mRNA_Ecto-sp13_S_contig60075.16612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60075.16612.1
Unique NamemRNA_Ecto-sp13_S_contig60075.16612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A6H5JSG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSG9_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.210e-35
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1
Query:    1 VRVLGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGLDATEGSDNTWSYW 189
            VR LGSPAVDFTLHDLDGNRWNL EVLAAGAGKPVV+IFGMWTCPAFQGLDA EGS NTW+YW
Sbjct:   62 VRDLGSPAVDFTLHDLDGNRWNLGEVLAAGAGKPVVMIFGMWTCPAFQGLDAAEGSGNTWAYW 124          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: D8LC80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC80_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.960e-34
Identity = 56/63 (88.89%), Postives = 57/63 (90.48%), Query Frame = 1
Query:    1 VRVLGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGLDATEGSDNTWSYW 189
            VR LGSPAVDFTLHDLDGNRWNL EVLAAG GKPVVLIFGMWTCPA+QGLD  EGS NTWSYW
Sbjct:   37 VRDLGSPAVDFTLHDLDGNRWNLGEVLAAGEGKPVVLIFGMWTCPAYQGLDVIEGSGNTWSYW 99          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A6H5KKN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.870e-11
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1
Query:   10 LGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQG 147
            +G  AVDFTLHDL G RWNL E L    G PVV+++GM+TCPAFQG
Sbjct:  198 VGEDAVDFTLHDLKGRRWNLGETLER-TGLPVVMVWGMFTCPAFQG 242          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A7S2RV85_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RV85_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-10
Identity = 33/64 (51.56%), Postives = 38/64 (59.38%), Query Frame = 1
Query:    4 RVLGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGL--DATEGSDNTWSYW 189
            R  G  AVDFTL+DL GN   L  +L     KPV LI+GMWTCPAFQGL  D     ++ W  W
Sbjct:   65 RAAGDSAVDFTLYDLAGNEVTLSTLLE---DKPVALIWGMWTCPAFQGLRSDYPFDQNSRWEEW 125          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: D8LCJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ3_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 1.650e-10
Identity = 28/46 (60.87%), Postives = 34/46 (73.91%), Query Frame = 1
Query:   10 LGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQG 147
            +G  AVDFTLHDL+G RWNL E L    G PVV+++GM+ CP FQG
Sbjct:  168 VGEDAVDFTLHDLEGRRWNLGETLER-TGLPVVMVWGMFICPGFQG 212          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A835Z1L4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.970e-10
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   13 GSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGLDATEGSDNTWSYW 189
            G+ A+DFTL+DLDG  W L E LA+   +PV LI+GM TCPAF+GL      D   +YW
Sbjct:   44 GAAAIDFTLYDLDGAAWTLSEHLAS---QPVCLIWGMHTCPAFEGLGTASPFDEC-AYW 98          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A6H5L0M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 3.260e-9
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:   13 GSPAVDFTLHDLD-GNRWNLDEVL---AAGAGKPVVLIFGMWTCPAFQGL 150
            GS A+DFT HD   G  WNL E L      AGKPVVLI+GM+TCPAFQG+
Sbjct:   70 GSGAIDFTSHDYPAGEPWNLREHLEGVGGDAGKPVVLIWGMFTCPAFQGM 119          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A7S2G552_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G552_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.600e-5
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    4 RVLGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCP 135
            R  G PAVDFT+  +DG   NL  +L+    KPVV+IFGM+TCP
Sbjct:   71 RRTGDPAVDFTMKTIDGEVVNLKALLST---KPVVMIFGMYTCP 111          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: A0A7S2C362_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C362_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 2.420e-5
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   13 GSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGLDATEGSDNTWS 183
            G  A+DF L  LD N + L +++     KPVV+++GM TCPAFQGL   +  ++ +S
Sbjct:   91 GGFAIDFALPSLDDNVYYLRDLIRT---KPVVMVYGMLTCPAFQGLYLEDHKESHFS 144          
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Match: UPI0015E7AF41 (redoxin domain-containing protein n=1 Tax=Pseudomonas sp. Q2-TVG4-2 TaxID=1685699 RepID=UPI0015E7AF41)

HSP 1 Score: 48.9 bits (115), Expect = 4.300e-5
Identity = 23/45 (51.11%), Postives = 28/45 (62.22%), Query Frame = 1
Query:   13 GSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQG 147
            G  A DFT+ D+DG  W L+E+     G+PVVLIFG  TCP   G
Sbjct:   45 GDLAPDFTVQDIDGKTWRLNEL----RGQPVVLIFGSGTCPMTTG 85          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60075.16612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JSG9_9PHAE2.210e-3590.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC80_ECTSI1.960e-3488.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKN7_9PHAE1.870e-1165.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RV85_9STRA1.230e-1051.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D8LCJ3_ECTSI1.650e-1060.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z1L4_9STRA1.970e-1052.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5L0M4_9PHAE3.260e-962.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G552_9STRA1.600e-554.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2C362_9STRA2.420e-542.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
UPI0015E7AF414.300e-551.11redoxin domain-containing protein n=1 Tax=Pseudomo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60075contigEcto-sp13_S_contig60075:475..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-20_004760.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.7355344-CDS-Ecto-sp13_S_contig60075:474..6631681463836.7355344-CDS-Ecto-sp13_S_contig60075:474..663Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60075 475..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60075.16612.1prot_Ecto-sp13_S_contig60075.16612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60075 475..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60075.16612.1

>prot_Ecto-sp13_S_contig60075.16612.1 ID=prot_Ecto-sp13_S_contig60075.16612.1|Name=mRNA_Ecto-sp13_S_contig60075.16612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
VRVLGSPAVDFTLHDLDGNRWNLDEVLAAGAGKPVVLIFGMWTCPAFQGL
DATEGSDNTWSYW
back to top

mRNA from alignment at Ecto-sp13_S_contig60075:475..663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60075.16612.1 ID=mRNA_Ecto-sp13_S_contig60075.16612.1|Name=mRNA_Ecto-sp13_S_contig60075.16612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60075:475..663+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGTGTCCTCGGGTCGCCGGCGGTGGACTTCACGTTGCATGACCTGGA TGGTAACCGATGGAATCTTGACGAGGTGTTGGCAGCAGGAGCCGGGAAGC CGGTAGTCCTGATTTTTGGCATGTGGACATGCCCAGCGTTCCAGGGACTT GACGCCACCGAGGGATCAGACAACACATGGTCCTATTGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60075:475..663+

>mRNA_Ecto-sp13_S_contig60075.16612.1 ID=mRNA_Ecto-sp13_S_contig60075.16612.1|Name=mRNA_Ecto-sp13_S_contig60075.16612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60075:475..663+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCCGTGTCCTCGGGTCGCCGGCGGTGGACTTCACGTTGCATGACCTGGA
TGGTAACCGATGGAATCTTGACGAGGTGTTGGCAGCAGGAGCCGGGAAGC
CGGTAGTCCTGATTTTTGGCATGTGGACATGCCCAGCGTTCCAGGGACTT
GACGCCACCGAGGGATCAGACAACACATGGTCCTATTGG
back to top