mRNA_Ecto-sp13_S_contig6028.16647.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6028.16647.1
Unique NamemRNA_Ecto-sp13_S_contig6028.16647.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6028.16647.1 vs. uniprot
Match: D8LBK1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK1_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 5.100e-77
Identity = 179/248 (72.18%), Postives = 185/248 (74.60%), Query Frame = 1 
Query:   64 MSRVGIVSSVELETMTTTGMHNGRGVVVYECAKGVRDALRAFNDKTMVIDARLVAVSTTKWPTVGHFAGEFNFLYTFQVARERENALMELSQLGASLGGNLVQAWPAPPGAVVLACSTLVGDXXXXXXXXXXXXXXXXXXXXXXXXXXXYKKRGRRKGRNKSASVKDGPPTXXXXXXXXXXXXXXRTIAVGRVSRRTTKKELREHFETVASVEAVILLMGKGKLPQEGYVTFTTQAGASKAAQYLDGS 807
            MSRVGIVSSVELETMTTTGMHNGRGVVVYE AKG RDALR FNDKTMVIDARLVAV+TTKWPTVGHFA   N        R R    +EL+Q GA                VVLACSTL+GD   XXXXXXXXXXXXXXXXXXXXXXXX              S KDGPPTXXXXXXXXXX    RT+AVGRV RRTTKKELREHFETVASVEAV L+ GKGKLPQEGYVTF TQAGASKA QYLDGS
Sbjct:    1 MSRVGIVSSVELETMTTTGMHNGRGVVVYETAKGARDALRGFNDKTMVIDARLVAVATTKWPTVGHFAATIN-----HCGRSRRGPQVELTQAGA----------------VVLACSTLLGDGDGXXXXXXXXXXXXXXXXXXXXXXXXX------------XSGKDGPPTXXXXXXXXXXEGDGRTVAVGRVPRRTTKKELREHFETVASVEAVSLVTGKGKLPQEGYVTFMTQAGASKAVQYLDGS 215
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6028.16647.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK1_ECTSI5.100e-7772.18RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6028contigEcto-sp13_S_contig6028:4997..8167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size809
Hectar predicted targeting categoryother localisation
Exons6
Cds size807
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6028.16647.1prot_Ecto-sp13_S_contig6028.16647.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6028 4997..8167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.4136748-CDS-Ecto-sp13_S_contig6028:4996..50571681463839.4136748-CDS-Ecto-sp13_S_contig6028:4996..5057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 4997..5057 -
1681463839.42836-CDS-Ecto-sp13_S_contig6028:5551..56131681463839.42836-CDS-Ecto-sp13_S_contig6028:5551..5613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 5552..5613 -
1681463839.4385552-CDS-Ecto-sp13_S_contig6028:5878..61901681463839.4385552-CDS-Ecto-sp13_S_contig6028:5878..6190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 5879..6190 -
1681463839.4493582-CDS-Ecto-sp13_S_contig6028:6594..66761681463839.4493582-CDS-Ecto-sp13_S_contig6028:6594..6676Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 6595..6676 -
1681463839.4599636-CDS-Ecto-sp13_S_contig6028:7585..77381681463839.4599636-CDS-Ecto-sp13_S_contig6028:7585..7738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 7586..7738 -
1681463839.4687915-CDS-Ecto-sp13_S_contig6028:8030..81671681463839.4687915-CDS-Ecto-sp13_S_contig6028:8030..8167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6028 8031..8167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6028.16647.1

>prot_Ecto-sp13_S_contig6028.16647.1 ID=prot_Ecto-sp13_S_contig6028.16647.1|Name=mRNA_Ecto-sp13_S_contig6028.16647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=269bp
ERTVFVANLPFQASPCRVRQVMSRVGIVSSVELETMTTTGMHNGRGVVVY
ECAKGVRDALRAFNDKTMVIDARLVAVSTTKWPTVGHFAGEFNFLYTFQV
ARERENALMELSQLGASLGGNLVQAWPAPPGAVVLACSTLVGDGDGDGRG
GGGGGGSGGDGASSGGGGGGYKKRGRRKGRNKSASVKDGPPTKRARGGGG
GAEGDGRTIAVGRVSRRTTKKELREHFETVASVEAVILLMGKGKLPQEGY
VTFTTQAGASKAAQYLDGS
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mRNA from alignment at Ecto-sp13_S_contig6028:4997..8167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6028.16647.1 ID=mRNA_Ecto-sp13_S_contig6028.16647.1|Name=mRNA_Ecto-sp13_S_contig6028.16647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3171bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6028:4997..8167- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGCACGGTGTTCGTGGCTAACCTGCCGTTCCAGGCATCGCCTTGTCG
AGTGCGACAGGTGATGTCCCGCGTGGGCATCGTCTCGAGCGTTGAGCTCG
AGACAATGACCACGACGGGCATGCACAACGGGCGAGGGTGAGTGCGTTTC
AAGTCCAGCAGTCAGCGGTGCATGCATGGGTACACGAAAATTCTCGTTGT
TTCTGTTTTTGCGGTGCGGCGGATGTTTTACCATGTGGTCGTGGCGGGAT
GGCGAACACGCACACGGCACGAACCAAGCCAGGGCTCTCTGCTACTGCCT
CGAGGCACTGCTATAGTAGTCTCGTTTGGCGTGTTGCAGTGTCACGTCCC
GGTCGCTTTCATCGCATGCCGAAGATGACACTCCACACGCCCACGCACAC
AACCGCCGCACGGCAAACCAAACGGGCAGGGTCGTGGTCTACGAGTGCGC
AAAAGGGGTGCGGGATGCTCTCCGTGCCTTCAACGACAAGACGATGGTGA
TCGACGCGCGCCTCGTCGCCGTCTCCACTACCAAATGGCCCACGGTGGGG
CACTTCGCCGGTGAGTTTAATTTTCTGTACACGCTAGATAGACTTGCTCC
AAGTCGACAAAGAGTACGATTCCCTGTTCCAACGTTCCTAGCAGTGGGTC
AGTTTTTTCCGTTTCTACGATAGTGCGCTCTCGCCTCGTGTGGCCGACTT
TTATCCCCATCGAAACCTCGGCTTTTCGAAAGCTTTCACTTTTTAGGTCG
AAATGAACCATGTTCGCTTCTACAAAATAGCGCATGTGCGCTAACAATTT
TCGTCCCAAGGAGTTGAGTTGGGCAGTCGAAAATACTGCAGATCACGTTG
TTACGCCGCCGCCTCCTTTTACGCCTCTTGCTGTCCTTGCAAGTGCGTAC
CTCCCTTACATGTTCAAGGCTCAAGTGGTCGGGCGCTTTCAAGACACATC
GTGTAGCTTTTATCTCCATTGATGTTTAGCCGATACAGAAGTTGAATCGT
TCTCACCGACAAGATGCCTGAACCCCGCCTCCCCCCCTACCCTCCGCCAT
TCACACCGCCACCCGCTTTACGGCGGTGCTCCTGGTTTGCCAAACTTGAA
AAACAAAAGCCACCATCAACCACTGCGGCAGTTTCCGCAGGGGGCCGCAG
GTCGAACTGACGCAGGTTTGGAGTCTGTTCGGCGAAACCACGTACCGCCC
AACAGCGGTGTTTCCGTTGTCCGGCAACTGCTGGGTTATGACGTGAGTGG
GGGTCGTAGTAAACGGTTCGTGTTTTCTTGCGTTTCTTGGCCATGGTATT
TGCTTTTGCCCAGGTTGCTTGCTGTTGGGTGGCCGGTCGACCGGTTCTGA
CTCGACGTGCTGTTTCGCCATACGCATCCCTCCTTTTGTGTTTTGGTGTT
TGTGCGCTTGTTGTATGCGAGAGCTCGACGAGCGCCGTGCCCTCAGCGCG
CATGTTACTAGTGCTTTTGCTGTTGACTTAATGATCCGCAGGTTTCAAGT
CGCGCGGGAGCGCGAGAACGCATTAATGGAGCTCAGCCAGTTGGGAGCGT
CCCTCGGTGGGAACCTTGTTCAGGTTTGTGTGTGAGGGGGGTGGGGGAAA
GGCGAGCAGGCGCGTTCGTTGTACGTGAGAAACGACTAGACACAGACCAC
AACCTCGAAATCAAAATTGTTCAAGCCGATTATTTGAGACATGTAGGAAC
TATATATTATGATATGCGCTGTGCGTCATTATTGTTGGCAGAAAAGTCGA
CGTCTCTAGGGCATGTCAACAGACCCAGGCGACTTTGACGAGTGACGCAT
CCCCCTTTGAGGCGTACCGGAGTGTTTTTCTGTCGTACTGCTGTAGGCAC
AAGTGCGTGCCGGGCGTGCCTTGCACCAACCAACGTTCCTCTTATGTGTG
TATTCCTGTGGTGTTCTGTCTACGATTTTCTCTCTCGCTTCCTCGTTCTT
TCTTCCCCACCGTGTGCCATGCTCTAGGCTTGGCCTGCCCCCCCCGGCGC
CGTAGTGCTGGCGTGCTCTACTCTCGTCGGAGATGGCGATGGCGATGGCC
GTGGCGGTGGCGGTGGCGGTGGCAGTGGGGGTGACGGTGCGAGCAGCGGG
GGCGGTGGTGGGGGCTACAAGAAGAGGGGGCGTCGTAAGGGCCGCAACAA
GTCGGCAAGCGTGAAGGACGGGCCGCCCACCAAGAGGGCGAGGGGGGGAG
GAGGGGGGGCAGAAGGGGACGGGCGTACTATCGCTGTTGGCCGGGTTTCC
CGGCGTACAACAAAGAAAGAGCTGCGGGAACACTTTGAGGTGCGCAAGTG
TGTAGGTGGACACAACATGCGGTCCCTCACATTCACGTCTTTGTCTTACT
CTTTCGGGATTGCTCTCTTCGTGATCGTTGCTTTTTTGAATCGACCGAAC
TGTTCCGTCTTGCCGTGCCGACAGTTTCCAGGCTTTTGTCATTGACCATG
AGATGAGTTTGTTGTTTTGATGAGGTCTTTTCACTCCGCCCCTCCCTTGT
TATCGTCCTGCTCTCTCTCTCTCCCTCTCTCTTGTCGTAAACATCCTACA
CCAGACCGTCGCCAGCGTGGAGGCCGTAATTCTTCTGATGGGCAAGGGAA
AGCTCCCCCAAGAAGGGTATGTCGCAGCGTTCTACTTTACCACGCATGCT
CATCCGTTGGTCGGATGTTTTCTCTTTGCGCGGTGGAGGTTCTTGATACT
TTCCGCGCAACAACAACAACCACCAGTGGTTTGACAGGCCTTTGACCGTG
TATGGTCCCGTTCTCGTCTTTCTTGACGAAATATCTGGAGGAAGTTGTTT
TGGGGTCAACTTGTTCGGTTGGGAACTGCATTAGATAGCGGCGAAACGAA
ATGATCCGAACACGAAATATTCATGCTCTCTTTGCTGCGTTTGATGTTCG
GACGGTAGATATTGACCAACACTGCCACGAATCCGATACTTCCCTAAGTT
GTGCGAACACTCCTTCACGGCACATCGAACAACCGTAAGCTGGTGTATAT
GTGTTCGAGTTACAAACGTGAGGCGGATACTTACTGATATTACTGCAGTT
TGAGTGTCCGACCCCTCTGCCCTCCCTCCTCGTATTCCTCATGTTGTTGA
AAACCGGAAGGTATGTCACCTTCACGACGCAGGCGGGAGCGTCAAAAGCT
GCCCAATACCTGGACGGGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6028:4997..8167-

>mRNA_Ecto-sp13_S_contig6028.16647.1 ID=mRNA_Ecto-sp13_S_contig6028.16647.1|Name=mRNA_Ecto-sp13_S_contig6028.16647.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6028:4997..8167- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGCACGGTGTTCGTGGCTAACCTGCCGTTCCAGGCATCGCCTTGTCG
AGTGCGACAGGTGATGTCCCGCGTGGGCATCGTCTCGAGCGTTGAGCTCG
AGACAATGACCACGACGGGCATGCACAACGGGCGAGGGGTCGTGGTCTAC
GAGTGCGCAAAAGGGGTGCGGGATGCTCTCCGTGCCTTCAACGACAAGAC
GATGGTGATCGACGCGCGCCTCGTCGCCGTCTCCACTACCAAATGGCCCA
CGGTGGGGCACTTCGCCGGTGAGTTTAATTTTCTGTACACGTTTCAAGTC
GCGCGGGAGCGCGAGAACGCATTAATGGAGCTCAGCCAGTTGGGAGCGTC
CCTCGGTGGGAACCTTGTTCAGGCTTGGCCTGCCCCCCCCGGCGCCGTAG
TGCTGGCGTGCTCTACTCTCGTCGGAGATGGCGATGGCGATGGCCGTGGC
GGTGGCGGTGGCGGTGGCAGTGGGGGTGACGGTGCGAGCAGCGGGGGCGG
TGGTGGGGGCTACAAGAAGAGGGGGCGTCGTAAGGGCCGCAACAAGTCGG
CAAGCGTGAAGGACGGGCCGCCCACCAAGAGGGCGAGGGGGGGAGGAGGG
GGGGCAGAAGGGGACGGGCGTACTATCGCTGTTGGCCGGGTTTCCCGGCG
TACAACAAAGAAAGAGCTGCGGGAACACTTTGAGACCGTCGCCAGCGTGG
AGGCCGTAATTCTTCTGATGGGCAAGGGAAAGCTCCCCCAAGAAGGGTAT
GTCACCTTCACGACGCAGGCGGGAGCGTCAAAAGCTGCCCAATACCTGGA
CGGGTCG
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