVNGTDEVAADLLRRSERYYLRGVSEVSR 3997
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BLAST of mRNA_Ecto-sp13_S_contig60316.16654.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 6.120e-11
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:   70 SRNGGTRNAKVNGTDEVAADLLRRSERYYLRGVSEVSR 183
            S +GGTR AKVNGTD+VAADLLRRSERYYLRGVSE+SR
Sbjct: 3127 SGDGGTRKAKVNGTDDVAADLLRRSERYYLRGVSELSR 3164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60316.16654.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL28_ECTSI4.480e-1189.47Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE6.120e-1186.84Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60316contigEcto-sp13_S_contig60316:128..312 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue3.5e-09
Seed eggNOG ortholog2880.D7FL28
Model size187
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
Cds size183
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463840.3789206-CDS-Ecto-sp13_S_contig60316:127..3101681463840.3789206-CDS-Ecto-sp13_S_contig60316:127..310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60316 128..310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60316.16654.1prot_Ecto-sp13_S_contig60316.16654.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60316 128..310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60316.16654.1

>prot_Ecto-sp13_S_contig60316.16654.1 ID=prot_Ecto-sp13_S_contig60316.16654.1|Name=mRNA_Ecto-sp13_S_contig60316.16654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
STSCRYRSPFAKTASPASTPPGSSRNGGTRNAKVNGTDEVAADLLRRSER
YYLRGVSEVSR
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mRNA from alignment at Ecto-sp13_S_contig60316:128..312+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60316.16654.1 ID=mRNA_Ecto-sp13_S_contig60316.16654.1|Name=mRNA_Ecto-sp13_S_contig60316.16654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=185bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60316:128..312+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACGTCATGTCGCTATCGCAGCCCTTTTGCGAAGACGGCCTCGCCGGC
TTCGACACCGCCTGGCTCTTCTCGGAACGGCGGAACCCGGAACGCTAAGG
TTAATGGCACCGATGAGGTCGCTGCGGATCTTTTGAGAAGGAGCGAGCGG
TACTACCTTCGTGGCGTAAGCGAAGTTTCGAGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60316:128..312+

>mRNA_Ecto-sp13_S_contig60316.16654.1 ID=mRNA_Ecto-sp13_S_contig60316.16654.1|Name=mRNA_Ecto-sp13_S_contig60316.16654.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60316:128..312+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCCACGTCATGTCGCTATCGCAGCCCTTTTGCGAAGACGGCCTCGCCGGC
TTCGACACCGCCTGGCTCTTCTCGGAACGGCGGAACCCGGAACGCTAAGG
TTAATGGCACCGATGAGGTCGCTGCGGATCTTTTGAGAAGGAGCGAGCGG
TACTACCTTCGTGGCGTAAGCGAAGTTTCGAGG
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