mRNA_Ecto-sp13_S_contig60055.16606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60055.16606.1
Unique NamemRNA_Ecto-sp13_S_contig60055.16606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A6H5L236_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L236_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.200e-42
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE
Sbjct:  220 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 289
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: K0RBU3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RBU3_THAOC)

HSP 1 Score: 107 bits (267), Expect = 2.200e-27
Identity = 49/83 (59.04%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASEVGGSFHGAVIEMT 249
            D+WSIGVI YILLCGYPPFYG TD  IF SV  G++DFP P+WD +S  AK F+  +L LD ++R TASE     H  +IEMT
Sbjct:   30 DIWSIGVITYILLCGYPPFYGDTDNQIFDSVRTGRFDFPSPDWDNISSTAKDFICSMLKLDGSKRMTASE--SLRHKWIIEMT 110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A836CG63_9STRA (Calcium-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG63_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.220e-27
Identity = 49/70 (70.00%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            DLWSIGVI YILL GYPPFYG TD +IFASV RG++DFP PEWD+VS DAK F+  LL +DP ER TA +
Sbjct:  223 DLWSIGVITYILLSGYPPFYGDTDAEIFASVRRGEFDFPSPEWDSVSADAKDFICSLLRMDPTERLTAPQ 292
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: F0Y8X1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8X1_AURAN)

HSP 1 Score: 110 bits (276), Expect = 1.130e-26
Identity = 47/69 (68.12%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTAS 207
            D+WS+GVIAYILLCGYPPF+G  DK+IF  VS G + FP PEWD +S DAKAFV  LL LDP +RPTA+
Sbjct:  234 DIWSVGVIAYILLCGYPPFFGDNDKEIFRRVSAGSFTFPSPEWDHISGDAKAFVSTLLDLDPEKRPTAA 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A812UKM4_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UKM4_SYMMI)

HSP 1 Score: 109 bits (272), Expect = 1.410e-26
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            DLWSIGV+ Y+LLCGYPPFYG TD +IFASV RG++DFP P+WD +S  AK F+   L +D ++RPTA E
Sbjct:  103 DLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTARE 172
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A7S1GJQ2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJQ2_CYCTE)

HSP 1 Score: 110 bits (275), Expect = 1.970e-26
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            D+WSIGVI YILLCGYPPFYG +D +IF SV  G+YDFP PEWD +S DAK F+G LL +DP +R TA++
Sbjct:  273 DIWSIGVITYILLCGYPPFYGDSDNEIFESVRVGRYDFPSPEWDDISKDAKEFIGFLLKMDPTKRLTAAQ 342
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A812RCN9_SYMMI (Calmodulin (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RCN9_SYMMI)

HSP 1 Score: 109 bits (272), Expect = 2.530e-26
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            DLWSIGV+ Y+LLCGYPPFYG TD +IFASV RG++DFP P+WD +S  AK F+   L +D ++RPTA E
Sbjct:  189 DLWSIGVVTYVLLCGYPPFYGDTDAEIFASVKRGEFDFPSPDWDDISTQAKHFIRACLKIDASKRPTARE 258
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A5D6XJN2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJN2_9STRA)

HSP 1 Score: 108 bits (269), Expect = 5.610e-26
Identity = 48/70 (68.57%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            DLWSIGVI YILLCGYPPFYG TD +IFASV  G+YDF  PEW TVS +AK  + +LL+LD A+R TA E
Sbjct:  122 DLWSIGVITYILLCGYPPFYGDTDPEIFASVRAGRYDFDSPEWTTVSAEAKDLISRLLLLDAAKRLTADE 191
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A1E7FGU1_9STRA (Pkinase-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FGU1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.680e-26
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            D+WSIGVI+YILLCGYPPFYG  D +IF SV  GQ+D+P PEWD +S+ AK FV  LL +DP  RPTA E
Sbjct:  271 DIWSIGVISYILLCGYPPFYGDNDAEIFNSVRSGQFDYPSPEWDEISNSAKQFVSLLLQIDPEMRPTALE 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Match: A0A6B2LC69_9EUKA (Protein kinase domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LC69_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 8.180e-26
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 1 
Query:    1 DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDAKAFVGKLLMLDPAERPTASE 210
            D+WSIGVI YILLCG+PPFYG  D+ IF  + +  YDFP P+WDT+S++AK F+  +L+LD  +RP ASE
Sbjct:  174 DIWSIGVITYILLCGFPPFYGNNDQQIFEKILKADYDFPSPDWDTISEEAKEFISAILVLDYNKRPNASE 243
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60055.16606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L236_9PHAE1.200e-42100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
K0RBU3_THAOC2.200e-2759.04Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A836CG63_9STRA8.220e-2770.00Calcium-dependent protein kinase n=1 Tax=Tribonema... [more]
F0Y8X1_AURAN1.130e-2668.12Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A812UKM4_SYMMI1.410e-2662.86Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A7S1GJQ2_CYCTE1.970e-2665.71Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A812RCN9_SYMMI2.530e-2662.86Calmodulin (Fragment) n=1 Tax=Symbiodinium microad... [more]
A0A5D6XJN2_9STRA5.610e-2668.57Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1E7FGU1_9STRA6.680e-2665.71Pkinase-domain-containing protein n=1 Tax=Fragilar... [more]
A0A6B2LC69_9EUKA8.180e-2658.57Protein kinase domain-containing protein n=1 Tax=A... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60055contigEcto-sp13_S_contig60055:43..306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.5
Seed ortholog evalue3.9e-22
Seed eggNOG ortholog44056.XP_009037159.1
Model size264
KEGG koko:K13412
KEGG Pathwayko04626,ko05145,map04626,map05145
Hectar predicted targeting categoryother localisation
GOsGO:0000165,GO:0000187,GO:0001817,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002224,GO:0002237,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006082,GO:0006464,GO:0006468,GO:0006690,GO:0006691,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009931,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010646,GO:0010647,GO:0010857,GO:0015630,GO:0016192,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0031323,GO:0031324,GO:0031325,GO:0031329,GO:0031330,GO:0031347,GO:0031349,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032496,GO:0032675,GO:0032680,GO:0033554,GO:0033674,GO:0033993,GO:0034097,GO:0035556,GO:0035924,GO:0036211,GO:0042221,GO:0042325,GO:0042327,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043436,GO:0043487,GO:0043488,GO:0043489,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044351,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045859,GO:0045860,GO:0045934,GO:0045937,GO:0046777,GO:0048010,GO:0048255,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051019,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051338,GO:0051347,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070848,GO:0070887,GO:0070935,GO:0071310,GO:0071363,GO:0071704,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0098657,GO:0140096,GO:1900034,GO:1901564,GO:1901568,GO:1901700,GO:1902369,GO:1902373,GO:1902531,GO:1902533,GO:1903311,GO:1903312,GO:1903555
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
EC2.7.11.1
Cds size264
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463836.3024848-CDS-Ecto-sp13_S_contig60055:42..3061681463836.3024848-CDS-Ecto-sp13_S_contig60055:42..306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60055 43..306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60055.16606.1prot_Ecto-sp13_S_contig60055.16606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60055 43..306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60055.16606.1

>prot_Ecto-sp13_S_contig60055.16606.1 ID=prot_Ecto-sp13_S_contig60055.16606.1|Name=mRNA_Ecto-sp13_S_contig60055.16606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
DLWSIGVIAYILLCGYPPFYGRTDKDIFASVSRGQYDFPGPEWDTVSDDA
KAFVGKLLMLDPAERPTASEVGGSFHGAVIEMTRGGGG
back to top

mRNA from alignment at Ecto-sp13_S_contig60055:43..306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60055.16606.1 ID=mRNA_Ecto-sp13_S_contig60055.16606.1|Name=mRNA_Ecto-sp13_S_contig60055.16606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60055:43..306+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTGTGGTCGATCGGCGTGATCGCCTACATCCTGCTGTGCGGCTACCC
GCCCTTTTACGGCAGGACCGACAAGGATATCTTCGCCTCGGTGTCGAGGG
GACAGTACGACTTCCCAGGTCCGGAGTGGGACACCGTTTCGGACGATGCG
AAGGCCTTCGTGGGAAAACTGCTCATGCTTGACCCGGCGGAGAGGCCCAC
GGCGAGCGAGGTGGGTGGATCATTCCATGGTGCGGTCATTGAGATGACGA
GGGGGGGGGGGGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60055:43..306+

>mRNA_Ecto-sp13_S_contig60055.16606.1 ID=mRNA_Ecto-sp13_S_contig60055.16606.1|Name=mRNA_Ecto-sp13_S_contig60055.16606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=264bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60055:43..306+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCTGTGGTCGATCGGCGTGATCGCCTACATCCTGCTGTGCGGCTACCC
GCCCTTTTACGGCAGGACCGACAAGGATATCTTCGCCTCGGTGTCGAGGG
GACAGTACGACTTCCCAGGTCCGGAGTGGGACACCGTTTCGGACGATGCG
AAGGCCTTCGTGGGAAAACTGCTCATGCTTGACCCGGCGGAGAGGCCCAC
GGCGAGCGAGGTGGGTGGATCATTCCATGGTGCGGTCATTGAGATGACGA
GGGGGGGGGGGGGT
back to top