mRNA_Ecto-sp13_S_contig60137.16627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60137.16627.1
Unique NamemRNA_Ecto-sp13_S_contig60137.16627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60137.16627.1 vs. uniprot
Match: D7FZJ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ9_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 3.360e-66
Identity = 183/257 (71.21%), Postives = 193/257 (75.10%), Query Frame = 1 
Query:    1 ATAALRTERTSAGRTFPHDGGKQEGRVETSDGGAFSAPSSSDDKEGRAVSPRGTTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG-AGTGPVAKNPPRESLRQEKHRQRQQHQDYSSSRENDFKALDSPKTAAVTSADSAPASKGPSKSRSNSWPSEADEA-AASTGGTVAGNDGKHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRGYRAGLETMVVESTEPAEAGEGRRIHYQ 765
            ATAA+RTERTSAGR+FP DGG+QEGR ETSD  AFSAPSSSD+KEG AVSPR     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  AG GPVAKNP RESLR+EKH QRQQHQDY SSREN+FK LDSP+TAAVTSADSAP+SKGP KSRSNS PSEAD+A AAST GTV GNDGK K                                      ERRGYRAGLETM   STEPAEAGEGR+IHYQ
Sbjct:   29 ATAAVRTERTSAGRSFPRDGGEQEGRAETSDDRAFSAPSSSDEKEGXAVSPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGPVAKNPLRESLRREKHHQRQQHQDYKSSRENEFKVLDSPQTAAVTSADSAPSSKGPRKSRSNSLPSEADDAVAASTAGTVGGNDGKRKRQCQESQPPRSPLPAPLSSARVGGGGD-----------ERRGYRAGLETMAAGSTEPAEAGEGRQIHYQ 274
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60137.16627.1 vs. uniprot
Match: A0A6H5JNY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY4_9PHAE)

HSP 1 Score: 216 bits (551), Expect = 2.710e-65
Identity = 165/255 (64.71%), Postives = 175/255 (68.63%), Query Frame = 1 
Query:    1 ATAALRTERTSAGRTFPHDGGKQEGRVETSDGGAFSAPSSSDDKEGRAVSPRGTTAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGTGPVAKNPPRESLRQEKHRQRQQHQDYSSSRENDFKALDSPKTAAVTSADSAPASKGPSKSRSNSWPSEADEAAASTGGTVAGNDGKHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERRGYRAGLETMVVESTEPAEAGEGRRIHYQ 765
            ATA +RTERTSAGRTFP  GG+QEGR ETSD GAF A  SSD+K+G AVSPR  TAP                             XXX     GAG  PV KNP RE  R EKH QRQQH DY+SSREN+FKALDS +TAAVTSA+SAP+S GP KSRSNS PSEAD  AAST GTVAGNDGKHK          XXXXXXXXXXXXXXXXXXXXX       ERRGYRAGLETM VESTEP EAGEGR+IHYQ
Sbjct:   58 ATATVRTERTSAGRTFPRGGGEQEGRAETSDDGAFPASPSSDEKKGGAVSPRSITAPPVVTAFFPAVRPRRQCSSLRSDAVAAADEXXXSTAAAGAGAPPVTKNPLRERPRWEKHHQRQQHPDYNSSRENEFKALDSAQTAAVTSANSAPSSIGPGKSRSNSLPSEADAVAASTAGTVAGNDGKHKRRRESQLPSSXXXXXXXXXXXXXXXXXXXXX-------ERRGYRAGLETMAVESTEPTEAGEGRQIHYQ 305
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60137.16627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZJ9_ECTSI3.360e-6671.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNY4_9PHAE2.710e-6564.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60137contigEcto-sp13_S_contig60137:4..768 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size765
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010200.1
Cds size765
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.1056213-CDS-Ecto-sp13_S_contig60137:3..7681681463838.1056213-CDS-Ecto-sp13_S_contig60137:3..768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60137 4..768 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60137.16627.1prot_Ecto-sp13_S_contig60137.16627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60137 4..768 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60137.16627.1

>prot_Ecto-sp13_S_contig60137.16627.1 ID=prot_Ecto-sp13_S_contig60137.16627.1|Name=mRNA_Ecto-sp13_S_contig60137.16627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=255bp
ATAALRTERTSAGRTFPHDGGKQEGRVETSDGGAFSAPSSSDDKEGRAVS
PRGTTAPPVVTASSPAVQPRRQDSSLRSDAAAAAADDDGSAAAAGAGTGP
VAKNPPRESLRQEKHRQRQQHQDYSSSRENDFKALDSPKTAAVTSADSAP
ASKGPSKSRSNSWPSEADEAAASTGGTVAGNDGKHKRRHESQLPPSSLFS
PPPSARGGGGGGGSGGGGGGGGGDERRGYRAGLETMVVESTEPAEAGEGR
RIHYQ
back to top

mRNA from alignment at Ecto-sp13_S_contig60137:4..768+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60137.16627.1 ID=mRNA_Ecto-sp13_S_contig60137.16627.1|Name=mRNA_Ecto-sp13_S_contig60137.16627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60137:4..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGGCCGCCTTACGCACGGAAAGGACTTCGGCCGGCCGGACGTTCCC
CCACGACGGCGGGAAGCAAGAGGGACGGGTCGAGACATCCGACGGAGGAG
CTTTCTCGGCGCCCTCCAGTAGTGACGACAAGGAGGGGAGGGCGGTCTCG
CCGCGGGGTACCACCGCGCCCCCTGTCGTGACGGCATCGTCCCCGGCCGT
GCAGCCCAGGAGGCAGGATTCTTCCCTCCGATCCGATGCTGCTGCTGCTG
CTGCTGATGATGATGGTTCTGCTGCCGCCGCCGGCGCTGGTACAGGACCA
GTGGCGAAGAATCCTCCTCGAGAGAGTCTGCGGCAGGAAAAACACCGCCA
ACGGCAGCAACACCAAGACTACAGCTCGTCCAGGGAGAACGACTTCAAGG
CCCTGGACTCTCCCAAGACCGCTGCCGTGACGAGCGCTGATTCCGCACCC
GCTTCCAAAGGGCCGAGCAAGTCCCGCAGCAACTCCTGGCCGTCAGAAGC
TGATGAGGCAGCAGCGTCCACGGGTGGAACGGTCGCCGGTAACGACGGCA
AACACAAGCGCCGGCACGAAAGTCAACTCCCCCCATCTTCTTTATTCTCA
CCTCCTCCTTCAGCTCGTGGCGGAGGCGGAGGCGGCGGCAGCGGCGGCGG
TGGCGGCGGCGGAGGCGGCGATGAAAGAAGAGGCTACAGAGCTGGGCTAG
AGACGATGGTTGTGGAGAGCACCGAGCCAGCGGAAGCGGGGGAGGGTCGT
CGAATCCACTATCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60137:4..768+

>mRNA_Ecto-sp13_S_contig60137.16627.1 ID=mRNA_Ecto-sp13_S_contig60137.16627.1|Name=mRNA_Ecto-sp13_S_contig60137.16627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=765bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60137:4..768+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCACGGCCGCCTTACGCACGGAAAGGACTTCGGCCGGCCGGACGTTCCC
CCACGACGGCGGGAAGCAAGAGGGACGGGTCGAGACATCCGACGGAGGAG
CTTTCTCGGCGCCCTCCAGTAGTGACGACAAGGAGGGGAGGGCGGTCTCG
CCGCGGGGTACCACCGCGCCCCCTGTCGTGACGGCATCGTCCCCGGCCGT
GCAGCCCAGGAGGCAGGATTCTTCCCTCCGATCCGATGCTGCTGCTGCTG
CTGCTGATGATGATGGTTCTGCTGCCGCCGCCGGCGCTGGTACAGGACCA
GTGGCGAAGAATCCTCCTCGAGAGAGTCTGCGGCAGGAAAAACACCGCCA
ACGGCAGCAACACCAAGACTACAGCTCGTCCAGGGAGAACGACTTCAAGG
CCCTGGACTCTCCCAAGACCGCTGCCGTGACGAGCGCTGATTCCGCACCC
GCTTCCAAAGGGCCGAGCAAGTCCCGCAGCAACTCCTGGCCGTCAGAAGC
TGATGAGGCAGCAGCGTCCACGGGTGGAACGGTCGCCGGTAACGACGGCA
AACACAAGCGCCGGCACGAAAGTCAACTCCCCCCATCTTCTTTATTCTCA
CCTCCTCCTTCAGCTCGTGGCGGAGGCGGAGGCGGCGGCAGCGGCGGCGG
TGGCGGCGGCGGAGGCGGCGATGAAAGAAGAGGCTACAGAGCTGGGCTAG
AGACGATGGTTGTGGAGAGCACCGAGCCAGCGGAAGCGGGGGAGGGTCGT
CGAATCCACTATCAG
back to top