mRNA_Ecto-sp13_S_contig6007.16609.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6007.16609.1
Unique NamemRNA_Ecto-sp13_S_contig6007.16609.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: D7FZ09_ECTSI (Pellino homolog 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ09_ECTSI)

HSP 1 Score: 580 bits (1494), Expect = 8.800e-197
Identity = 292/312 (93.59%), Postives = 298/312 (95.51%), Query Frame = 1 
Query: 1600 MASPTRNTRTKEALVKHADGNEHDDDDGGVRSTKNVPRGRCGKQVAFKTPEARPTESCGRRNPPHRARGGEGGIGGTNTRLPRNCGVSSGAGDGDGQNRGGRSFFLKSAQGESQNHAAGYRLQLSLSAQQREAAERAVRGRVSTTQAPAETLGGAEDVVDVPCQADDGCDMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV 2535
            MASP+RN RTKE LVK AD NEHDD+ G VRSTKNVPRGRC KQV FKTPEARPTESCG RNPPHRARGGEGGIGGTN RLPRNCGVSSGAGDGDGQNRGGRSF LKSAQGESQ+HAAGYRLQLSLSAQQREAAERA RGR STTQAPAETLGGAEDVVDVPCQADDGCDMFQLGRMQSA NDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNEL+SGT+IDIGGVQ+
Sbjct:    1 MASPSRNIRTKETLVKPADRNEHDDEGGSVRSTKNVPRGRCEKQVTFKTPEARPTESCGGRNPPHRARGGEGGIGGTNARLPRNCGVSSGAGDGDGQNRGGRSFLLKSAQGESQSHAAGYRLQLSLSAQQREAAERAGRGRASTTQAPAETLGGAEDVVDVPCQADDGCDMFQLGRMQSAENDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELTSGTIIDIGGVQM 312
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A6H5L190_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L190_9PHAE)

HSP 1 Score: 489 bits (1259), Expect = 1.530e-163
Identity = 245/283 (86.57%), Postives = 255/283 (90.11%), Query Frame = 1 
Query: 1600 MASPTRNTRTKEALVKHADGNEHDDDDGGVRSTKNVPRGRCGKQVAFKTPEARPTESCGRRNPPHRARGGEGGIGGTNTRLPRNCGVSSGAGDGDGQNRGGRSFFLKSAQGESQNHAAGYRLQLSLSAQQREAAERAVRGRVSTTQAPAETLGGAEDVVDVPCQADDGCDMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAG 2448
            MASP+ NTR+KE LVKHADG+EHDDD GGVRSTK  P GRCGKQVAFKTPEARPTESCG RNPPHRARGGEGGIGGTNTRLPRN GV  GAGDG+GQ R GRSF L+SAQGESQNHAAGYRLQLSLSAQQREAAERA RGR STT+AP +TLGGAEDVVDVPCQADDGCDMFQLGRMQS  NDFAVRGPLHQ KPGGKVCGPVSRYAVRLLVDR+PPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWRE+    A +  R  G
Sbjct:    1 MASPSHNTRSKETLVKHADGSEHDDDGGGVRSTKKQPCGRCGKQVAFKTPEARPTESCGGRNPPHRARGGEGGIGGTNTRLPRNYGVGGGAGDGNGQYREGRSFLLRSAQGESQNHAAGYRLQLSLSAQQREAAERAGRGRASTTEAPMDTLGGAEDVVDVPCQADDGCDMFQLGRMQSVENDFAVRGPLHQSKPGGKVCGPVSRYAVRLLVDRTPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEWREMLYESAEQMARLGG 283
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: F0Y998_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y998_AURAN)

HSP 1 Score: 145 bits (367), Expect = 2.830e-32
Identity = 76/165 (46.06%), Postives = 98/165 (59.39%), Query Frame = 1 
Query: 2107 DMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKW-------------LEDNG---------EWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV 2535
            DMFQLGRM    NDF VRGPLH    GG +CGPVSRYA RL   R PP+ C ++ AGFN+ + + L E +PKW             L+D G         +WDA+T FG+RI KPEIG WREV+V G +   RA  R D  G     E + L++GT++D+ G+Q+
Sbjct:  416 DMFQLGRMIVPQNDFVVRGPLHLDS-GGVLCGPVSRYACRLTCSRRPPYECTLYAAGFNNERDIFLSEQAPKWQLAPGERAADAPPLDDEGKDGGEPDGAQWDALTTFGVRIWKPEIGAWREVSVHGGVHEPRA--RADVAGKRFALENSTLTNGTIVDLAGIQL 577
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A7S3K112_9STRA (Hypothetical protein n=3 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K112_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.630e-28
Identity = 76/195 (38.97%), Postives = 96/195 (49.23%), Query Frame = 1 
Query: 2107 DMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWL-------------------------EDNG---------------------------EWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV 2535
            DMFQLGRM    NDF VRGPLH    GG +CGPVSRYA R+   R PP  C+++ AGFN+ + + L E +PKW                          E NG                           +WDA+T FG+RI KPEIG WREV+V G +   R   R D  G   P E + L+ GT+ID+ G+Q+
Sbjct:  414 DMFQLGRMIVPQNDFVVRGPLHLDS-GGVLCGPVSRYACRITCSRLPPFHCKLYAAGFNNERDIFLSEMAPKWQLKPDEIAADDLDAIEQKEKQIQLQQEYNGTIEKNKNMNASSQMSSSQPKNKDTIGCQWDALTTFGVRIWKPEIGAWREVSVHGGVHEPRQ--RADVAGARYPDENSTLTDGTIIDLAGIQL 605
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A6S8UDS2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8UDS2_9STRA)

HSP 1 Score: 127 bits (320), Expect = 5.860e-28
Identity = 68/163 (41.72%), Postives = 89/163 (54.60%), Query Frame = 1 
Query: 2107 DMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWL--------------------EDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV 2535
            DMFQLGRM    NDF VRGPLH    GG +CGPVSRYA              ++ AGFN+ + + L E +PKW                      D  +WDA+T FG+RI KPE+G WREV+V G +   RA  R D  G   P E + L++GT++D+ G+Q+
Sbjct:  127 DMFQLGRMIVPQNDFVVRGPLHLDA-GGVLCGPVSRYACXXXXXXXXXXXXXLYAAGFNNERDVFLSEQAPKWQLAPGERAADADDAVTDPDAEPDAAQWDALTTFGVRIWKPEVGAWREVSVHGGVHEPRA--RADVAGRRYPDEDSVLTNGTIVDLAGIQL 286
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A8J2WLA8_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WLA8_9STRA)

HSP 1 Score: 127 bits (320), Expect = 6.160e-27
Identity = 68/163 (41.72%), Postives = 89/163 (54.60%), Query Frame = 1 
Query: 2107 DMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWL--------------------EDNGEWDAVTPFGIRILKPEIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV 2535
            DMFQLGRM    NDF VRGPLH    GG +CGPVSRYA              ++ AGFN+ + + L E +PKW                      D  +WDA+T FG+RI KPE+G WREV+V G +   RA  R D  G   P E + L++GT++D+ G+Q+
Sbjct:  206 DMFQLGRMIVPQNDFVVRGPLHLDA-GGVLCGPVSRYACXXXXXXXXXXXXXLYAAGFNNERDVFLSEQAPKWQLAPGERAADADDAVTDPDAEPDAAQWDALTTFGVRIWKPEVGAWREVSVHGGVHEPRA--RADVAGRRYPDEDSVLTNGTIVDLAGIQL 365
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A2J7QIT7_9NEOP (Protein pellino (Fragment) n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=A0A2J7QIT7_9NEOP)

HSP 1 Score: 103 bits (257), Expect = 4.440e-21
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 1 
Query: 2050 TLGGAEDVVDVPCQADDGCDMFQLGRMQSAVNDFAVRGPLHQPKPG-GKVC-GPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPE---------IGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGG 2526
            TL G + V+ V    D+  DMFQ+GR      DF V   + + K G  KV    VSR+A R+L DR+ P   +I+ AGF+S + + L E + KW E NGE D +T  G+ I+ P+          G WREV+V G +  +R  G     G LV GETN L  GT+I + G
Sbjct:   56 TLSGDQTVI-VEYAPDEETDMFQIGRSSEFPIDFVVMDTIPEDKRGKSKVLRSTVSRFACRILCDRTHPRVAKIYAAGFDSSRNIFLGEKAVKWQE-NGEIDGLTTNGVLIMHPQGSFCGGEAKSGLWREVSVGGGVFSMRQLGEAHQKGHLVEGETNVLQDGTLIHLCG 223
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: UPI001454DE38 (protein pellino n=1 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI001454DE38)

HSP 1 Score: 103 bits (257), Expect = 6.050e-20
Identity = 67/170 (39.41%), Postives = 91/170 (53.53%), Query Frame = 1 
Query: 2050 TLGGAEDVVDVPCQADDGCDMFQLGRMQSAVNDFAVRGPLHQPKPG-GKVC-GPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPE---------IGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGG 2526
            TL G + V+ V    D+  DMFQ+GR      DF V   + + K G  KV    VSR+A R+L DR+ P   +I+ AGF+S + + L E + KW E NGE D +T  G+ I+ P+          G WREV+V G +  +R  G     G LV GETN L  GT+I + G
Sbjct:   96 TLSGDQTVI-VEYAPDEETDMFQIGRSSEFPIDFVVMDTIPEDKRGKSKVLRSTVSRFACRILCDRTHPRVAKIYAAGFDSSRNIFLGEKAVKWQE-NGEIDGLTTNGVLIMHPQGSFCGGEAKSGLWREVSVGGGVFSMRQLGEAHQKGHLVEGETNVLQDGTLIHLCG 263
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A8C4R8Y8_EPTBU (Uncharacterized protein n=2 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4R8Y8_EPTBU)

HSP 1 Score: 103 bits (258), Expect = 6.450e-20
Identity = 62/148 (41.89%), Postives = 84/148 (56.76%), Query Frame = 1 
Query: 2095 DDGCDMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILK-PEIGE---WREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGG 2526
            DD  DMFQ+GR      D  V G     + GG VC  VSR+A RL+  R+PPHR R++ AGF++   + L E +PKW   +GE DA+T  G+ +++ P  GE   WREV+V G +  L           LV  ETNEL  G++ID+ G
Sbjct:   86 DDTTDMFQVGRSPEPPIDMVVSGRRQGDELGG-VCT-VSRFACRLICQRNPPHRVRLYAAGFDTSNSIFLGEKAPKWRGSSGEMDALTTNGVLLMQVPNSGERAVWREVSVGGQVFPLSEMRSSRHPEALVRNETNELQDGSLIDLCG 231
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BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Match: A0A3B3RKU9_9TELE (E3 ubiquitin-protein ligase pellino homolog 1-like n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RKU9_9TELE)

HSP 1 Score: 103 bits (258), Expect = 7.850e-20
Identity = 62/176 (35.23%), Postives = 88/176 (50.00%), Query Frame = 1 
Query: 2050 TLGGAEDVVDVPCQADDGCDMFQLGRMQSAVNDFAVRGPLHQPKPGGKVC---------GPVSRYAVRLLVDRSPPHRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKP--------EIGEWREVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGG 2526
            TL  A+ VV V    D   DMFQ+GR   +  DF V   +     GG  C           +SR+A R++  RSPPH  RI+ AGF+S K + L E + KW   +G+ D +T  G+ ++ P        + G WRE++V G +  LR        G +V  ET EL  G++ID+ G
Sbjct:   83 TLSRAQTVV-VEYTHDSSVDMFQVGRSTESPIDFVVMDTVPGSPAGGGSCEGGDLQTVQSTISRFACRIMCQRSPPHTARIYAAGFDSSKNIFLGEKAAKWKTSDGQMDGLTTNGVLVMHPRNGFTEDSKPGVWREISVCGNVFTLRETRSAQQRGKMVENETQELVDGSLIDLCG 257
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6007.16609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ09_ECTSI8.800e-19793.59Pellino homolog 1 n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L190_9PHAE1.530e-16386.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
F0Y998_AURAN2.830e-3246.06Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3K112_9STRA5.630e-2838.97Hypothetical protein n=3 Tax=Aureoumbra lagunensis... [more]
A0A6S8UDS2_9STRA5.860e-2841.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2WLA8_9STRA6.160e-2741.72Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A2J7QIT7_9NEOP4.440e-2139.41Protein pellino (Fragment) n=1 Tax=Cryptotermes se... [more]
UPI001454DE386.050e-2039.41protein pellino n=1 Tax=Cryptotermes secundus TaxI... [more]
A0A8C4R8Y8_EPTBU6.450e-2041.89Uncharacterized protein n=2 Tax=Eptatretus burgeri... [more]
A0A3B3RKU9_9TELE7.850e-2035.23E3 ubiquitin-protein ligase pellino homolog 1-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6007contigEcto-sp13_S_contig6007:305..4390 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score585.5
Seed ortholog evalue4e-164
Seed eggNOG ortholog2880.D7FZ09
Preferred namePELI2
Model size2535
KEGG koko:K11964
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0001817,GO:0001818,GO:0001819,GO:0001932,GO:0001934,GO:0001959,GO:0001960,GO:0002237,GO:0002376,GO:0002682,GO:0002683,GO:0002684,GO:0002694,GO:0002695,GO:0002696,GO:0002759,GO:0002831,GO:0002832,GO:0002920,GO:0002921,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007162,GO:0007165,GO:0007166,GO:0008063,GO:0008150,GO:0008152,GO:0008284,GO:0008285,GO:0008348,GO:0008592,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010605,GO:0010646,GO:0010647,GO:0010648,GO:0010803,GO:0010804,GO:0010941,GO:0014070,GO:0016020,GO:0016301,GO:0016310,GO:0016567,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019787,GO:0022407,GO:0022408,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030155,GO:0030234,GO:0030888,GO:0030890,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031347,GO:0031349,GO:0031396,GO:0031397,GO:0031398,GO:0031399,GO:0031400,GO:0031401,GO:0032088,GO:0032101,GO:0032102,GO:0032268,GO:0032269,GO:0032270,GO:0032446,GO:0032479,GO:0032480,GO:0032496,GO:0032944,GO:0032945,GO:0032946,GO:0033993,GO:0034097,GO:0034121,GO:0034123,GO:0034139,GO:0034141,GO:0034143,GO:0034145,GO:0034450,GO:0036211,GO:0042127,GO:0042129,GO:0042130,GO:0042221,GO:0042325,GO:0042327,GO:0042742,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043331,GO:0043408,GO:0043410,GO:0043412,GO:0043433,GO:0043900,GO:0043901,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045088,GO:0045089,GO:0045751,GO:0045937,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050670,GO:0050671,GO:0050672,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050829,GO:0050863,GO:0050864,GO:0050865,GO:0050866,GO:0050867,GO:0050868,GO:0050871,GO:0050896,GO:0051090,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051251,GO:0051252,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0060548,GO:0060759,GO:0060761,GO:0061630,GO:0061659,GO:0061945,GO:0065007,GO:0065009,GO:0070424,GO:0070426,GO:0070428,GO:0070432,GO:0070434,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070663,GO:0070664,GO:0070665,GO:0070887,GO:0070936,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071944,GO:0080090,GO:0080134,GO:0098542,GO:0098772,GO:0140096,GO:1901564,GO:1901698,GO:1901700,GO:1902524,GO:1902531,GO:1902533,GO:1902914,GO:1902916,GO:1903037,GO:1903038,GO:1903320,GO:1903321,GO:1903322,GO:1903506,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons5
EggNOG free text desc.Toll signaling pathway
EggNOG OGsKOG3842@1,KOG3842@2759
Ec32 ortholog descriptionPellino family
Ec32 orthologEc-06_002020.1
EC2.3.2.27
Cds size2535
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.6095088-CDS-Ecto-sp13_S_contig6007:304..4331681463836.6095088-CDS-Ecto-sp13_S_contig6007:304..433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 305..433 -
1681463836.6242297-CDS-Ecto-sp13_S_contig6007:1276..13941681463836.6242297-CDS-Ecto-sp13_S_contig6007:1276..1394Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 1277..1394 -
1681463836.638471-CDS-Ecto-sp13_S_contig6007:1564..24751681463836.638471-CDS-Ecto-sp13_S_contig6007:1564..2475Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 1565..2475 -
1681463836.6549306-CDS-Ecto-sp13_S_contig6007:2841..29231681463836.6549306-CDS-Ecto-sp13_S_contig6007:2841..2923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 2842..2923 -
1681463836.6645703-CDS-Ecto-sp13_S_contig6007:3095..43901681463836.6645703-CDS-Ecto-sp13_S_contig6007:3095..4390Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6007 3096..4390 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6007.16609.1prot_Ecto-sp13_S_contig6007.16609.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6007 305..4390 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6007.16609.1

>prot_Ecto-sp13_S_contig6007.16609.1 ID=prot_Ecto-sp13_S_contig6007.16609.1|Name=mRNA_Ecto-sp13_S_contig6007.16609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=845bp
MRLCFGRCTATPFFSRKPDATAVDIVASSNRTSTTTSLHADGGIYNHHVV
RAIEPEATEADRTRDAGVDEIYCATAASCPRSRGRPAHESTAIGTLRSGT
PDGLSSSSTSTVEGVTFRPQSRPSAPESVHCRSRSTGHAIGGDSGGKKSS
ATRLASAAYIGNSPTVGGDESKMPATAGALSSTAPPLSLPTSVITEKDNL
LIAEIHDHILRRGVVVDNFVALGAARVCLALMISREAKLEEIDKTGLPEL
ACLARSKLDLSAGATTCLLTQLIDSEMTAARLADPNLRAVLGGIRTSDTF
CAEKQSLFWSRRHPSKEVVHPAISGEEVTQAAEAVLSLSEACRTWRETIE
AITNTTRGSDASSETRRFPLDSSSVESARSSFPPGYRCCALEPPRNLCQP
PPGEGSVLSAAPTVEGVGGVTAGQNGGKQHVRHLLRQAIRVVTSGANNSY
GQLVVLGYKEFSVRDSTWHRVGPKNARFILARRESPNGVQVGGRSGNVDG
GGGGGGGGDAHGGAGAVHKNDTVGSSPSRCQGGMASPTRNTRTKEALVKH
ADGNEHDDDDGGVRSTKNVPRGRCGKQVAFKTPEARPTESCGRRNPPHRA
RGGEGGIGGTNTRLPRNCGVSSGAGDGDGQNRGGRSFFLKSAQGESQNHA
AGYRLQLSLSAQQREAAERAVRGRVSTTQAPAETLGGAEDVVDVPCQADD
GCDMFQLGRMQSAVNDFAVRGPLHQPKPGGKVCGPVSRYAVRLLVDRSPP
HRCRIFTAGFNSRKCLTLPESSPKWLEDNGEWDAVTPFGIRILKPEIGEW
REVTVAGAIRRLRAAGRLDTIGDLVPGETNELSSGTVIDIGGVQV
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mRNA from alignment at Ecto-sp13_S_contig6007:305..4390-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6007.16609.1 ID=mRNA_Ecto-sp13_S_contig6007.16609.1|Name=mRNA_Ecto-sp13_S_contig6007.16609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4086bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6007:305..4390- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATTGTGCTTCGGGCGGTGCACTGCTACTCCATTTTTCTCACGGAA
GCCTGATGCCACTGCAGTTGACATCGTCGCTTCATCGAACCGAACCAGCA
CGACGACATCTCTTCACGCTGATGGTGGCATTTATAACCACCATGTGGTT
AGGGCGATAGAGCCGGAAGCAACAGAAGCAGACCGAACTCGAGACGCTGG
TGTTGATGAGATTTACTGCGCGACTGCTGCTTCATGTCCTAGGTCGAGGG
GACGACCAGCGCACGAGTCTACCGCTATTGGAACATTAAGATCGGGTACT
CCTGATGGTTTGTCGTCGTCTTCGACATCGACTGTGGAAGGTGTGACTTT
TCGGCCACAGTCCCGGCCTTCCGCTCCTGAGAGTGTTCACTGCCGATCGA
GATCAACAGGCCACGCGATCGGAGGAGACAGTGGTGGTAAAAAGAGCAGT
GCAACAAGACTCGCGTCGGCTGCATATATTGGCAACTCGCCCACGGTGGG
CGGAGACGAAAGCAAGATGCCAGCGACGGCGGGCGCGTTATCTTCTACAG
CACCACCTTTATCACTTCCAACATCAGTAATTACGGAGAAGGACAATCTG
CTTATAGCCGAGATTCACGACCACATTCTCCGACGCGGGGTGGTCGTCGA
CAACTTTGTGGCGTTGGGGGCCGCTCGGGTGTGTTTGGCCTTGATGATCT
CGCGCGAAGCAAAGCTGGAGGAAATAGATAAAACGGGTCTACCCGAGCTG
GCCTGTTTGGCGAGATCTAAACTCGACCTCTCTGCAGGTGCTACCACCTG
TCTCCTCACCCAGCTCATTGACAGCGAGATGACAGCCGCTCGACTAGCCG
ACCCCAACCTTCGTGCTGTTCTCGGGGGAATCCGGACCAGCGACACGTTC
TGTGCGGAAAAGCAATCACTTTTCTGGTCGCGACGCCATCCTAGCAAAGA
GGTTGTTCACCCAGCAATATCAGGGGAAGAAGTGACGCAAGCGGCGGAGG
CGGTCTTGTCGCTGTCGGAGGCATGTCGAACTTGGAGAGAAACAATCGAA
GCCATCACTAACACCACGAGGGGTAGCGACGCCAGCAGCGAGACGAGAAG
ATTTCCTTTGGATTCCAGTTCTGTGGAGAGTGCAAGATCTTCTTTTCCTC
CTGGTTACAGGTGTTGTGCTCTGGAGCCACCAAGGAACCTGTGCCAACCT
CCTCCGGGAGAAGGGAGTGTGCTCTCGGCAGCACCCACGGTGGAAGGGGT
CGGAGGGGTAACCGCTGGTCAAAACGGAGGAAAACAACATGTCAGGTGAG
TCGAAACCCATGCATACAGGTTCAAAATCCTTGGGAAGAAACTTCCAATT
TAATCCGTTGAATTCAGTGAGATACTTGCTTTGTTTGGTCGACTTGACCA
GACTCGATCACGCCGTTTTCCGCACACCCTCTTCTTTTTTCGACCGCTCA
TGCCCCGTACTCACTAGGCATCTCCTCCGACAGGCTATCCGCGTAGTCAC
TTCCGGGGCGAACAATAGCTACGGCCAGCTGGTGGTGCTTGGATACAAAG
TAAGCACATCGGGGCAACAAAGAAGATGAAAGCTTGACCATACTGCGCAT
GCCTCTCGGTAATTTCTGCAATCACGCTTGCTTACGTAGACCACCGCTAT
GCCGTTCCCCCCTCGGAAAACATGGACGATATACAGTATCGATGGTACTG
GCACGGATCAGCTCCAAAGTGAGGCATGGGGGAATCCAATTTTCCTTCCC
TGTGTAATATATTCTCACCTTTGTGGAACCTTGTTCTCCGCCTACACTCT
ACGACACGTCGTCTTCTCGTTGCTCCGACATGCCGACAAACTGCTCGGCG
GCATTTTCGTCCTCTTGGTGATCTCTCTGATTTCGACCAACAATTCGGTC
CCGACACGCACGCAGGAGTTTTCTGTGCGCGACTCGACGTGGCACCGCGT
CGGCCCGAAGAACGCAAGATTTATCCTTGCCCGGCGCGAGTCACCGAACG
GAGTTCAAGTCGGCGGCAGGAGTGGTAACGTCGACGGCGGCGGCGGCGGC
GGCGGCGGTGGCGATGCCCATGGCGGTGCTGGTGCCGTCCACAAGAACGA
TACAGTCGGCAGCAGCCCGTCCCGCTGCCAAGGTGGAATGGCGAGTCCTA
CTCGCAACACCCGCACGAAGGAAGCCCTAGTCAAACATGCCGACGGAAAT
GAACACGACGACGACGATGGCGGCGTTAGGTCAACGAAGAATGTACCGCG
CGGCCGCTGCGGGAAGCAGGTGGCGTTCAAGACACCGGAGGCGCGACCGA
CGGAGTCCTGCGGCAGGAGGAACCCGCCCCACAGAGCGCGCGGTGGGGAG
GGTGGGATCGGCGGCACGAACACTAGATTGCCAAGGAACTGCGGTGTGAG
CAGCGGTGCTGGTGACGGTGACGGCCAAAATCGGGGAGGGAGAAGTTTCT
TCCTAAAGAGCGCGCAAGGGGAGAGTCAAAACCACGCCGCCGGCTATCGA
CTACAACTATCGCTTTCCGCGCAGCAGAGGGAAGCAGCCGAACGCGCTGT
CAGAGGGCGCGTGTCAACTACGCAGGCTCCGGCGGAAACGCTGGGGGGAG
CGGAGGATGTGGTGGATGTTCCATGCCAGGCAGACGATGGCTGCGACATG
TTTCAGCTCGGGAGGATGCAGAGTGCCGTAAACGACTTCGCGGTGAGGGG
GCCGCTGCACCAGCCCAAGCCCGGCGGGAAGGTGTGCGGGCCGGTAAGCC
GGTACGCCGTGCGGCTCCTGGTCGACAGGAGTCCCCCGCATCGGTGCAGG
ATATTCACCGCGGGCTTCAACTCGAGGTAAGGTTCACACAAACGAGCGTG
TGGAAGCGATATGCAACGGAGACGTAGGAGGAATGTGGGGATCATGAACT
GCTGCCTAGCCTGTCGGTTGGCACATTCCGAAGAGCAGTACGGTCTAGGT
TAGCTCAGTCGAGCGCACGCACCGCCCCCTCTTTCGAACGTTACAGGAAA
TGCTTGACCCTCCCCGAGTCGTCGCCGAAGTGGCTGGAGGACAACGGGGA
GTGGGACGCCGTCACACCGTTTGGGATCCGCATTCTCAAGCCGGAGATAG
GCGAGTGGAGAGAGGTAAGCGAGTGACGAAGGAAGGACGTTCCGTCGTTA
GGGGTGAGCTTCCACGGGGAAATTATTGTCGCCCGAATAATCTGCGGTGT
TTTCACTTTCCTAGAAGTCGACATCGAAACATTCACAACATTATATGGGT
GCTCGTTTGCGAGAGTCGCGTGTGCTATTCCATCTGTCGCAGTCCTCCAT
TTCTAGCATGGTCCCGTCCCACGAAAGGCACAAAAGAGGGGCAGAGAGCA
CAAGCGTGTCTCTACATAGTAATAGCACTTTCCTCGGGCTTGACAGGAAA
CCGAAAGAAGAGACGAATACATACAAGTGAAAACAACAAGGAGCAGGCGA
GAATGGAATAGTTAAAAAGGTGAAACGGAAGGAGAGACCGTATAGGACAA
CAGAGATAAAACGAAGGACAGCCAGACAGAAGCAAGAGGAAAATGGTTGT
GGCAGTATGCAATATCGCTCGGAAAAGGTCGAAGACAAATTTGACACAAC
TGGCGCAGATGGACATGAGTAGGTGTGGATTACGACTGAACGCTTACCAC
CCACTTGCCTACGGCTGTCTTAGCCGTCTTCACGAATTCGCGTTACCAAC
CTTGAGTATTTTGAGACAGAAGTTGGCAATCCATGGAGATCTATCCCTTT
GTACATTGCACCAAGCCACGACCGACGAGACACGTTGTTGGCGTCCGGGA
GTCCGACGACCTCGTCACAAGGAGAGCGGGAGACATTTGCTGCAGTTTCT
CCTTGCTTTCAAAGGCTTTCTTCGGTCCCACAGAATCACAAAATCCCGGT
GGACCTTTGTCGCCGCACAACCCACGCCGTCGCCTTCGTCGACCTATTCG
AACCAAGGTGACCGTGGCGGGCGCGATTCGCCGGCTGCGCGCGGCTGGCC
GCCTAGACACGATCGGCGACCTCGTTCCCGGCGAAACCAACGAACTATCT
TCGGGGACAGTTATCGACATCGGCGGCGTACAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6007:305..4390-

>mRNA_Ecto-sp13_S_contig6007.16609.1 ID=mRNA_Ecto-sp13_S_contig6007.16609.1|Name=mRNA_Ecto-sp13_S_contig6007.16609.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2535bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6007:305..4390- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGATTGTGCTTCGGGCGGTGCACTGCTACTCCATTTTTCTCACGGAA
GCCTGATGCCACTGCAGTTGACATCGTCGCTTCATCGAACCGAACCAGCA
CGACGACATCTCTTCACGCTGATGGTGGCATTTATAACCACCATGTGGTT
AGGGCGATAGAGCCGGAAGCAACAGAAGCAGACCGAACTCGAGACGCTGG
TGTTGATGAGATTTACTGCGCGACTGCTGCTTCATGTCCTAGGTCGAGGG
GACGACCAGCGCACGAGTCTACCGCTATTGGAACATTAAGATCGGGTACT
CCTGATGGTTTGTCGTCGTCTTCGACATCGACTGTGGAAGGTGTGACTTT
TCGGCCACAGTCCCGGCCTTCCGCTCCTGAGAGTGTTCACTGCCGATCGA
GATCAACAGGCCACGCGATCGGAGGAGACAGTGGTGGTAAAAAGAGCAGT
GCAACAAGACTCGCGTCGGCTGCATATATTGGCAACTCGCCCACGGTGGG
CGGAGACGAAAGCAAGATGCCAGCGACGGCGGGCGCGTTATCTTCTACAG
CACCACCTTTATCACTTCCAACATCAGTAATTACGGAGAAGGACAATCTG
CTTATAGCCGAGATTCACGACCACATTCTCCGACGCGGGGTGGTCGTCGA
CAACTTTGTGGCGTTGGGGGCCGCTCGGGTGTGTTTGGCCTTGATGATCT
CGCGCGAAGCAAAGCTGGAGGAAATAGATAAAACGGGTCTACCCGAGCTG
GCCTGTTTGGCGAGATCTAAACTCGACCTCTCTGCAGGTGCTACCACCTG
TCTCCTCACCCAGCTCATTGACAGCGAGATGACAGCCGCTCGACTAGCCG
ACCCCAACCTTCGTGCTGTTCTCGGGGGAATCCGGACCAGCGACACGTTC
TGTGCGGAAAAGCAATCACTTTTCTGGTCGCGACGCCATCCTAGCAAAGA
GGTTGTTCACCCAGCAATATCAGGGGAAGAAGTGACGCAAGCGGCGGAGG
CGGTCTTGTCGCTGTCGGAGGCATGTCGAACTTGGAGAGAAACAATCGAA
GCCATCACTAACACCACGAGGGGTAGCGACGCCAGCAGCGAGACGAGAAG
ATTTCCTTTGGATTCCAGTTCTGTGGAGAGTGCAAGATCTTCTTTTCCTC
CTGGTTACAGGTGTTGTGCTCTGGAGCCACCAAGGAACCTGTGCCAACCT
CCTCCGGGAGAAGGGAGTGTGCTCTCGGCAGCACCCACGGTGGAAGGGGT
CGGAGGGGTAACCGCTGGTCAAAACGGAGGAAAACAACATGTCAGGCATC
TCCTCCGACAGGCTATCCGCGTAGTCACTTCCGGGGCGAACAATAGCTAC
GGCCAGCTGGTGGTGCTTGGATACAAAGAGTTTTCTGTGCGCGACTCGAC
GTGGCACCGCGTCGGCCCGAAGAACGCAAGATTTATCCTTGCCCGGCGCG
AGTCACCGAACGGAGTTCAAGTCGGCGGCAGGAGTGGTAACGTCGACGGC
GGCGGCGGCGGCGGCGGCGGTGGCGATGCCCATGGCGGTGCTGGTGCCGT
CCACAAGAACGATACAGTCGGCAGCAGCCCGTCCCGCTGCCAAGGTGGAA
TGGCGAGTCCTACTCGCAACACCCGCACGAAGGAAGCCCTAGTCAAACAT
GCCGACGGAAATGAACACGACGACGACGATGGCGGCGTTAGGTCAACGAA
GAATGTACCGCGCGGCCGCTGCGGGAAGCAGGTGGCGTTCAAGACACCGG
AGGCGCGACCGACGGAGTCCTGCGGCAGGAGGAACCCGCCCCACAGAGCG
CGCGGTGGGGAGGGTGGGATCGGCGGCACGAACACTAGATTGCCAAGGAA
CTGCGGTGTGAGCAGCGGTGCTGGTGACGGTGACGGCCAAAATCGGGGAG
GGAGAAGTTTCTTCCTAAAGAGCGCGCAAGGGGAGAGTCAAAACCACGCC
GCCGGCTATCGACTACAACTATCGCTTTCCGCGCAGCAGAGGGAAGCAGC
CGAACGCGCTGTCAGAGGGCGCGTGTCAACTACGCAGGCTCCGGCGGAAA
CGCTGGGGGGAGCGGAGGATGTGGTGGATGTTCCATGCCAGGCAGACGAT
GGCTGCGACATGTTTCAGCTCGGGAGGATGCAGAGTGCCGTAAACGACTT
CGCGGTGAGGGGGCCGCTGCACCAGCCCAAGCCCGGCGGGAAGGTGTGCG
GGCCGGTAAGCCGGTACGCCGTGCGGCTCCTGGTCGACAGGAGTCCCCCG
CATCGGTGCAGGATATTCACCGCGGGCTTCAACTCGAGGAAATGCTTGAC
CCTCCCCGAGTCGTCGCCGAAGTGGCTGGAGGACAACGGGGAGTGGGACG
CCGTCACACCGTTTGGGATCCGCATTCTCAAGCCGGAGATAGGCGAGTGG
AGAGAGGTGACCGTGGCGGGCGCGATTCGCCGGCTGCGCGCGGCTGGCCG
CCTAGACACGATCGGCGACCTCGTTCCCGGCGAAACCAACGAACTATCTT
CGGGGACAGTTATCGACATCGGCGGCGTACAGGTG
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