prot_Ecto-sp13_S_contig603.16650.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig603.16650.1
Unique Nameprot_Ecto-sp13_S_contig603.16650.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length245
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig603.16650.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009072Histone-foldGENE3D1.10.20.10coord: 5..125
e-value: 2.1E-14
score: 55.7
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 13..126
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 31..80
e-value: 1.3E-4
score: 22.1
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 32..172
NoneNo IPR availablePANTHERPTHR10252:SF5DR1-ASSOCIATED COREPRESSORcoord: 32..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig603contigEcto-sp13_S_contig603:4616..6903 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig603.16650.1mRNA_Ecto-sp13_S_contig603.16650.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig603 4547..6936 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig603.16650.1 ID=prot_Ecto-sp13_S_contig603.16650.1|Name=mRNA_Ecto-sp13_S_contig603.16650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MASPRTTTGEKTSSPKLTRERDRKMGSVPPLPLSRVKAVAQNDESIGKMS
VQATCMIARCTDAFLADLVEASVNRARAAGHREPDKKVRKCPDASKSVPQ
QVLPEDVRQAVTEEERFDFLRPVLSPAQDSSKYLRAGGAKRTRKGGATSA
RAGAKAVGGAKKGKERRDSEAAERAASWMDGESDPIESGGAIASTAGVGS
NVLALAGLDEEGRRHALLGGMVPTVTPAACAILGDDDDEDFDNY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009072Histone-fold
IPR003958CBFA_NFYB_domain