prot_Ecto-sp13_S_contig60232.16639.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig60232.16639.1
Unique Nameprot_Ecto-sp13_S_contig60232.16639.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length35
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: A0A6H5KXT9_9PHAE (cwf21 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXT9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.440e-8
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 30
            R  KVEAKIFELQEAMADRGYSDAEIEEKV
Sbjct:   64 RKRKVEAKIFELQEAMADRGYSDAEIEEKV 93
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: D7G1H6_ECTSI (cwf21 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.450e-8
Identity = 28/30 (93.33%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 30
            R  KVEAKIFELQEAMADRGYSDAEIEEKV
Sbjct:   95 RKRKVEAKIFELQEAMADRGYSDAEIEEKV 124
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Match: A0A836CB89_9STRA (cwf21 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB89_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.760e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 0 
Query:    1 RPAKVEAKIFELQEAMADRGYSDAEIEEKV 30
            R  KVEAKIFELQEAMA+RGYSDA+IE KV
Sbjct:   67 RRRKVEAKIFELQEAMAERGYSDADIEAKV 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60232.16639.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KXT9_9PHAE3.440e-893.33cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7G1H6_ECTSI3.450e-893.33cwf21 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CB89_9STRA2.760e-683.33cwf21 domain-containing protein n=1 Tax=Tribonema ... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013170mRNA splicing factor Cwf21 domainPFAMPF08312cwf21coord: 4..31
e-value: 1.3E-6
score: 28.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60232contigEcto-sp13_S_contig60232:403..507 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60232.16639.1mRNA_Ecto-sp13_S_contig60232.16639.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig60232 403..507 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig60232.16639.1 ID=prot_Ecto-sp13_S_contig60232.16639.1|Name=mRNA_Ecto-sp13_S_contig60232.16639.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
RPAKVEAKIFELQEAMADRGYSDAEIEEKVNTGKL
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013170mRNA_splic_Cwf21_dom