prot_Ecto-sp13_S_contig6028.16647.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig6028.16647.1
Unique Nameprot_Ecto-sp13_S_contig6028.16647.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length269
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6028.16647.1 vs. uniprot
Match: D8LBK1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK1_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.100e-77
Identity = 179/248 (72.18%), Postives = 185/248 (74.60%), Query Frame = 0 
Query:   22 MSRVGIVSSVELETMTTTGMHNGRGVVVYECAKGVRDALRAFNDKTMVIDARLVAVSTTKWPTVGHFAGEFNFLYTFQVARERENALMELSQLGASLGGNLVQAWPAPPGAVVLACSTLVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXYKKRGRRKGRNKSASVKDGPPTXXXXXXXXXXXXXXRTIAVGRVSRRTTKKELREHFETVASVEAVILLMGKGKLPQEGYVTFTTQAGASKAAQYLDGS 269
            MSRVGIVSSVELETMTTTGMHNGRGVVVYE AKG RDALR FNDKTMVIDARLVAV+TTKWPTVGHFA   N        R R    +EL+Q GA                VVLACSTL+GD   XXXXXXXXXXXXXXXXXXXXXXXX              S KDGPPTXXXXXXXXXX    RT+AVGRV RRTTKKELREHFETVASVEAV L+ GKGKLPQEGYVTF TQAGASKA QYLDGS
Sbjct:    1 MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVIDARLVAVATTKWPTVGHFAATIN-----HCGRSRRGPQVELTQAGA----------------VVLACSTLLGDGDGXXXXXXXXXXXXXXXXXXXXXXXXX------------XSGKDGPPTXXXXXXXXXXEGDGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFMTQAGASKAVQYLDGS 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6028.16647.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK1_ECTSI5.100e-7772.18RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 3..78
e-value: 1.5E-7
score: 41.1
coord: 208..269
e-value: 0.18
score: 13.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 4..67
e-value: 3.7E-6
score: 26.7
coord: 210..268
e-value: 2.4E-7
score: 30.5
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 207..269
score: 10.599
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 2..82
score: 11.145
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 1..81
e-value: 3.5E-10
score: 42.0
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 160..269
e-value: 8.2E-11
score: 44.1
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 2..269
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 148..268
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6028contigEcto-sp13_S_contig6028:4997..8167 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6028.16647.1mRNA_Ecto-sp13_S_contig6028.16647.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig6028 4997..8167 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig6028.16647.1 ID=prot_Ecto-sp13_S_contig6028.16647.1|Name=mRNA_Ecto-sp13_S_contig6028.16647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
ERTVFVANLPFQASPCRVRQVMSRVGIVSSVELETMTTTGMHNGRGVVVY
ECAKGVRDALRAFNDKTMVIDARLVAVSTTKWPTVGHFAGEFNFLYTFQV
ARERENALMELSQLGASLGGNLVQAWPAPPGAVVLACSTLVGDGDGDGRG
GGGGGGSGGDGASSGGGGGGYKKRGRRKGRNKSASVKDGPPTKRARGGGG
GAEGDGRTIAVGRVSRRTTKKELREHFETVASVEAVILLMGKGKLPQEGY
VTFTTQAGASKAAQYLDGS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf