prot_Ecto-sp13_S_contig1014.166.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1014.166.1
Unique Nameprot_Ecto-sp13_S_contig1014.166.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length424
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI)

HSP 1 Score: 625 bits (1613), Expect = 7.370e-223
Identity = 385/425 (90.59%), Postives = 394/425 (92.71%), Query Frame = 0 
Query:    1 MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRG--EREVEIPTLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEILRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFLPEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRNSSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 423
            MNFVRSNEWVSRRRARGGSFDSPA+RVNIVDRRT PASSG+R   EREVEIPTL ILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVA+AGSRMAHMEILRALAPILRQHV+SLD SRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN VSDAAVVAITTGVCRQSLRWLDLT TAIS AA    AASLR LQRLE             VAALARDLRLPAFLPEAPKT+ARSSRALLLGSKWSETQLRSLPKKRAATTAATAAG  AK+WRNS ASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct:    1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN-VSDAAVVAITTGVCRQSLRWLDLTCTAISAAA----AASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQD2_ECTSI7.370e-22390.59Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 214..238
e-value: 5.1
score: 16.1
coord: 162..187
e-value: 0.081
score: 22.0
coord: 136..161
e-value: 720.0
score: 0.0
coord: 109..134
e-value: 400.0
score: 2.0
coord: 188..213
e-value: 0.016
score: 24.4
coord: 269..293
e-value: 400.0
score: 2.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 94..300
e-value: 3.2E-32
score: 113.5
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 137..154
e-value: 0.92
score: 9.7
coord: 188..211
e-value: 0.099
score: 12.8
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 112..293
coord: 70..196
NoneNo IPR availablePANTHERPTHR13382:SF4coord: 112..293
coord: 70..196
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 110..279

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1014contigEcto-sp13_S_contig1014:5212..8578 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1014.166.1mRNA_Ecto-sp13_S_contig1014.166.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1014 3774..8930 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1014.166.1 ID=prot_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRGEREVEIP
TLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEI
LRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLT
GTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFL
PEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRN
SSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEE
GGRKLLLNLVQGIVRLWPAVPSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt