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Homology
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Match: D7FQD2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQD2_ECTSI) HSP 1 Score: 625 bits (1613), Expect = 5.250e-215 Identity = 385/425 (90.59%), Postives = 394/425 (92.71%), Query Frame = 1 Query: 106 MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRG--EREVEIPTLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEILRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGLKDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLTGTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFLPEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRNSSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 1374
MNFVRSNEWVSRRRARGGSFDSPA+RVNIVDRRT PASSG+R EREVEIPTL ILCLRSLESSLGKGLATFDLQDLPLGLAET+YDFVA+AGSRMAHMEILRALAPILRQHV+SLD SRAK+VGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPG+KDL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN VSDAAVVAITTGVCRQSLRWLDLT TAIS AA AASLR LQRLE VAALARDLRLPAFLPEAPKT+ARSSRALLLGSKWSETQLRSLPKKRAATTAATAAG AK+WRNS ASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR
Sbjct: 1 MNFVRSNEWVSRRRARGGSFDSPAVRVNIVDRRTGPASSGVRSGSEREVEIPTLGILCLRSLESSLGKGLATFDLQDLPLGLAETVYDFVASAGSRMAHMEILRALAPILRQHVSSLDFSRAKIVGDSALLELANGCDSSLVQLNLSSCCFITDGALLATLLKCPGVKDLTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGVAYIAYLPALEQLCLARCN-VSDAAVVAITTGVCRQSLRWLDLTCTAISAAA----AASLRDLQRLEXXXXXXXXXXXXXVAALARDLRLPAFLPEAPKTRARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGAPAKSWRNSIASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEEGGRKLLLNLVQGIVRLWPAVPSR 420
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1014.166.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FQD2_ECTSI | 5.250e-215 | 90.59 | Hypothetical leucine rich repeat protein n=1 Tax=E... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 632.1 |
| Seed ortholog evalue | 1.9e-178 |
| Seed eggNOG ortholog | 2880.D7FQD2 |
| Model size | 2815 |
| KEGG ko | ko:K10268 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG free text desc. | modulation by host of viral RNA genome replication |
| EggNOG OGs | KOG4341@1,KOG4341@2759 |
| Cds size | 1272 |
| COG Functional cat. | KLT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko04121 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462510.1806986-UTR-Ecto-sp13_S_contig1014:3773..5211 | 1681462510.1806986-UTR-Ecto-sp13_S_contig1014:3773..5211 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1014 3774..5211 - |
| 1681462510.2296557-UTR-Ecto-sp13_S_contig1014:8578..8625 | 1681462510.2296557-UTR-Ecto-sp13_S_contig1014:8578..8625 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1014 8579..8625 - |
| 1681462510.2390375-UTR-Ecto-sp13_S_contig1014:8872..8930 | 1681462510.2390375-UTR-Ecto-sp13_S_contig1014:8872..8930 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1014 8873..8930 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462510.1914356-CDS-Ecto-sp13_S_contig1014:5211..5808 | 1681462510.1914356-CDS-Ecto-sp13_S_contig1014:5211..5808 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1014 5212..5808 - |
| 1681462510.2007587-CDS-Ecto-sp13_S_contig1014:6266..6404 | 1681462510.2007587-CDS-Ecto-sp13_S_contig1014:6266..6404 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1014 6267..6404 - |
| 1681462510.2103322-CDS-Ecto-sp13_S_contig1014:6857..7031 | 1681462510.2103322-CDS-Ecto-sp13_S_contig1014:6857..7031 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1014 6858..7031 - |
| 1681462510.2204475-CDS-Ecto-sp13_S_contig1014:8215..8578 | 1681462510.2204475-CDS-Ecto-sp13_S_contig1014:8215..8578 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1014 8216..8578 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1014.166.1 >prot_Ecto-sp13_S_contig1014.166.1 ID=prot_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=424bp
MNFVRSNEWVSRRRARGGSFDSPALRVNIVDRRTRPASSGIRGEREVEIP
TLSILCLRSLESSLGKGLATFDLQDLPLGLAETMYDFVAAAGSRMAHMEI
LRALAPILRQHVNSLDLSRAKVVGDSALLELANGCDSSLVQLNLSSCCFI
TDGALLATLLKCPGLKDLTLSGCRGITDETAYHLPHRCTKLTTLNLAGLE
GITGSGVAYIAYLPALEQLCLARCNQVSDAAVVAITTGVCRQSLRWLDLT
GTAISGAAGTAAAASLRGLQRLEYLALSSTSVSATSVAALARDLRLPAFL
PEAPKTKARSSRALLLGSKWSETQLRSLPKKRAATTAATAAGVTAKTWRN
SSASVICYERDGPSKAMRLIGAASRVSSSSSSPCADDLVEVGFRDDGIEE
GGRKLLLNLVQGIVRLWPAVPSR* back to topmRNA from alignment at Ecto-sp13_S_contig1014:3774..8930- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1014.166.1 ID=mRNA_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5157bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1014:3774..8930- (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGCACATCCATCAAATCAATTTACGCCTAGACGGCGGAAGTGCAAGTT
GTGGAAATGTGAGTGGTCTTCTGGCCTTGCTGCTGCCCACACGTCCTGTG
ATATGTACCATTAATTGCACTTAGTAGGGATGGATGGTCGCTTTTGTCTT
GTAAGTGAGACTACAAGCAGCAGACTGAACATGCACCAAATGCCGAAGAG
GTTCAAGGGTTGAACCAATACAGCAGCAGCTGTACTCAGAGCACACCCGC
TAAACAGGGTTTACGAATCTCTCTACGCATCCCCCTTCCCACCCCCATCG
CCCAGACCAACCGGCGGGGGCTGCTGCGAACAGATAAGGCGCTGCTACGT
TGATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGC
GGCGGGTCTTTCGACTCACCGGCGCTACGAGTCAACATCGTCGACCGCCG
AACTCGTCCCGCAAGCAGCGGCATCAGAGGCGAACGGGAGGTTGAGATCC
CAACTTTAAGCATTCTTTGCCTCCGAAGCTTGGAGTCGTCCCTCGGCAAG
GGCCTCGCGACCTTCGACCTTCAGGACCTTCCCCTCGGGCTGGCCGAGAC
TATGTACGACTTCGTTGCCGCCGCCGGTTCGCGAATGGCCCACATGGAAA
TCCTTCGAGCGCTCGCCCCAATTTTGCGGCAGCACGTAAACTCCCTCGAC
TTGAGCAGAGCCAAGGTCAGGGTCCCATCACGAGGCTGTTGTTGACTATG
TACGTCGTATATGCTACACATACTGTGACGAGTACCAGGTGTACTACTGT
CCAGGAGTATGTTGCGGCGGGGGTTCGGACTTAGGGTCGGTCTTAACCAA
GAAATCGGTTCCCGATTTCGAATTTGATTATAAGAATACAAGAGGCGGAT
CTACCTGAATCCGACCTGAAATGGCCCGTGTGTCTTAACGGGAGATCTGC
CAGATGGATGGAAACGAATATCCGCAGTCCACCGCGAACAACCCGAGAGG
TCCGCCGCTTGCCGACTGCCAAGTTGCTGTTGTAACGTCTGTCATGATGT
GGCCACACCACATGAGGAGCTATCGCTCCCGAGATGCACACACCAAACGC
GTACATGGCCTGCGCGGGGTACTGACACGACGTCTATGCATGTGAGACTC
TGAATCGAGCCTCGTCAAACAGAAAGCTACCGATTTGTCTGAGTATTTGA
GGTTCGACAACCCACGGGAGATTGCGCCACAGACCAGTTCATCCCACACA
CGTTTTTTTTCGGCGCCAGTCAGGTGCAACAACGATGCGCAGTCACCCAC
CCTTTGGGTTGGCTTTTTGTGCTCTCTCTCTCCTCCACGCTCGGCGGTGG
ATGGGGTTCGTGTGGATGGGGGTGGGTGGGCATGCGCCGTACGGGCGAGT
AGACCGCTAATGTTCGAAGTTGGTTTCGTTTCACCCAAATCGGGATCCGA
TTAAATCATTTTACCTTTATTTTGATTCCCGATTTGGAGAGAGGGGATCT
GATTATAAGTCCTAAAGATTCCACGGGTTCCAGAACTTTTAGCCAATCAA
CAAGAGAGTTCTTTGGATCTTGTGGTCTTATAATCAAATCGGGAAGTGAA
ATGGGGAACCGATTTCTTGGTTAAGACCGGCTCTTAGCACCGGTAAGCAG
TTACAACATTTTGGGAGGAAGTCGTTCGATTGTTTGTGCTGTACATCGCA
ATAACCTACGTGACAAATACATTGGGGTGACGGACCGCGGCATTCATTTT
TCGCTCGATGGGGCTAGTACTTTGTGCGTAGTCTATGTGTTGCGGCACCT
TTCGAAGACTGCCCACAAAGCGGGAGACGACTGTACAGCCTGTAAGCGTA
GTAATGCGATTCCATTTTACGCAGCATGTCTTCCGTCTACTTGTGATAGG
TCGTGGGGGACTCGGCCCTGCTGGAGCTGGCAAATGGGTGCGACTCATCT
CTAGTTCAGCTTAACCTCAGCAGCTGCTGTTTCATCACGGACGGTGCTCT
CCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGATCTCACCCTTTCGG
GGTGCCGCGGTATCACTGATGAGGTGCACTATGCGAGTAGTAAAGCTACA
TACCCGTGCCGCTGTTTGGTTTCACAAGAGTCGCATTGAGAACGTATCTG
AGTGAGCAAGTTTGTTCAGCATTATTTATCCATCTGTTGCATGCGTCGTG
TAGAAGGAGCCGAAACGTGCGGTACTCAAACCGTACCACGAAGCTGACCC
CTCTCCGCCTGCGCAGCTGTTCGGACGTTTGCTGAAGTGCCGCAGCAAGA
CCTGCTCAACAATTGCCAATTTTGTTTTTATGACACCAGCACTTCCTGCT
GTGCAACGGGAAAGGCATCATCATGTACCGCTGTATAGGTCGCGCTTCAC
ACAGGTCGGTAAAGTGGACTATTTACCCCGTGCACGCGAGTCACTTAGTA
AGATGCTCAGCATTAGCATCATCCTTTGGTCCGCGTTGTTGTTGTCTCCG
TCGTTTCGACTCAACTCGTACCGCAGACTGCTTACCATTTGCCGCACCGA
TGCACGAAGCTGACAACACTCAACCTGGCGGGACTCGAAGGGATAACCGG
AAGTGGCGTGGCCTACATTGCCTACCTCCCTGCCCTCGAGCAGCTTTGCC
TCGCGAGATGCAACGTGAGAGAGCGTTGTACAAATTTCTCTTGTCGTACC
GTACGTCGAATGGTGGAAGAACGACACGATAATGCAGCTTTTCGGCTACC
TCTCACGAAGAAGTAGGAGGAAGAGGAGGAATTGAGTGTTTTTCCGGGCG
GCGGGCGGACGGTCGGGGTAGGGAGGGGGGCGTGCGGCGACCTTGCCCGC
CGTCGCTTTCCTTGGAGTACTGTAGATCGTTTGCGCAACGGGCGCGTCTT
CCGTTATTTAGAGCACAAGGTTTCTACGCGTTTCGTGGCCTGCGATAAAA
CAAAACTACCTGTATGCATGTATGTGTCGTACAACACAGCAGTGACGGGA
GCATGAGTCGGGTATAGGCAAAACGTGTACACATGCCAGCTGGTGTCTCC
CAACACCCTTCGCCCCCTGCTCTCCGCCTTAGCTTTCTCGTGCTCTCTCC
CCACCCTCCCCACGTCGCACAGCAGGTCAGCGACGCCGCTGTGGTCGCGA
TCACGACCGGCGTGTGCCGGCAGTCCTTGAGGTGGCTGGACCTAACCGGC
ACGGCGATATCGGGCGCGGCAGGCACGGCGGCCGCGGCGTCCCTCCGAGG
CCTGCAGCGGCTGGAGTACCTCGCCCTGTCCTCGACGAGCGTGTCCGCCA
CGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTACCCGCCTTCCTCCCG
GAGGCGCCCAAGACGAAGGCACGGTCCAGCCGCGCGCTTCTGCTGGGATC
GAAGTGGTCTGAAACGCAGCTCCGTAGCCTGCCGAAAAAACGGGCGGCGA
CGACGGCGGCGACGGCGGCAGGGGTCACCGCCAAAACTTGGCGAAACAGC
AGTGCGTCGGTCATCTGCTACGAGCGTGACGGCCCGAGCAAGGCGATGCG
CCTAATCGGGGCGGCTAGTCGAGTGTCCTCTTCTTCCTCCTCTCCATGCG
CGGACGATCTTGTGGAGGTGGGCTTCCGAGACGACGGCATCGAAGAGGGG
GGACGGAAGCTGCTACTGAACCTGGTGCAAGGCATCGTGAGGTTGTGGCC
GGCGGTTCCCTCGCGCTGAACAAAAAGTGTTGTCTGTGACATAATTCGCG
AGAATATTGATCACTCGCGGTCGAAGTTTCAATCCGCCAGCCGGAGCTCG
AGCCCCCGGCCGGTAAGTTGCCCCTGTCGCCGTGCGGGTGACCCTGTGGT
CATGTTTGTTTTTGTGCGGTACGTGTATGATTATCTGGTGCCAGTACTCA
TGCATGGGTTTGTAGTTGTGCGACACGTCTGCTGTGGCGACGAGGATCGA
TAACGTGGTGGCCGCTTTCATATTTTCCTGCGTATTGTCGCGAGATAATT
CCATTGATGTTTACCTTTATACTTGGAGCCTGATGCGATATATGGGACAG
CGTCTTGACTGTACATAAGCTTTCGGGCTTTGCTTGCTGCAAACCTGTTA
ATACTGTTTGCCACACATGCCCTGGACAGCTCGCCGTGCCGTGGATTTAT
ACGGCGAAGACTTCTTCGGGTGTCGAGAGATCTTTTTCCACATGTATGTA
TGAGTCTTCGTCGGAGACCTACTGTAAGATTTAGTAGGCAGGAGACCGGA
TTAGTTGCTGCCTGAGGTTTGGAGAGTGCTTTCCACCAAAAAATGACCGT
GTACAAGTGGTACGTACAACGTTACGTCAATAGAGGAATGTGGAGTGAGA
TTTACGAGAGGTCAGCGTGGCACGAGACACACTTCGCGATGTTGGTTGAC
CGGGTCATGCATGTACAATATCTGAAGCGAGATTCCGTCGAAGAACGTGG
GTTTGCGGTGATGGCCGGTTTGGAACCGTAGGTGCCGGACATCTCATGTC
GCCGTCGGGTGTTTCCTGGCTGGTGACTTCGATAGTTCGCCTCGCGTACA
CGTAACACGCACTTGCCGTATTCCAGCTTCGAAGGACGTCGGAAGTCGGG
GCGGCACGCGGGATACAACCTTCACAGATAGGTTTTCCAAGCAGTACGGC
GGATGTGGTATGCATGCAAACGATGTTTTGTTGTGAAGGTTGTCGCGATT
TGGTGAAAAACGTGGTTTGTTTGCGTGCCTTCTTGTTTTTGTGTGTACAT
GCTCGGCTTCGGCGAAGGCCGGAACATGGTGGACGGATGTCTGTACCTGA
CTGTAAATATGATTTCTCTTGCGGTATATGGGTTCGGTCTCATCAACAAG
CCTCTGGTTTAGAAAGATGCAAGGTGTGGGAAGGTGTGGGGCGTTTATCG
GGAGACATGCATGTGTTTGCGTTGTGGTTTCAATCTGCGATCGGCACGTG
GCCAGCTAAGCTTAAGCTTCGACCGCGAAATACATGAGTTGAAACTGCGG
CCAAGGAAGAATTGCCCGTCATGGTCAACTATGTCACCTCGCCCGGCCAG
CTTCTTACCACAGCAGCTCTGTGTAGAGTAACCGTTAAGTCGGGAGAGCG
CCTTACGCATTCACCAAGGAAGGCGGCGACCAAGCACCAACTGATCGTGT
TCTTGAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1014:3774..8930- >mRNA_Ecto-sp13_S_contig1014.166.1 ID=mRNA_Ecto-sp13_S_contig1014.166.1|Name=mRNA_Ecto-sp13_S_contig1014.166.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1014:3774..8930- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATTTCGTGAGGTCTAACGAGTGGGTTTCTCGCCGCCGTGCACGCGG
CGGGTCTTTCGACTCACCGGCGCTACGAGTCAACATCGTCGACCGCCGAA
CTCGTCCCGCAAGCAGCGGCATCAGAGGCGAACGGGAGGTTGAGATCCCA
ACTTTAAGCATTCTTTGCCTCCGAAGCTTGGAGTCGTCCCTCGGCAAGGG
CCTCGCGACCTTCGACCTTCAGGACCTTCCCCTCGGGCTGGCCGAGACTA
TGTACGACTTCGTTGCCGCCGCCGGTTCGCGAATGGCCCACATGGAAATC
CTTCGAGCGCTCGCCCCAATTTTGCGGCAGCACGTAAACTCCCTCGACTT
GAGCAGAGCCAAGGTCGTGGGGGACTCGGCCCTGCTGGAGCTGGCAAATG
GGTGCGACTCATCTCTAGTTCAGCTTAACCTCAGCAGCTGCTGTTTCATC
ACGGACGGTGCTCTCCTCGCGACGCTGCTCAAGTGCCCTGGTCTGAAGGA
TCTCACCCTTTCGGGGTGCCGCGGTATCACTGATGAGACTGCTTACCATT
TGCCGCACCGATGCACGAAGCTGACAACACTCAACCTGGCGGGACTCGAA
GGGATAACCGGAAGTGGCGTGGCCTACATTGCCTACCTCCCTGCCCTCGA
GCAGCTTTGCCTCGCGAGATGCAACCAGGTCAGCGACGCCGCTGTGGTCG
CGATCACGACCGGCGTGTGCCGGCAGTCCTTGAGGTGGCTGGACCTAACC
GGCACGGCGATATCGGGCGCGGCAGGCACGGCGGCCGCGGCGTCCCTCCG
AGGCCTGCAGCGGCTGGAGTACCTCGCCCTGTCCTCGACGAGCGTGTCCG
CCACGTCCGTGGCGGCACTCGCCCGCGACCTGCGATTACCCGCCTTCCTC
CCGGAGGCGCCCAAGACGAAGGCACGGTCCAGCCGCGCGCTTCTGCTGGG
ATCGAAGTGGTCTGAAACGCAGCTCCGTAGCCTGCCGAAAAAACGGGCGG
CGACGACGGCGGCGACGGCGGCAGGGGTCACCGCCAAAACTTGGCGAAAC
AGCAGTGCGTCGGTCATCTGCTACGAGCGTGACGGCCCGAGCAAGGCGAT
GCGCCTAATCGGGGCGGCTAGTCGAGTGTCCTCTTCTTCCTCCTCTCCAT
GCGCGGACGATCTTGTGGAGGTGGGCTTCCGAGACGACGGCATCGAAGAG
GGGGGACGGAAGCTGCTACTGAACCTGGTGCAAGGCATCGTGAGGTTGTG
GCCGGCGGTTCCCTCGCGCTGA back to top
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