mRNA_Ecto-sp13_S_contig603.16650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig603.16650.1
Unique NamemRNA_Ecto-sp13_S_contig603.16650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig603.16650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig603contigEcto-sp13_S_contig603:4547..6936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size837
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionNC2alpha class protein with histone-like transcription factor (NF-YC subunit) domain
Ec32 orthologEc-01_000530.1
Cds size735
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig603.16650.1prot_Ecto-sp13_S_contig603.16650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig603 4616..6903 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.6180065-UTR-Ecto-sp13_S_contig603:4546..46151681463839.6180065-UTR-Ecto-sp13_S_contig603:4546..4615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig603 4547..4615 -
1681463839.6898813-UTR-Ecto-sp13_S_contig603:6903..69361681463839.6898813-UTR-Ecto-sp13_S_contig603:6903..6936Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig603 6904..6936 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.6301577-CDS-Ecto-sp13_S_contig603:4615..50301681463839.6301577-CDS-Ecto-sp13_S_contig603:4615..5030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 4616..5030 -
1681463839.640397-CDS-Ecto-sp13_S_contig603:5846..59941681463839.640397-CDS-Ecto-sp13_S_contig603:5846..5994Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 5847..5994 -
1681463839.6537774-CDS-Ecto-sp13_S_contig603:6571..66441681463839.6537774-CDS-Ecto-sp13_S_contig603:6571..6644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 6572..6644 -
1681463839.6794496-CDS-Ecto-sp13_S_contig603:6804..69031681463839.6794496-CDS-Ecto-sp13_S_contig603:6804..6903Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig603 6805..6903 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig603.16650.1

>prot_Ecto-sp13_S_contig603.16650.1 ID=prot_Ecto-sp13_S_contig603.16650.1|Name=mRNA_Ecto-sp13_S_contig603.16650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MASPRTTTGEKTSSPKLTRERDRKMGSVPPLPLSRVKAVAQNDESIGKMS
VQATCMIARCTDAFLADLVEASVNRARAAGHREPDKKVRKCPDASKSVPQ
QVLPEDVRQAVTEEERFDFLRPVLSPAQDSSKYLRAGGAKRTRKGGATSA
RAGAKAVGGAKKGKERRDSEAAERAASWMDGESDPIESGGAIASTAGVGS
NVLALAGLDEEGRRHALLGGMVPTVTPAACAILGDDDDEDFDNY*
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mRNA from alignment at Ecto-sp13_S_contig603:4547..6936-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig603.16650.1 ID=mRNA_Ecto-sp13_S_contig603.16650.1|Name=mRNA_Ecto-sp13_S_contig603.16650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2390bp|location=Sequence derived from alignment at Ecto-sp13_S_contig603:4547..6936- (Ectocarpus species13 EcNAP12_S_4_19m)
CGGGAGATCACACAATCACCACGCACGGGCGAGATGGCAAGCCCACGCAC
CACCACAGGCGAGAAGACAAGCTCGCCGAAATTGACGAGAGAGCGCGACC
GAAAAATGGGATCCGTACCACCTCTTCCATTGGTAAGAAAGAGCGAGAGT
GATCACACGGCACAATGATGATCATATCCCTCCGCCGACGTACCCCCGGC
CATATGTCGGAGACCTATGCTTTGCTGTACCGACTCAATCATCTGCCGAC
AACGCCGCTGCCCCTACTGCTGTTTTCCGTTGCGCTTTTCAGTCGAGGGT
GAAAGCTGTAGCGCAGAACGACGAGTCGATCGGCAAGATGTCAGTGCAAG
CAACGTGCATGATAGGTGAGAACGAGCGGGTGCCGTTTGCGCTGACTCTC
TGTAACCTAGGACCACGCTTCTTCCACTAGGGCTGTTCGCACATTAAGCG
TCCTGTTTTGGTGGTGTTTTTTCTTGATGCTTCACATGGTCGTGAGCGGT
AGATGGTCCCGATCCGCTCTTCTAACGTCAGCCGTAGACTAGACTACAGC
AGTAAATAAAGACCACCAGCAGAAGCGGCAGCAGCAGTACCAGCCGGCAA
ACGCCAGTTTCTTACCATTTTGTCGCCAACGCCGAGCATAGACTGCAGAC
TACCACTGATGTACTGCATGATCCACCGCTGGGCTGTTGCACTTTTCATC
ATTTTGTGGGAGATTTTGAGCCTGTCGCGCCGGCCGGTACTGCTGCACCT
GCCGAACCAGAGTTTTTGATGGTACTGTATGATGCACGTGTCTTCGCTTG
TCAGAGCAGCAGCCTGGCCGGCTTCACCCAGCGCTCCACACTATGCTGTC
GCTCTAAACCATCATTATTGAAAGTCCGTTCAACTCTTGACTTCCCTCTT
TTGTGCACGCGGCGTACTTGTTGGCTTCCGAGCGGGCAACAGCTAGATGC
ACCGACGCTTTCTTGGCTGACCTGGTCGAGGCCTCTGTCAACAGGGCGAG
GGCAGCGGGGCACCGCGAGCCCGACAAAAAAGTTAGGAAATGCCCGGATG
CGTCAAAATCTGTCCCGCAGCAGGTTCTTCCGGAAGACGTGTGAGTACAA
CGGTATGATCGAGAGTTCGCACGAACTAAGTTCGTGGTTGCACGGAGCAA
GAGCAACTGGCCAAGGCATGCCGAGATATGTAGTCAACTCTTTCGCTACC
AAATCGGTGGAAGATGGGATTGGTGGAGTGCACCGCGCAAAAGTGGCGCA
CATCACCACAATCATCCGTCGCGAAATTCCGACCGCTAGTTGGCTCTCCA
ACAGCCCAAGATAAACCGAAGAAACAAACCAGAAAAATCATATTCTCCCG
CATCTTACAGACGATAGTCTCCGTAGGTATGTGCCCAATATTGGTCCACC
ATTGTACAATAATTGTGTGCGGGTTTTTCTAAAGAGATTCTCGCATGCGT
ACTGGGGATCGTTGGTGTTGTTTGTTCGCACGGCGGCAAAGTACACCTTG
GCAGGACTCTGTATAACGGTTGTACATACCTCTGCGATGTCACGTGGGTT
AAGGTTGCGATTCACCGCACCCTGTGCGATGACTCCGGACCGGACGATGA
TACCGGACCGTGCGGTGACTCGCAACCTGACGGTACCTGGCATCGTGGCA
AGTTCGTTCAGACCCCCCCCCTGCCGCCGGGCGGGATGTGAGATCGACAG
GAAATATAGGAGAGAAAAAATTTTGAGCCACCGTCGGCAAAGTACTGCAG
GAACGAACGATTCGCCTATCTGTGATTGGTCTTGTGGGGAGAATACTCTG
TCCGCTCGAGGACGTGTGTCCGATGGTCTAACAACCAAGGCAAGTAAAGT
ATGAGTACGCCCGCCCTGCCGCTCTCCCCATATCTGGGCCCGTGGTGTCG
ATACAGGCGGCAAGCTGTAACCGAGGAAGAACGATTCGACTTCTTGCGAC
CGGTGCTAAGCCCAGCACAAGATAGCAGTAAATATCTCCGTGCCGGTGGG
GCAAAACGGACACGGAAAGGCGGGGCTACCTCCGCTCGAGCAGGAGCAAA
AGCCGTCGGGGGGGCAAAGAAAGGCAAGGAGCGAAGGGACTCGGAGGCTG
CGGAGAGGGCAGCAAGTTGGATGGATGGCGAGTCGGATCCTATCGAATCA
GGTGGCGCAATTGCCTCGACGGCAGGAGTAGGTAGTAATGTGTTGGCGCT
GGCGGGGCTTGACGAGGAGGGCCGACGACACGCTTTGTTAGGGGGGATGG
TGCCTACAGTTACTCCAGCCGCTTGCGCAATATTGGGGGACGATGACGAC
GAAGACTTCGACAACTACTGACAAACTAGTGCCTCCAGGGAGTGACTCCT
CCATCTTTGTAGGCACGGACGGGGTGCATGAGTAAATAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig603:4547..6936-

>mRNA_Ecto-sp13_S_contig603.16650.1 ID=mRNA_Ecto-sp13_S_contig603.16650.1|Name=mRNA_Ecto-sp13_S_contig603.16650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig603:4547..6936- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAAGCCCACGCACCACCACAGGCGAGAAGACAAGCTCGCCGAAATT
GACGAGAGAGCGCGACCGAAAAATGGGATCCGTACCACCTCTTCCATTGT
CGAGGGTGAAAGCTGTAGCGCAGAACGACGAGTCGATCGGCAAGATGTCA
GTGCAAGCAACGTGCATGATAGCTAGATGCACCGACGCTTTCTTGGCTGA
CCTGGTCGAGGCCTCTGTCAACAGGGCGAGGGCAGCGGGGCACCGCGAGC
CCGACAAAAAAGTTAGGAAATGCCCGGATGCGTCAAAATCTGTCCCGCAG
CAGGTTCTTCCGGAAGACGTGCGGCAAGCTGTAACCGAGGAAGAACGATT
CGACTTCTTGCGACCGGTGCTAAGCCCAGCACAAGATAGCAGTAAATATC
TCCGTGCCGGTGGGGCAAAACGGACACGGAAAGGCGGGGCTACCTCCGCT
CGAGCAGGAGCAAAAGCCGTCGGGGGGGCAAAGAAAGGCAAGGAGCGAAG
GGACTCGGAGGCTGCGGAGAGGGCAGCAAGTTGGATGGATGGCGAGTCGG
ATCCTATCGAATCAGGTGGCGCAATTGCCTCGACGGCAGGAGTAGGTAGT
AATGTGTTGGCGCTGGCGGGGCTTGACGAGGAGGGCCGACGACACGCTTT
GTTAGGGGGGATGGTGCCTACAGTTACTCCAGCCGCTTGCGCAATATTGG
GGGACGATGACGACGAAGACTTCGACAACTACTGA
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