mRNA_Ecto-sp13_S_contig6014.16629.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6014.16629.1
Unique NamemRNA_Ecto-sp13_S_contig6014.16629.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: F0YCD1_AURAN (DUF667 domain-containing protein n=3 Tax=Ochrophyta TaxID=2696291 RepID=F0YCD1_AURAN)

HSP 1 Score: 372 bits (955), Expect = 6.710e-129
Identity = 181/191 (94.76%), Postives = 188/191 (98.43%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQE 743
            MFRNTFQSGFLS+LYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEI+GTNVST +ITCPADA +TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI K++
Sbjct:    1 MFRNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIMGTNVSTNYITCPADAKRTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKEQ 191
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A0G4GPC9_9ALVE (DUF667 domain-containing protein n=2 Tax=Eukaryota TaxID=2759 RepID=A0A0G4GPC9_9ALVE)

HSP 1 Score: 370 bits (949), Expect = 6.120e-128
Identity = 178/198 (89.90%), Postives = 190/198 (95.96%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQEGQGAQQP 764
            MF+NTFQSGFLSILYS+GSKPLQIWDK+V+NGHIKR+TD DIQSSVLEI+GTNVST FITCPAD  KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKN+RRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCR+RRIYFSDRLYSE+ELPPEFKLFLP+ K + Q AQQP
Sbjct:    1 MFKNTFQSGFLSILYSVGSKPLQIWDKQVQNGHIKRLTDSDIQSSVLEIMGTNVSTNFITCPADPTKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNIRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRVRRIYFSDRLYSEDELPPEFKLFLPVQKTQQQTAQQP 198
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A812SKJ0_SYMMI (Bug22 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812SKJ0_SYMMI)

HSP 1 Score: 369 bits (946), Expect = 1.630e-127
Identity = 183/201 (91.04%), Postives = 191/201 (95.02%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQEGQGAQQPLAA 773
            MFRNT+QSGFLSILYSIGSKPLQIWDKKVRNGHIKR+TD DIQSSVLEI+GTNVSTTFI CPAD  KTLGIKLPFLVMI+KNL+KYFTFEV VLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIT+Q+    QQP +A
Sbjct:    1 MFRNTYQSGFLSILYSIGSKPLQIWDKKVRNGHIKRMTDPDIQSSVLEIMGTNVSTTFIQCPADPKKTLGIKLPFLVMIIKNLRKYFTFEVMVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITQQQ---QQQPASA 198
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A0G4IXT0_PLABS (DUF667 domain-containing protein n=9 Tax=Eukaryota TaxID=2759 RepID=A0A0G4IXT0_PLABS)

HSP 1 Score: 368 bits (944), Expect = 2.080e-127
Identity = 181/190 (95.26%), Postives = 185/190 (97.37%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 740
            MFRNTFQSGFLSILYSIGSKPLQIWDK+VRNGHIKRITDQDIQSSVLEI+GTNVST FITCPA+   TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI KQ
Sbjct:    1 MFRNTFQSGFLSILYSIGSKPLQIWDKEVRNGHIKRITDQDIQSSVLEIMGTNVSTNFITCPANPKNTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKQ 190
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: F4NX01_BATDJ (DUF667 domain-containing protein n=13 Tax=Eukaryota TaxID=2759 RepID=F4NX01_BATDJ)

HSP 1 Score: 367 bits (942), Expect = 4.190e-127
Identity = 179/190 (94.21%), Postives = 184/190 (96.84%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 740
            MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITD DIQSSVLEI+GTNVST +ITCPA   +TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPI KQ
Sbjct:    1 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSSVLEIIGTNVSTNYITCPAQQNRTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPIQKQ 190
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A1R2AXQ3_9CILI (DUF667 domain-containing protein n=11 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AXQ3_9CILI)

HSP 1 Score: 366 bits (940), Expect = 1.040e-126
Identity = 177/190 (93.16%), Postives = 185/190 (97.37%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 740
            MF+NTFQSGFLSILYSIGSKPLQIWDK VRNGHIKRITD DIQSSVLEI+GTNVSTTFITCPAD  +TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKN+RRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQ+HANCR+RRIYFSDRLYSEEELPPEFKLFLP+ KQ
Sbjct:    8 MFKNTFQSGFLSILYSIGSKPLQIWDKSVRNGHIKRITDTDIQSSVLEIMGTNVSTTFITCPADPNQTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNIRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQLHANCRLRRIYFSDRLYSEEELPPEFKLFLPLQKQ 197
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A7S2N5Z6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2N5Z6_9EUKA)

HSP 1 Score: 367 bits (941), Expect = 1.390e-126
Identity = 182/206 (88.35%), Postives = 191/206 (92.72%), Query Frame = 3 
Query:  138 AAALIYRRAGAMFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQEGQGA 755
            AA  + R A AMF+NTFQSGFLSILYSIGSKPLQIW ++V NGH KRITD DIQSSVLEI+ TN+STT++TCPA A  TLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ GQ A
Sbjct:    7 AAPALSRAAAAMFKNTFQSGFLSILYSIGSKPLQIWKEEVNNGHCKRITDNDIQSSVLEIMSTNISTTYVTCPAKAESTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQAGQPA 212
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A1I8Q6M5_STOCA (DUF667 domain-containing protein n=3 Tax=Bilateria TaxID=33213 RepID=A0A1I8Q6M5_STOCA)

HSP 1 Score: 366 bits (939), Expect = 1.710e-126
Identity = 178/189 (94.18%), Postives = 184/189 (97.35%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITK 737
            MF+NTFQSGFLS+LYSIGSKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPAD  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRR+YFSDRLYSE+ELPPEFKLFLPI K
Sbjct:    1 MFKNTFQSGFLSVLYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNVKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQK 189
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BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: CFA20_DROME (Cilia- and flagella-associated protein 20 n=39 Tax=Endopterygota TaxID=33392 RepID=CFA20_DROME)

HSP 1 Score: 365 bits (938), Expect = 2.260e-126
Identity = 177/189 (93.65%), Postives = 184/189 (97.35%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITK 737
            MF+NTFQSGFLSILYSIGSKPLQ+WDKKVRNGHIKRITD DIQS VLEIVGTNVSTTFITCPAD  KTLGIKLPFLVMI+KN+KKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNY+ETLRVQIHANCRIRR+YFSDRLYSE+ELPPEFKLFLPI K
Sbjct:    1 MFKNTFQSGFLSILYSIGSKPLQLWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTFITCPADPKKTLGIKLPFLVMIIKNMKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYVETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLFLPIQK 189
[Close]
BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Match: A0A3M7QT86_BRAPC (Cilia-and flagella-associated 20 n=4 Tax=Eukaryota TaxID=2759 RepID=A0A3M7QT86_BRAPC)

HSP 1 Score: 364 bits (934), Expect = 6.690e-126
Identity = 176/190 (92.63%), Postives = 185/190 (97.37%), Query Frame = 3 
Query:  171 MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIVGTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQ 740
            MF+NTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITD DIQS VLEIVGTNVSTT+ITCPAD  KTLGIKLPFLVMI+KNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLD+GWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRR+YFSDRLYSE+ELPPEFKL+LP+ K+
Sbjct:    1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIVGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAYGTNYIETLRVQIHANCRIRRVYFSDRLYSEDELPPEFKLYLPVQKK 190
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6014.16629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F0YCD1_AURAN6.710e-12994.76DUF667 domain-containing protein n=3 Tax=Ochrophyt... [more]
A0A0G4GPC9_9ALVE6.120e-12889.90DUF667 domain-containing protein n=2 Tax=Eukaryota... [more]
A0A812SKJ0_SYMMI1.630e-12791.04Bug22 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A0G4IXT0_PLABS2.080e-12795.26DUF667 domain-containing protein n=9 Tax=Eukaryota... [more]
F4NX01_BATDJ4.190e-12794.21DUF667 domain-containing protein n=13 Tax=Eukaryot... [more]
A0A1R2AXQ3_9CILI1.040e-12693.16DUF667 domain-containing protein n=11 Tax=Stentor ... [more]
A0A7S2N5Z6_9EUKA1.390e-12688.35Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A1I8Q6M5_STOCA1.710e-12694.18DUF667 domain-containing protein n=3 Tax=Bilateria... [more]
CFA20_DROME2.260e-12693.65Cilia- and flagella-associated protein 20 n=39 Tax... [more]
A0A3M7QT86_BRAPC6.690e-12692.63Cilia-and flagella-associated 20 n=4 Tax=Eukaryota... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6014contigEcto-sp13_S_contig6014:1090..3152 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score408.7
Seed ortholog evalue1.6e-111
Seed eggNOG ortholog2880.D7G852
Preferred nameDUF667
Model size779
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001578,GO:0003006,GO:0003352,GO:0003356,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005815,GO:0005856,GO:0005874,GO:0005875,GO:0005879,GO:0005881,GO:0005929,GO:0005930,GO:0006139,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007291,GO:0007349,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009987,GO:0010467,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0018094,GO:0018193,GO:0018200,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0030030,GO:0030031,GO:0030154,GO:0030317,GO:0031514,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0035082,GO:0036064,GO:0036126,GO:0036211,GO:0040011,GO:0040012,GO:0040017,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0046483,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048520,GO:0048522,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050794,GO:0050795,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051674,GO:0051704,GO:0060259,GO:0060271,GO:0060295,GO:0060296,GO:0060632,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070925,GO:0071704,GO:0071840,GO:0072594,GO:0090304,GO:0097014,GO:0097223,GO:0097540,GO:0097545,GO:0097722,GO:0097729,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901317,GO:1901360,GO:1901564,GO:1902019,GO:1902093,GO:1990716,GO:2000145,GO:2000147,GO:2000155,GO:2000253
Exons3
EggNOG free text desc.regulation of cilium movement involved in cell motility
EggNOG OGsKOG3213@1,KOG3213@2759
Ec32 ortholog descriptionFlagellar Associated Protein
Ec32 orthologEc-12_001470.1
Cds size609
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.1769662-CDS-Ecto-sp13_S_contig6014:1089..13171681463838.1769662-CDS-Ecto-sp13_S_contig6014:1089..1317Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6014 1090..1317 -
1681463838.1879656-CDS-Ecto-sp13_S_contig6014:1835..21631681463838.1879656-CDS-Ecto-sp13_S_contig6014:1835..2163Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6014 1836..2163 -
1681463838.1971376-CDS-Ecto-sp13_S_contig6014:2929..29821681463838.1971376-CDS-Ecto-sp13_S_contig6014:2929..2982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6014 2930..2982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.2063546-UTR-Ecto-sp13_S_contig6014:2982..31521681463838.2063546-UTR-Ecto-sp13_S_contig6014:2982..3152Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6014 2983..3152 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6014.16629.1prot_Ecto-sp13_S_contig6014.16629.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6014 1090..2982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6014.16629.1

>prot_Ecto-sp13_S_contig6014.16629.1 ID=prot_Ecto-sp13_S_contig6014.16629.1|Name=mRNA_Ecto-sp13_S_contig6014.16629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
MFRNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDQDIQSSVLEIV
GTNVSTTFITCPADAGKTLGIKLPFLVMILKNLKKYFTFEVQVLDDKNVR
RRFRASNYQSTTRVKPFICTMPMRLDEGWNQIQFNLSDFTRRAYGTNYIE
TLRVQIHANCRIRRIYFSDRLYSEEELPPEFKLFLPITKQEGQGAQQPLA
AT*
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mRNA from alignment at Ecto-sp13_S_contig6014:1090..3152-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6014.16629.1 ID=mRNA_Ecto-sp13_S_contig6014.16629.1|Name=mRNA_Ecto-sp13_S_contig6014.16629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2063bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6014:1090..3152- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATAGGGTCACAGGAGCTCTGCCACAAATCGGAGGTACCTGATACTTT
TCGTGTGTTATACGGAAGAAGGATAGGCGGCGCAATAGAACCACCAGGGA
AAGCAGTGCTCCGACTGCTGTTGCTGGGAAGGGTGGCGCGGCGGCGCTCA
TCTACCGGCGGGCTGGAGCCATGTTCCGGAATACTTTCCAGTCGGGCTTC
CTGTCTATCTTGTACAGTATAGGGTGAGTGGGTGTGATCTTCGCATTATA
TGCCCAAGTGTGAAAATGGTTGTTCAAGCACCGCCGCCTCTCTGTTGTCG
GCGACTGCTGGGGTGAGCGGTCCTTTTGCGCCAGCTTCTACGACTTTTGC
TCGGAAGCTCTTCCTTGTTGAACTAGAACCTCTTTACTAGCCACCCACTG
TTGCTGGTTAGATGGGCGACGCTGACCGTCCGGTTATTTTCCCAGCACGG
CAACTCTACTGAATGAATCACACTTAATGGTATGCCCAACAAGCATCAAA
TGCGTCTACGCAGCGGTCTCGTAACGGTGACCCAAACATCATCTGAACGT
AGTGGACTACGTTTCAGGACTCGATAAACTCTCCAACCATACTCGACCTC
GGTTGAACGATTGTCCAAGGTGTTTGGGTGTTGAACCGGGAGCGCGGTAA
GTTGTGACGTGTTGACCTGCCGCCACTACACTTCGTTTGTGATCTTGTGC
TGCTGCGGCCGTAAGAGAGAGAGTCCGGGTGTTGGCACTCAGCATGTGAA
ACGGCTTTCTAAGCAGTTTACACACCAGCAGCGGAGAAAACGAGGCCTTC
GATTCCTTCGCCAGTGCACCCACCCCTTGAATGAATGCTGCTGTGGAATA
GTGCCCGTCTCTCTGTGTTCCCGCCACTCCCTTCTGCCACCGCCATTACC
ACCGTGTCTTGAGTGCTCGTTGCTGTGGGCCCCACGCCTCACACTGCTGC
CTACTCCCCCCGCCCTCCCGCCATGACACCACAAAACAGGTCAAAACCGT
TGCAAATATGGGACAAGAAGGTGCGCAATGGGCACATCAAGCGCATCACG
GATCAGGACATCCAGTCGTCCGTCCTCGAGATCGTGGGCACGAACGTGTC
GACGACCTTCATCACCTGCCCCGCCGACGCGGGCAAGACCCTCGGGATCA
AGCTCCCCTTCCTGGTGATGATCCTCAAGAACCTCAAGAAGTACTTCACG
TTCGAGGTGCAGGTGCTCGACGACAAGAACGTGCGCAGGAGATTCCGCGC
CTCCAACTATCAGAGCACGACGCGCGTCAAGCCCTTCATCTGCACGATGC
CGATGCGGTTGGATGAGGTGAGCAGCCGAAAAGAAGAGAGTGCTCTCACT
GCGTCCCTTCCCGCTCGCCTCCCCTTCTCTGTCCCCGCCCCTTTTCCCTC
CAAAATGAGGGGAACAGAAGCGTGGGCGAATTTCGTTAACAGTAAATGAA
AAGGGCACGATCGCTATCATACCGCCTGGGAACAGTGGTCGTTACAGGCA
GCGAGGAAGGAGACTTAGGGTTCGCACACGAAATTTTGTGTCAAACAGAG
GCGAAATATAGATATCAGCCCTGCCGTGAGTGGTAAAGTGCCAAGCGACG
TGAGGCAAGCAACAAATAAGTATTCGTCCTCCCTCCCCTCTCAAGCTCTC
GCTTGCACGCACAACGTACCCTCAAAACCCTCGAACCACACCTCCTCTCA
ACTCCTTCGCCATGACACCATCCACCCTCCTCGTTTGCGTTTACAGTAAT
ACTGAGATACAGAAGCTTGGTTGTTTCGTTGTTGCTGCTGATGAACGGAC
TTGAAATCCTTGACCCTGTCCTTCTCGCCGGCCAGGGGTGGAACCAGATC
CAGTTCAACCTTAGCGACTTCACGCGCCGAGCGTATGGCACGAATTACAT
CGAGACCCTGCGGGTGCAGATCCACGCGAACTGCCGCATCCGCAGGATTT
ACTTCTCCGACCGCCTGTACTCGGAGGAGGAACTTCCGCCGGAGTTCAAG
CTTTTCCTACCCATCACCAAGCAGGAGGGACAGGGGGCGCAGCAGCCGCT
CGCGGCAACGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6014:1090..3152-

>mRNA_Ecto-sp13_S_contig6014.16629.1 ID=mRNA_Ecto-sp13_S_contig6014.16629.1|Name=mRNA_Ecto-sp13_S_contig6014.16629.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6014:1090..3152- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCGGAATACTTTCCAGTCGGGCTTCCTGTCTATCTTGTACAGTAT
AGGGTCAAAACCGTTGCAAATATGGGACAAGAAGGTGCGCAATGGGCACA
TCAAGCGCATCACGGATCAGGACATCCAGTCGTCCGTCCTCGAGATCGTG
GGCACGAACGTGTCGACGACCTTCATCACCTGCCCCGCCGACGCGGGCAA
GACCCTCGGGATCAAGCTCCCCTTCCTGGTGATGATCCTCAAGAACCTCA
AGAAGTACTTCACGTTCGAGGTGCAGGTGCTCGACGACAAGAACGTGCGC
AGGAGATTCCGCGCCTCCAACTATCAGAGCACGACGCGCGTCAAGCCCTT
CATCTGCACGATGCCGATGCGGTTGGATGAGGGGTGGAACCAGATCCAGT
TCAACCTTAGCGACTTCACGCGCCGAGCGTATGGCACGAATTACATCGAG
ACCCTGCGGGTGCAGATCCACGCGAACTGCCGCATCCGCAGGATTTACTT
CTCCGACCGCCTGTACTCGGAGGAGGAACTTCCGCCGGAGTTCAAGCTTT
TCCTACCCATCACCAAGCAGGAGGGACAGGGGGCGCAGCAGCCGCTCGCG
GCAACGTGA
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