mRNA_Ecto-sp13_S_contig6017.16634.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6017.16634.1
Unique NamemRNA_Ecto-sp13_S_contig6017.16634.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6017.16634.1 vs. uniprot
Match: D8LU33_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU33_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.810e-8
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = -1 
Query:  121 SIMRERGLDPQEDAALKQALPAFLRHAAVL 210
            SIMRERGLDPQEDAALKQALPAFLRHA+V+
Sbjct:  261 SIMRERGLDPQEDAALKQALPAFLRHASVV 290
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6017.16634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU33_ECTSI1.810e-893.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6017contigEcto-sp13_S_contig6017:4371..5194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size211
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.49575-CDS-Ecto-sp13_S_contig6017:4370..45011681463838.49575-CDS-Ecto-sp13_S_contig6017:4370..4501Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6017 4371..4501 +
1681463838.5085707-CDS-Ecto-sp13_S_contig6017:5115..51941681463838.5085707-CDS-Ecto-sp13_S_contig6017:5115..5194Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6017 5116..5194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6017.16634.1prot_Ecto-sp13_S_contig6017.16634.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6017 4371..5194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6017.16634.1

>prot_Ecto-sp13_S_contig6017.16634.1 ID=prot_Ecto-sp13_S_contig6017.16634.1|Name=mRNA_Ecto-sp13_S_contig6017.16634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
AIPGPTRGEVQSTWGAVGAAALRPTDGSRGRATDGKQPCRKHCCVSQESR
QCLLQGGIFLRIQAPLPHDG
back to top

mRNA from alignment at Ecto-sp13_S_contig6017:4371..5194+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6017.16634.1 ID=mRNA_Ecto-sp13_S_contig6017.16634.1|Name=mRNA_Ecto-sp13_S_contig6017.16634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=824bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6017:4371..5194+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATACCAGGTCCTACTCGAGGAGAGGTGCAGAGCACATGGGGGGCCGT
GGGAGCGGCGGCATTACGCCCTACGGATGGATCTCGTGGAAGAGCAACAG
ATGGAAAGCAGCCATGCCGAAAGCACTGCTGGTAAGTGTTGGGTCTATCT
TGCAAAGCATAGCATGGACATCTATCGATCAGGACGTGGCAGCACCAACA
GTAATCTCTTGGATGACCAATCAACGCTCTCTGATCCACCCGAACCGTGT
TGGAGCATCAAGATACCAACCTTCTTCGATGTCCAGTACAACGACCTTGG
CGACACTCACAGACACTCATGTTTTTCTATCGTGGGAACACCCCACCACA
CCACCAACGTTCTTCTGATACAATCTAGATGGCACCCACCCAATCAAAGA
CCTTGCCGCGCCCATTTGTGTCTCACTTCTGCTACTCATCACGAACCATC
CAACTCAATCAACGCTATTTTGATCTAGACATCCGGACCTTGGCCACACT
GACACAAACTGCTGTTTGGATACTTGGTGTCAAGAAATAGCTTTACATTT
TTTTAAACGCAGTTTTGAGGCCAGCAGATTCTCATTTCCAAGACTGCTTT
GAGAGCGAAAGAAAAAAAGACACGCATCTCTTGGTACACCATCCGTTGTG
TTTAGTGAGTCAACTTTCTTTCTGGTAATTTGGCAGAGGCCAATCAGCGT
CCCTAGCTTCGCCCACCTGTGCCTTCCCGACCCGCACCACCGAAGCGTGT
CTCAAGAAAGCCGGCAGTGCTTGCTTCAGGGCGGCATCTTCCTGCGGATC
CAGGCCCCTCTCCCTCATGATGGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6017:4371..5194+

>mRNA_Ecto-sp13_S_contig6017.16634.1 ID=mRNA_Ecto-sp13_S_contig6017.16634.1|Name=mRNA_Ecto-sp13_S_contig6017.16634.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6017:4371..5194+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATACCAGGTCCTACTCGAGGAGAGGTGCAGAGCACATGGGGGGCCGT
GGGAGCGGCGGCATTACGCCCTACGGATGGATCTCGTGGAAGAGCAACAG
ATGGAAAGCAGCCATGCCGAAAGCACTGCTGCGTGTCTCAAGAAAGCCGG
CAGTGCTTGCTTCAGGGCGGCATCTTCCTGCGGATCCAGGCCCCTCTCCC
TCATGATGGA
back to top