mRNA_Ecto-sp13_S_contig60257.16644.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60257.16644.1
Unique NamemRNA_Ecto-sp13_S_contig60257.16644.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: D7FX60_ECTSI (WD40 repeat-containing protein SMU1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX60_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 2.260e-44
Identity = 82/85 (96.47%), Postives = 83/85 (97.65%), Query Frame = 1 
Query:    4 QVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            +VSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFG K SHPEVARFSPDGQYLASGSV
Sbjct:  153 EVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGTK-SHPEVARFSPDGQYLASGSV 236
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BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A446NF76_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446NF76_TRITD)

HSP 1 Score: 106 bits (264), Expect = 4.700e-27
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPP+RL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:    6 SEVSVVPPARLMALITQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEEAYPTTLSHQIKFGKK-THPECARFSPDGQYLVSCSV 89
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BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A804N302_MAIZE (LisH domain-containing protein n=1 Tax=Zea mays TaxID=4577 RepID=A0A804N302_MAIZE)

HSP 1 Score: 107 bits (268), Expect = 1.700e-26
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPPSRL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  128 SEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEETYPTSLSHQIKFGKK-THPECARFSPDGQYLVSCSV 211
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BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A1D6MS79_MAIZE (Suppressor of mec-8 and unc-52 protein homolog 1 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6MS79_MAIZE)

HSP 1 Score: 107 bits (268), Expect = 1.950e-26
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPPSRL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  155 SEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEETYPTSLSHQIKFGKK-THPECARFSPDGQYLVSCSV 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A453ESF9_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453ESF9_AEGTS)

HSP 1 Score: 106 bits (264), Expect = 2.210e-26
Identity = 58/86 (67.44%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPP+RL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  155 SEVSVVPPARLMALITQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEEAYPTTLSHQIKFGKK-THPECARFSPDGQYLVSCSV 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: K8YWD5_NANGC (WD40 repeat-containing protein SMU1 (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWD5_NANGC)

HSP 1 Score: 110 bits (274), Expect = 2.830e-26
Identity = 55/85 (64.71%), Postives = 71/85 (83.53%), Query Frame = 1 
Query:    4 QVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            +VSVVPPSRLLAL+ QAL++QQ+QG LP+ +++DLFRG AR++ KD  E+PP+K AGQIKFG K +HPE ARFSPDG  L +GS+
Sbjct:  211 EVSVVPPSRLLALLQQALRYQQLQGNLPKDRRYDLFRGSARSAGKDEAERPPKKQAGQIKFGSK-THPECARFSPDGLQLVTGSL 294
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A804N305_MAIZE (WD40 repeat-containing protein SMU1 n=3 Tax=Poaceae TaxID=4479 RepID=A0A804N305_MAIZE)

HSP 1 Score: 107 bits (268), Expect = 6.690e-26
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPPSRL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  155 SEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEETYPTSLSHQIKFGKK-THPECARFSPDGQYLVSCSV 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A7R8XD53_9CRUS (WD40 repeat-containing protein SMU1 n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XD53_9CRUS)

HSP 1 Score: 108 bits (270), Expect = 1.030e-25
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    4 QVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            +VSVVPPSRLLAL+ QALKWQQ QGLLP G   DLFRG A A ++  EEK P +M+ QIKFG K SHPEVARFSPDGQYL +GSV
Sbjct:  223 EVSVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKA-AIREQEEEKCPTQMSRQIKFGTK-SHPEVARFSPDGQYLITGSV 305
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: K3XHY1_SETIT (WD40 repeat-containing protein SMU1 n=1 Tax=Setaria italica TaxID=4555 RepID=K3XHY1_SETIT)

HSP 1 Score: 107 bits (267), Expect = 1.240e-25
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPPSRL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  155 SEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEETYPTTLSHQIKFGKK-THPECARFSPDGQYLVSCSV 238
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Match: A0A1E5WM66_9POAL (Suppressor of mec-8 and unc-52 protein-like protein 1 n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5WM66_9POAL)

HSP 1 Score: 106 bits (265), Expect = 1.260e-25
Identity = 59/86 (68.60%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    1 TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEEKPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV 258
            ++VSVVPPSRL+AL+ QALKWQQ QGLLP G +FDLFRG A A K+D EE  P  ++ QIKFG+K +HPE ARFSPDGQYL S SV
Sbjct:  155 SEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTA-AMKQDEEETYPITLSHQIKFGKK-THPECARFSPDGQYLVSCSV 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60257.16644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX60_ECTSI2.260e-4496.47WD40 repeat-containing protein SMU1 n=2 Tax=Ectoca... [more]
A0A446NF76_TRITD4.700e-2767.44Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A804N302_MAIZE1.700e-2668.60LisH domain-containing protein n=1 Tax=Zea mays Ta... [more]
A0A1D6MS79_MAIZE1.950e-2668.60Suppressor of mec-8 and unc-52 protein homolog 1 n... [more]
A0A453ESF9_AEGTS2.210e-2667.44Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
K8YWD5_NANGC2.830e-2664.71WD40 repeat-containing protein SMU1 (Fragment) n=3... [more]
A0A804N305_MAIZE6.690e-2668.60WD40 repeat-containing protein SMU1 n=3 Tax=Poacea... [more]
A0A7R8XD53_9CRUS1.030e-2571.76WD40 repeat-containing protein SMU1 n=1 Tax=Darwin... [more]
K3XHY1_SETIT1.240e-2568.60WD40 repeat-containing protein SMU1 n=1 Tax=Setari... [more]
A0A1E5WM66_9POAL1.260e-2568.60Suppressor of mec-8 and unc-52 protein-like protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60257contigEcto-sp13_S_contig60257:9..829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score161.0
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D7FX60
Preferred nameSMU1
Model size258
KEGG koko:K13111
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007517,GO:0007528,GO:0007610,GO:0007638,GO:0008150,GO:0008152,GO:0008380,GO:0009605,GO:0009612,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009987,GO:0010467,GO:0010468,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0023052,GO:0030154,GO:0030182,GO:0031323,GO:0031461,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046983,GO:0048024,GO:0048468,GO:0048513,GO:0048644,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050684,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051171,GO:0051252,GO:0060255,GO:0061061,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0072553,GO:0080008,GO:0080090,GO:0090304,GO:0098916,GO:0099172,GO:0099536,GO:0099537,GO:1901360,GO:1902494,GO:1903311,GO:1990234,GO:1990904
Exons2
EggNOG free text desc.regulation of alternative mRNA splicing, via spliceosome
EggNOG OGsKOG0275@1,KOG0275@2759
Cds size258
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463839.191369-CDS-Ecto-sp13_S_contig60257:8..2061681463839.191369-CDS-Ecto-sp13_S_contig60257:8..206Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60257 9..206 +
1681463839.2096362-CDS-Ecto-sp13_S_contig60257:769..8291681463839.2096362-CDS-Ecto-sp13_S_contig60257:769..829Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60257 770..829 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60257.16644.1prot_Ecto-sp13_S_contig60257.16644.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60257 9..829 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60257.16644.1

>prot_Ecto-sp13_S_contig60257.16644.1 ID=prot_Ecto-sp13_S_contig60257.16644.1|Name=mRNA_Ecto-sp13_S_contig60257.16644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
TQVSVVPPSRLLALVNQALKWQQVQGLLPRGQKFDLFRGGARASKKDMEE
KPPRKMAGQIKFGEKGSHPEVARFSPDGQYLASGSV
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mRNA from alignment at Ecto-sp13_S_contig60257:9..829+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60257.16644.1 ID=mRNA_Ecto-sp13_S_contig60257.16644.1|Name=mRNA_Ecto-sp13_S_contig60257.16644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=821bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60257:9..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAGGTGAGCGTTGTCCCGCCGAGTCGTCTCTTGGCGCTGGTGAACCA
GGCCCTGAAGTGGCAGCAGGTGCAGGGCCTGCTGCCCAGGGGCCAGAAGT
TCGACCTCTTCAGGGGCGGCGCCCGCGCGAGCAAGAAGGATATGGAGGAG
AAGCCTCCCAGGAAGATGGCCGGCCAGATCAAGTTCGGTGAGAAAGGGGT
GTATACCGTTGTCGGAAGACCATTGGCCTCGCATTCCTGTGTGAAGCCGG
GATGGAACACGCCGGGTTTCTGACCGGATACAGGCTCTCATATCACCCAG
CGCGAAGCGCCGTGAGGTATTCGACGAGTCGCATGGAGGGTGCGCGGAAA
TGGTTACGCCTCTCGTGTGGTAGTTGAGTGTGTCGTGCTTTCTCGGTTGT
GCTGCTGGTGTACTGTTGTGATCTGTGGTTTACGCTTTCAGGCACGTCCT
CAAGCCGGGCGTGAGATTTTGTTTGGTACAAACCCATAATCTGTGCTTCG
GTTCGTGTATGTGCGCGTTTGGCGTTGATCGGTGTGGCATCTACAGCTAT
TCTCTGCTTGTGCAAATCGCTCGTCTGCTGTTTGTATTTTGACGTACTTG
AAACTCTTCCAATCTACTCAATCCTCTAACTAGGGTGCTGCGTTTGGCGC
ATTGAGCTTGCACCTGCTTGGATTGGCAGCTCTCTAACGGTCCGTCGCTT
TGCGCCACCCCGTCGGCATCCCCACAAACGGCGGATCGGTATCTATCACG
CAGGCACGAAGAGTCACCCCGAGGTGGCTCGGTTTAGCCCGGACGGGCAG
TACCTGGCTTCCGGCAGCGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60257:9..829+

>mRNA_Ecto-sp13_S_contig60257.16644.1 ID=mRNA_Ecto-sp13_S_contig60257.16644.1|Name=mRNA_Ecto-sp13_S_contig60257.16644.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60257:9..829+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGCAGGTGAGCGTTGTCCCGCCGAGTCGTCTCTTGGCGCTGGTGAACCA
GGCCCTGAAGTGGCAGCAGGTGCAGGGCCTGCTGCCCAGGGGCCAGAAGT
TCGACCTCTTCAGGGGCGGCGCCCGCGCGAGCAAGAAGGATATGGAGGAG
AAGCCTCCCAGGAAGATGGCCGGCCAGATCAAGTTCGGTGAGAAAGGGAG
TCACCCCGAGGTGGCTCGGTTTAGCCCGGACGGGCAGTACCTGGCTTCCG
GCAGCGTT
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