mRNA_Ecto-sp13_S_contig60232.16639.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60232.16639.1
Unique NamemRNA_Ecto-sp13_S_contig60232.16639.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-8
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 90
            R  KVEAKIFELQEAMADRGYSDAEIEEKV
Sbjct:   64 RKRKVEAKIFELQEAMADRGYSDAEIEEKV 93
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BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-8
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 90
            R  KVEAKIFELQEAMADRGYSDAEIEEKV
Sbjct:   95 RKRKVEAKIFELQEAMADRGYSDAEIEEKV 124
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BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: A0A836CB89_9STRA (cwf21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB89_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.760e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 90
            R  KVEAKIFELQEAMA+RGYSDA+IE KV
Sbjct:   67 RRRKVEAKIFELQEAMAERGYSDADIEAKV 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXT9_9PHAE3.440e-893.33cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G1H6_ECTSI3.450e-893.33cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CB89_9STRA2.760e-683.33cwf21 domain-containing protein n=1 Tax=Tribonema ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60232contigEcto-sp13_S_contig60232:403..507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size105
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.7895486-CDS-Ecto-sp13_S_contig60232:402..5071681463838.7895486-CDS-Ecto-sp13_S_contig60232:402..507Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60232 403..507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60232.16639.1prot_Ecto-sp13_S_contig60232.16639.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60232 403..507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60232.16639.1

>prot_Ecto-sp13_S_contig60232.16639.1 ID=prot_Ecto-sp13_S_contig60232.16639.1|Name=mRNA_Ecto-sp13_S_contig60232.16639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
RPAKVEAKIFELQEAMADRGYSDAEIEEKVNTGKL
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mRNA from alignment at Ecto-sp13_S_contig60232:403..507+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60232.16639.1 ID=mRNA_Ecto-sp13_S_contig60232.16639.1|Name=mRNA_Ecto-sp13_S_contig60232.16639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60232:403..507+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCGGCTAAGGTGGAAGCCAAGATCTTCGAGCTGCAGGAAGCGATGGC
CGACCGTGGCTACAGCGACGCCGAGATTGAGGAAAAGGTAAACACAGGGA
AATTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60232:403..507+

>mRNA_Ecto-sp13_S_contig60232.16639.1 ID=mRNA_Ecto-sp13_S_contig60232.16639.1|Name=mRNA_Ecto-sp13_S_contig60232.16639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60232:403..507+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCCGGCTAAGGTGGAAGCCAAGATCTTCGAGCTGCAGGAAGCGATGGC
CGACCGTGGCTACAGCGACGCCGAGATTGAGGAAAAGGTAAACACAGGGA
AATTG
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