mRNA_Ecto-sp13_S_contig60114.16625.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60114.16625.1
Unique NamemRNA_Ecto-sp13_S_contig60114.16625.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: D7FWS7_ECTSI (Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWS7_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 7.570e-22
Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG 141
            +AAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG
Sbjct:  274 EAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG 320
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A835ZDK9_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDK9_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.400e-12
Identity = 33/43 (76.74%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYW 129
            +AAEALGAIGG EAE LL  F  DD V VKESCEVAL+TIDYW
Sbjct:  261 EAAEALGAIGGAEAEALLAAFAGDDAVVVKESCEVALNTIDYW 303
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A6U4JUI0_9STRA (Deoxyhypusine hydroxylase n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JUI0_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 6.980e-10
Identity = 29/45 (64.44%), Postives = 35/45 (77.78%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSN 135
            +AAEALGAIGG   E +L  ++ DD   VK+SCEVALD+IDYWSN
Sbjct:  275 EAAEALGAIGGVSVEDVLEKYVGDDETMVKQSCEVALDSIDYWSN 319
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A662XJ50_9STRA (Deoxyhypusine hydroxylase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XJ50_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.250e-9
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWS 132
            +AAEALGAIG +E E LLR ++ DDV  V+ESCEVALD +DYW+
Sbjct:  264 EAAEALGAIGTHECEVLLREYLKDDVQVVRESCEVALDIMDYWA 307
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: D0NC43_PHYIT (Deoxyhypusine hydroxylase n=19 Tax=Phytophthora TaxID=4783 RepID=D0NC43_PHYIT)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWS 132
            +AAEALGAIG  E E +L+ ++ DDV  V+ESCEVALD +DYW+
Sbjct:  264 EAAEALGAIGSTECEKILKQYLKDDVQVVRESCEVALDIMDYWA 307
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: W2KI06_PHYPR (Deoxyhypusine hydroxylase n=2 Tax=Phytophthora TaxID=4783 RepID=W2KI06_PHYPR)

HSP 1 Score: 59.7 bits (143), Expect = 3.260e-9
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWS 132
            +AAEALGAIG  E E +L+ ++ DDV  V+ESCEVALD +DYW+
Sbjct:  264 EAAEALGAIGSTECEEILKQYLKDDVQVVRESCEVALDIMDYWA 307
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A7S4DDJ9_HETAK (Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDJ9_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 3.330e-9
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG 141
            +AAEALGAIGG  A+ +L+ ++ D    VKESCEVALDT+DYW+  G
Sbjct:  259 EAAEALGAIGGARAQRVLQEYLDDQEGCVKESCEVALDTMDYWAKHG 305
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: H3GH76_PHYRM (Deoxyhypusine hydroxylase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GH76_PHYRM)

HSP 1 Score: 59.3 bits (142), Expect = 4.520e-9
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWS 132
            +AAEALGAIG  E E +L+ ++ DDV  V+ESCEVALD +DYW+
Sbjct:  266 EAAEALGAIGTTECEDILKQYLKDDVQVVRESCEVALDIMDYWA 309
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A7S2V0Z7_9STRA (Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0Z7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.360e-9
Identity = 29/47 (61.70%), Postives = 34/47 (72.34%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG 141
            +AAEALGAIGG + E +L+ F  D    VKESCEVALDTI+YW   G
Sbjct:  262 EAAEALGAIGGADTEQVLKEFFDDKEEVVKESCEVALDTINYWKPEG 308
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BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Match: A0A484DX84_BRELC (Deoxyhypusine hydroxylase n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DX84_BRELC)

HSP 1 Score: 57.0 bits (136), Expect = 2.970e-8
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWS 132
            +AAEALGAIG  E E +LR ++ D+ + V+ESC+VALD +DYW+
Sbjct:  252 EAAEALGAIGTRECEDILRMYLKDEALVVRESCKVALDIMDYWA 295
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60114.16625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWS7_ECTSI7.570e-2297.87Deoxyhypusine hydroxylase n=2 Tax=Ectocarpus TaxID... [more]
A0A835ZDK9_9STRA7.400e-1276.74Deoxyhypusine hydroxylase n=1 Tax=Tribonema minus ... [more]
A0A6U4JUI0_9STRA6.980e-1064.44Deoxyhypusine hydroxylase n=2 Tax=Phaeomonas parva... [more]
A0A662XJ50_9STRA1.250e-965.91Deoxyhypusine hydroxylase n=2 Tax=Nothophytophthor... [more]
D0NC43_PHYIT3.260e-961.36Deoxyhypusine hydroxylase n=19 Tax=Phytophthora Ta... [more]
W2KI06_PHYPR3.260e-961.36Deoxyhypusine hydroxylase n=2 Tax=Phytophthora Tax... [more]
A0A7S4DDJ9_HETAK3.330e-959.57Deoxyhypusine monooxygenase (Fragment) n=1 Tax=Het... [more]
H3GH76_PHYRM4.520e-961.36Deoxyhypusine hydroxylase n=1 Tax=Phytophthora ram... [more]
A0A7S2V0Z7_9STRA6.360e-961.70Deoxyhypusine hydroxylase n=1 Tax=Fibrocapsa japon... [more]
A0A484DX84_BRELC2.970e-856.82Deoxyhypusine hydroxylase n=1 Tax=Bremia lactucae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60114contigEcto-sp13_S_contig60114:569..712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score94.4
Seed ortholog evalue1.6e-17
Seed eggNOG ortholog2880.D7FWS7
Preferred nameLIA1
Model size144
KEGG rclassRC00003,RC00060
KEGG koko:K06072,ko:K08187,ko:K16369
KEGG TC2.A.1.13
KEGG ReactionR02056
KEGG Pathwayko00564,ko01100,ko01110,ko04919,ko04974,map00564,map01100,map01110,map04919,map04974
KEGG ModuleM00091
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0003674,GO:0003824,GO:0004497,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006417,GO:0006464,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0008150,GO:0008152,GO:0008283,GO:0008612,GO:0009058,GO:0009268,GO:0009628,GO:0009889,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010608,GO:0012505,GO:0016020,GO:0016043,GO:0016491,GO:0016705,GO:0018193,GO:0018205,GO:0019135,GO:0019222,GO:0019538,GO:0030447,GO:0031323,GO:0031325,GO:0031326,GO:0031329,GO:0031331,GO:0031984,GO:0032268,GO:0034248,GO:0036176,GO:0036177,GO:0036178,GO:0036211,GO:0040007,GO:0042175,GO:0042710,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044010,GO:0044011,GO:0044182,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0046872,GO:0046914,GO:0048037,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051604,GO:0051703,GO:0051704,GO:0055114,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090605,GO:0090609,GO:0098827,GO:1901564,GO:2000112,GO:2000765
Exons1
EggNOG free text desc.deoxyhypusine monooxygenase activity
EggNOG OGsCOG1413@1,KOG0567@2759
EC1.14.99.29,2.1.1.17
Cds size144
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463838.0355434-CDS-Ecto-sp13_S_contig60114:568..7121681463838.0355434-CDS-Ecto-sp13_S_contig60114:568..712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60114 569..712 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60114.16625.1prot_Ecto-sp13_S_contig60114.16625.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60114 569..712 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60114.16625.1

>prot_Ecto-sp13_S_contig60114.16625.1 ID=prot_Ecto-sp13_S_contig60114.16625.1|Name=mRNA_Ecto-sp13_S_contig60114.16625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
QAAEALGAIGGNEAEGLLRTFMADDVVAVKESCEVALDTIDYWSNRG*
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mRNA from alignment at Ecto-sp13_S_contig60114:569..712+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60114.16625.1 ID=mRNA_Ecto-sp13_S_contig60114.16625.1|Name=mRNA_Ecto-sp13_S_contig60114.16625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60114:569..712+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGCGGAAGCTCTCGGAGCGATCGGGGGTAACGAGGCGGAAGGGCT
GCTCAGAACCTTCATGGCGGACGACGTGGTCGCGGTCAAGGAGAGCTGCG
AGGTCGCGCTGGACACAATCGACTACTGGTCCAACCGAGGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60114:569..712+

>mRNA_Ecto-sp13_S_contig60114.16625.1 ID=mRNA_Ecto-sp13_S_contig60114.16625.1|Name=mRNA_Ecto-sp13_S_contig60114.16625.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60114:569..712+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGGCGGAAGCTCTCGGAGCGATCGGGGGTAACGAGGCGGAAGGGCT
GCTCAGAACCTTCATGGCGGACGACGTGGTCGCGGTCAAGGAGAGCTGCG
AGGTCGCGCTGGACACAATCGACTACTGGTCCAACCGAGGTTGA
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