mRNA_Ecto-sp13_S_contig600.16592.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig600.16592.1
Unique NamemRNA_Ecto-sp13_S_contig600.16592.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: D7G450_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G450_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 3.660e-182
Identity = 277/390 (71.03%), Postives = 320/390 (82.05%), Query Frame = 1 
Query:  343 ETQRGLATLGGDLRSGLGAIGTAVMAEDTGIRADVREVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMRSAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNVFQT--GPPMTASAPQQDAPTDRSALMELFDATRGSSWKNNTGWATSAPLQQWHGVTVDGTGRVITLDLGENNLSGPIPSALGGLTALQKLYL 1506
            + Q GLATLG DLRSGLG IG AVM+E TGIR DVREVKRDLASVRESVEDCRAEN++FF SFTAGLEAAQQGIE+MRSAPLEEA MSLKNFE S+GNVRFLE AH KA+TALVQGHTLDVKLSA +IA+SAGY+H+SK   ++ P +AK FTVN TLANV+ HFAPTWSDPSRAS ADGKKTVSFLLNIVSCV ALPPESVPVLSNLDKRLLP  GALCSAEPELRR+Y  VAG AV AML+Q+T++ L  LA+ V VDVD+CTSKE+++QALL+SGK L+PS A + QAV+++N    T   P     AP +DA TDR+ LMELF+ T+G SW  +T W TS+ L +W+GVTV+  GRV  LDL +NNL+GPIP +LGGLTAL  L L
Sbjct:    2 QAQHGLATLGSDLRSGLGTIGMAVMSEATGIRTDVREVKRDLASVRESVEDCRAENMEFFASFTAGLEAAQQGIEIMRSAPLEEARMSLKNFEGSKGNVRFLETAHSKALTALVQGHTLDVKLSAAVIAVSAGYIHMSK---VDCPSEAKDFTVNATLANVISHFAPTWSDPSRASKADGKKTVSFLLNIVSCVRALPPESVPVLSNLDKRLLPAFGALCSAEPELRRMYHTVAGVAVRAMLEQQTMKGLFQLAEEVDVDVDACTSKESVIQALLASGKCLLPSGATSGQAVIKSNPPVPTRVSPVKAMPAPVRDARTDRTVLMELFNTTKGPSWTTSTAWGTSSSLGEWYGVTVNAEGRVTKLDLEKNNLTGPIPPSLGGLTALLLLRL 388
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5KAT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAT8_9PHAE)

HSP 1 Score: 468 bits (1204), Expect = 7.850e-159
Identity = 256/375 (68.27%), Postives = 280/375 (74.67%), Query Frame = 1 
Query:  415 MAEDTGIRADVREVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMR-SAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNVFQTGPPMTASAPQQDAPTDRSALMELFDATRGSSWKNNT---------------------------GWATSAPLQQWHGVTVDGTGRVITLDLGENNLSG 1455
            MAE TGI ADVREVKRDLASVRESVEDCRAEN+ FF SFTAGLEAA+QGIE+MR +APLEEA+M+LKNFEAS+GNVRFLE AH KAMTALVQGHTLDVKL+A +IA+SAGYVH+SK   ++ P +AK FTVNGTLANVV HFAPTWSDPS ASTADGKKTVSFLLNIVSCV  LPPES  VLSNLD+R+LP   ALCSAEPELR +YPKVAG  V AML+QKT+R+L HLADMVGVDV+SCTS EAMVQ LLSSGK L+P P P                         +A TDRSALMELF+AT GSSW N T                           GW TS PLQQWHGVTVDG GRV TLDL  NNLSG
Sbjct:    1 MAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRVNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHTLDVKLNAAVIAVSAGYVHMSK---VDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLVLPPESASVLSNLDERILPAFCALCSAEPELRCMYPKVAGAVVGAMLEQKTMRDLFHLADMVGVDVESCTSHEAMVQVLLSSGKALLPGPVP-------------------------NATTDRSALMELFNATNGSSWTNKTXXXXXXXXXXXXXXXXXXXXXXXXXXXGWGTSTPLQQWHGVTVDGAGRVTTLDLSGNNLSG 347
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5K3B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B9_9PHAE)

HSP 1 Score: 384 bits (986), Expect = 2.240e-126
Identity = 224/447 (50.11%), Postives = 278/447 (62.19%), Query Frame = 1 
Query:  121 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEHESDALVEWSGDVVLKARDESRRTQQRLSGSAARAVAQHREETQRGLATLGGDLRSGLGAIGTAVMAEDTGIRADVREVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMRSAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNVFQT------GPPMTASAPQQDAP-----TDRSALMELFDATRG-------------SSWKNNTGWATSAPLQQWH 1389
            MSGLEP IP AWGALRLT+SL+TAGFKKLVGVE ES+ L+EWSGDVVLKARD+S  T+Q+  G  + A+   R   Q G                               EV+RDL SVR SVE CRAEN+ FF +F + +EA Q G++V+R+ PLEEA MSLK FEAS  +V  L+ A  KA TALV G TL++K +A  I ISAGYVH  KA S   P +AK  TV G+LANVV+HFA  W+DPSR+ T + +K +SFLLN+VSCVC LPPE+VPVL  LD RLLP  GALC++EPELRRLYP V G AV AML++KT++ L  LA  VG DV +CTSK+ +++ L +S + L+P+ A   + VV+   V +T      GP     AP    P     TD  ALM L+  T G               W+N  GW T APL  W+
Sbjct:    1 MSGLEPLIPFAWGALRLTSSLLTAGFKKLVGVEDESNGLIEWSGDVVLKARDKSLLTKQQGRGDGSAAM---RASEQHG------------------------------HEVRRDLESVRASVEQCRAENMLFFTTFMSSIEATQHGVDVLRNGPLEEAHMSLKEFEASGDDVDELKEASRKARTALVTGSTLEIKFTAATITISAGYVHKMKAGS---PSEAKQATVKGSLANVVKHFATIWADPSRSGTVEERKVLSFLLNVVSCVCVLPPENVPVLPELDSRLLPAFGALCASEPELRRLYPDVGGAAVKAMLEEKTMQSLFELATEVGADVTACTSKDGVIEILSTSERDLVPTQATACKGVVE--EVVRTPLPSGKGPAPAVVAPIPAPPVGSTSTDMGALMALYFQTNGPPEKKGRLWAAAKGGWRNRRGWGTFAPLGDWY 409
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5K720_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K720_9PHAE)

HSP 1 Score: 372 bits (954), Expect = 7.530e-120
Identity = 205/378 (54.23%), Postives = 254/378 (67.20%), Query Frame = 1 
Query:  472 SVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMR----SAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNV-------------FQTGPPMTASA---------PQQDAPTDRSALMELFDATRGSSWKNNTGWATSAPLQQWHGVTVDGTGRVITLDLGENNLSGPIPSALGGLTALQKLYLHVNKLSG 1527
            SV  SV++CR+EN QFF SFT GLEA  +GI+ +     SAPL+EAEM+LKNF AS+G VRFL+ A  KA+TALVQGHT+DVKLSA +IA+SAGYV  SK    ESP +AK FTVNGTL N+V   AP W D SR ++ADG K ++FLLN+VSCVCALPP + PVL +LDKRLLP  G LC+ EPE+ R+YP+V G A  A+L  +T+R+L  LAD V VDV  CTSK+ ++Q LL+SGK L  +PA   +A+++   V                  P+             P +DA TDR+AL+ LF AT G SWK  T W TSAPL +W+GVTVD  GRV  L+LG+N LSG +P  L  LTAL  L LH NKLSG
Sbjct:  142 SVSASVDECRSENEQFFKSFTQGLEATHRGIQTLMAMQLSAPLKEAEMALKNFTASKGQVRFLDEARSKALTALVQGHTVDVKLSAAVIAVSAGYVFASKT---ESPLEAKQFTVNGTLVNIVDVLAPLWVDSSRGASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPEIYRMYPEVGGVAARALLAIQTMRDLFELADEVDVDVAKCTSKDEVIQILLASGKALFRAPATGVKAMLEGQTVSDLWLLARENDVDMDRCKPLVIKILLGSGKDLKPTRDASTDRAALLALFIATNGPSWKKGTAWGTSAPLGEWYGVTVDDDGRVSQLELGDNGLSGALPPELARLTALTVLDLHGNKLSG 516
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: D8LD84_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD84_ECTSI)

HSP 1 Score: 366 bits (940), Expect = 2.360e-116
Identity = 200/377 (53.05%), Postives = 250/377 (66.31%), Query Frame = 1 
Query:  472 SVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMRSAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNVFQ-------------------------TGPPMTASAPQQDAPTDRSALMELFDATRGSSWKNNTGWATSAPLQQWHGVTVDGTGRVITLDLGENNLSGPIPSALGGLTALQKLYLHVNKLSG 1527
            SV  SV++CR+EN  FF SFT GL A  +GIE + SAPL+EAEM+LKNF AS GNVRFL+ AH KAMTALVQGHT+DVKLSA +IA+SAGYV  SK    +SP +AK FTVNGTL N+V   AP W D SRA++ADG K ++FLLN+VSCVCALPP + PVL +LDKRLLP  G LC+ EP + R+YP++ G A  A+L  +T+R+L  LAD V VDV  CTSK+ ++Q LL SGK L  +PA   +A +++  +                           +G  +    P +DA TDR+AL+ LF AT G SW  +T W T+APL +W+GVTVD  GRV  L+L EN LSG IP     LTAL KL L  N L+G
Sbjct:  258 SVSASVDECRSENELFFKSFTQGLAATHRGIETLMSAPLKEAEMALKNFTASGGNVRFLDVAHSKAMTALVQGHTVDVKLSAAVIAVSAGYVFASKT---DSPLEAKQFTVNGTLVNIVDVLAPLWVDSSRAASADGPKVLAFLLNLVSCVCALPPVAEPVLPDLDKRLLPAFGTLCATEPGIYRMYPEIGGVAARALLASQTMRDLFELADEVDVDVARCTSKDEVIQILLGSGKALFRAPATGVEAKLESQTMLDLCQLAREKDVDIDRYKTHVIKILLGSGKDLN---PTRDASTDRAALLALFIATNGPSWTTSTAWGTAAPLGEWYGVTVDDDGRVSQLELRENGLSGVIPPEFARLTALTKLNLGENNLTG 628
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5JWQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ1_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 1.740e-99
Identity = 161/237 (67.93%), Postives = 176/237 (74.26%), Query Frame = 1 
Query:  763 SSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSFLLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGTAVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPAPTAQAVVQTNNVFQTGPPMTASAPQQDAPTDRSALMELFDATRGSSWKNNTGWATSAPLQQWHGVTVDGTGRVITLDLGENNLSGPIPSAL 1473
            S ++ P +AK FTVNGTLANVV HFAPTWSDPS ASTADGKKTVSFLLNIVSCV ALPPES PVLSNLD+R+LP   ALCSAEPELR +YPKVAG  V AML+QKTIR+L HLAD VGVDV+SCTS EAMVQ LLSSGK L+P   P                         +A TDRSALMELF+AT+GSSW N TGW TSAPLQQWHGVTVDG GRV TL LG N LS  +  +L
Sbjct:    2 SKVDCPSEAKDFTVNGTLANVVSHFAPTWSDPSCASTADGKKTVSFLLNIVSCVLALPPESAPVLSNLDERILPAFCALCSAEPELRYMYPKVAGAVVGAMLEQKTIRDLFHLADTVGVDVESCTSHEAMVQVLLSSGKALLPGSVP-------------------------NATTDRSALMELFNATKGSSWTNKTGWGTSAPLQQWHGVTVDGAGRVTTLKLGWNKLSDSLEDSL 213
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5KIE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE6_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 8.920e-63
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 1 
Query:  376 DLRSGLGAIGTAVMAEDTGIRADVREVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMRSAPLEEAEMSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVHVSKASS 768
            D RSGLGAIGTAVMAE TGI ADVREVKRDLASVRESVEDCRAEN+ FF SFTAGLEAA+QGIE+MR+APLEEA+M+LKNFEAS+GNVRFLE AH KAMTALVQGH LDVKL+A +IA+SAGYVH+SK SS
Sbjct:    5 DHRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIELMRNAPLEEAQMALKNFEASKGNVRFLETAHSKAMTALVQGHALDVKLNAAVIAVSAGYVHMSKVSS 135
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5JUZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.370e-33
Identity = 69/76 (90.79%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:  121 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEHESDALVEWSGDVVLKARDESRRTQQRLSGSAARAVAQHREET 348
            MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVE ESDALVEWSGDVVLKARD SRRTQQ+ S +AARAV QHREET
Sbjct:    1 MSGLEPFIPLAWGALRLTASLVTAGFKKLVGVEDESDALVEWSGDVVLKARDTSRRTQQKGSDAAARAVEQHREET 76
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5KPC4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC4_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 9.490e-32
Identity = 68/75 (90.67%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:  343 ETQRGLATLGGDLRSGLGAIGTAVMAEDTGIRADVREVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIE 567
            ETQRGLATLG DLRSGLGAIGTAVMAE TGI ADVREVKRDLASVRESVEDCRAEN+ FF SFTAGLEAA+QGIE
Sbjct:   17 ETQRGLATLGRDLRSGLGAIGTAVMAEATGIHADVREVKRDLASVRESVEDCRAENMVFFASFTAGLEAARQGIE 91
[Close]
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Match: A0A6H5KJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG9_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 6.460e-21
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:  343 ETQRGLATLGGDLRSGLGAIGTAVMAEDTGIRADVREVKRDLASVRESVEDCRAENIQ 516
            +TQ GLATLGGDLRSGLGAIGTAVMAE TGIRADVREVKRDLASVRESVE CRAEN++
Sbjct:    2 QTQHGLATLGGDLRSGLGAIGTAVMAEATGIRADVREVKRDLASVRESVEVCRAENME 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig600.16592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G450_ECTSI3.660e-18271.03Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KAT8_9PHAE7.850e-15968.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B9_9PHAE2.240e-12650.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K720_9PHAE7.530e-12054.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD84_ECTSI2.360e-11653.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWQ1_9PHAE1.740e-9967.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIE6_9PHAE8.920e-6383.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUZ0_9PHAE1.370e-3390.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KPC4_9PHAE9.490e-3290.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KJG9_9PHAE6.460e-2189.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig600contigEcto-sp13_S_contig600:8563..22316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score531.6
Seed ortholog evalue4.1e-148
Seed eggNOG ortholog2880.D7G450
Model size1529
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Cds size1527
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463835.2436507-CDS-Ecto-sp13_S_contig600:8562..86361681463835.2436507-CDS-Ecto-sp13_S_contig600:8562..8636Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig600 8563..8636 -
1681463835.2556496-CDS-Ecto-sp13_S_contig600:14577..152621681463835.2556496-CDS-Ecto-sp13_S_contig600:14577..15262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig600 14578..15262 -
1681463835.2710319-CDS-Ecto-sp13_S_contig600:15549..157411681463835.2710319-CDS-Ecto-sp13_S_contig600:15549..15741Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig600 15550..15741 -
1681463835.2801423-CDS-Ecto-sp13_S_contig600:17274..175051681463835.2801423-CDS-Ecto-sp13_S_contig600:17274..17505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig600 17275..17505 -
1681463835.2885787-CDS-Ecto-sp13_S_contig600:21971..223161681463835.2885787-CDS-Ecto-sp13_S_contig600:21971..22316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig600 21972..22316 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig600.16592.1prot_Ecto-sp13_S_contig600.16592.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig600 8563..22316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig600.16592.1

>prot_Ecto-sp13_S_contig600.16592.1 ID=prot_Ecto-sp13_S_contig600.16592.1|Name=mRNA_Ecto-sp13_S_contig600.16592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=509bp
AGEEARGQTHTHLPGSHVLQLFHGHHPPLLCAGWLLLALVMSGLEPFIPL
AWGALRLTASLVTAGFKKLVGVEHESDALVEWSGDVVLKARDESRRTQQR
LSGSAARAVAQHREETQRGLATLGGDLRSGLGAIGTAVMAEDTGIRADVR
EVKRDLASVRESVEDCRAENIQFFVSFTAGLEAAQQGIEVMRSAPLEEAE
MSLKNFEASQGNVRFLEAAHGKAMTALVQGHTLDVKLSATIIAISAGYVH
VSKASSIESPCDAKFFTVNGTLANVVRHFAPTWSDPSRASTADGKKTVSF
LLNIVSCVCALPPESVPVLSNLDKRLLPICGALCSAEPELRRLYPKVAGT
AVAAMLKQKTIRELLHLADMVGVDVDSCTSKEAMVQALLSSGKGLIPSPA
PTAQAVVQTNNVFQTGPPMTASAPQQDAPTDRSALMELFDATRGSSWKNN
TGWATSAPLQQWHGVTVDGTGRVITLDLGENNLSGPIPSALGGLTALQKL
YLHVNKLSG
back to top

mRNA from alignment at Ecto-sp13_S_contig600:8563..22316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig600.16592.1 ID=mRNA_Ecto-sp13_S_contig600.16592.1|Name=mRNA_Ecto-sp13_S_contig600.16592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=13754bp|location=Sequence derived from alignment at Ecto-sp13_S_contig600:8563..22316- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCGAGGAGGCGAGGGGGCAGACACACACCCACCTGCCCGGTTCGCA
CGTGCTGCAGCTATTTCACGGTCACCATCCCCCTCTGCTGTGCGCCGGCT
GGCTGCTGCTCGCTTTGGTCATGTCAGGCCTTGAGCCTTTTATCCCGCTT
GCTTGGGGCGCCCTGAGGTTGACCGCGAGCCTCGTCACGGCCGGGTTCAA
GAAGCTAGTTGGTGTTGAGCACGAGAGCGACGCGCTTGTGGAATGGTCAG
GGGATGTCGTCCTGAAGGCTCGGGACGAATCGCGCCGAACCCAACAGAGA
CTTTCCGGTTCTGCAGCAAGAGCTGTGGCGCAGCACAGAGAAGAGGTGCG
TGCTCCTCGTCGTCGAGTGTACCGTGCTTGGCGTATTTGTTTGTCTCGAC
TGCTGTTGTGGTGGGCGAAAAAGTTGCGAAACATACATATTCATAAATGA
AAACTCCGAGACTCTTGTGCCTTGAATGGCATGAGGGGCCAATATACCTA
CCCCTTTGGTGTTGGGTTTCGCCCTTTCCCGACAGAAGAGCACCAAGTAC
CAGCTAATCCAGTGGTGTGAGCTCTCATGAAAGTTGGAAAAAAGCCCCAA
TTATTTTACCTCTAGCAGTTCTCTCGCTGTCAGTTTTTCACGATTTTTCG
CCTCTATCCAGTACACCATGGAATGATTTTTTTCTGGTGTACTACACAGA
AGGGTAAAGGGAGAGATATCCGTGTTCATCGGGCTGCAAGCCCTCGTGCG
TGCCCTACTTTGTTCCTGCGTTCTGCTTTGTGTGTGTTCCAGGTCATCCA
CGGCGTGCTATTGATTTTGCCGCGTGTTCTAAATTCCACATTCTTGTAGG
TATGTTCTGGCGATTTCCTTCCGGAGCGATTGTACGAAGCCACATTTAAT
GCGCACTTTGGAAGAACGCAACGGGCGGGTCCTTTGCTCGGTTGATGGGT
AGGCCGGGTGTTAAAGAAACGAACCGCCACCAAAAGTCAAACGAACTAAA
AACCCCAGGAAAATGTAAAGGCCATCTTGCGCATAGCGCGCCTTTGTTAC
GATTGGTACTATGTCAAGTGGTGTGGTATACTGGTGTAATCGTCGGTGGT
ATGCACTCGGTCCATTCCCTTAAACAGCGAAACTTGTTGCTGGAACAGCT
GCCGGGCGCGGTGGCCCCAAACTTTGGCAGAGAATGGTTCCAGGTCGTCG
AACCCATGCACATGCGTAGGCGATGTTCGGTGCGGTTGTTTTTTCATCGT
GTACGTACATTTGTACTGCAGCAGAGTTCGTGTGTACACTTTGAAGGAAA
AGAGTGCTGCACTCTCTCTTTTCGCGGCAACGATCGAACGCAAAAACAGC
GGGAGGGGTGGGAAAGGAGGCGTCAGGGAGAGAAACCCTTGTGTGATTAT
GATTACAGATTGGAGCTCCTACCCGGCAGAAATACACAACGAACGAGATG
AACAATAAAATCACGAAACGAACTTGACGTCCCGGGCAGAGAAAAGGATC
CGTGGTCGTTTTCACAATCATGCGAGCCCGACCACGGGGCAGAAAAAAGG
GAGTTCGTGGGGTCAGGATGCATGCGGCAGTGATGTTTGCTAATGGTTCC
TTCTCAGGGGCACGCAGGAGGCTCGTCGGTACATTACCGCGTGTGCCCGG
GGACCGCCAGATGTCCTTGGCACGTGCAATCGGCCGCCACCACTGGCTCC
ATTTCGCGGGGAGGCACTCTGAACCAAACACGCCTTCGCGGAAGGCTTTG
ATTCCTGCGCAACGCTCCCACGTCTCAATCGACCAATGAGCAACACGGTA
CAAAAACACGGGAGCGAGTGATCAACTCCAAAGGGTTACAGCCGCAGGAT
CCGCGGTGAAGACGCCGCTAGCCTAGAAGCATACATCACGAACACGCGAA
AAGTCACGGGGAGAACAACAAGATACCCCTCACACGACGCAATTTCTGCA
GTTTGTACGGAACACCGGCACCGGTTGAGATGCATCGATCCAAGGGTGAT
TACATTGCCCATGTCCTCTTGCGCCGCCCCCAGGAGGCATGCCACCTAAC
TCCCGAAGGAAGCCCTGTAAACCTTGTATTCAGTACGGGCCCGCGAATAA
GATTCTGTTCAGAAAACAAGGCTCAACATTTAACGAAAAGTTAAGAAAAA
AGGACTACTGTAGAAAACACAGCTTAACCTCGGCCACAACATAAGAAACG
TCTAAATCCAGAAACATGACCTTGAGATACCCCCAACGCATAAGAAACGG
AAGTTTTGCTGGGGGAGCCTTTATACGCTCCGTTAAGAAACGTCCCACAA
CAGCTCCTTCGGTGCTCCAACCCCCCCGTACCTGAACAACACTTTTTTTT
TTTCGAGTGATTATCGTCACCCCCCCCCCCCCCCTCCTCCTCCCTCCCAA
CCACCCGCCCCACCTGCACCCCTTCCANNNNNNNNNNAACATCCAACACC
CCGCGCCCCCCCCCCCCACCCACACCCACACTTTTTTTTTTTCGAGGGTG
TACTCTGCCCCCCCCCCCCCCCGCCTCCTCGCTAGCTACTCCGCGGCCTC
CGCGGGCTGCTTCAACCAATGCTGCGTGAATGAAAGTGAATATAGCCAGA
AAATCGAACATGGGAAGAAATAAAAGACTCAGGAGGATGCGACAGTCCAG
AGCAAAAAGAAATGCCTTTTGAGAAAATGGACGAGCTCGGCTGGTACTTC
CACCCAAAGCAAGAGATGAAAGCCTCGACCCGATTTTGACGTTTGTCATA
TCCGGGCCCGTACTGTACATCGACAACGACAAAGAAAATCGAACTGAGAT
TGATATCCCAAACATCGGGCTTATCCCACGTGCTTACGCTTAGAAGCTGA
GCGAAGAGTTTGTAATGCTAGTTACAGGTTGCAATAATTGTATAAACTTA
TTCCGGCACGTCCATGCTGAGTACGGCGGAATAGTGTTTTGCGCTTGGGT
TCTCCACGATTGATGACCAGGCGGACGTGACCACCCTCCACGCACGTTCA
ATATTGATCAACTTGAGACTCTTGTAGAGCCCCTCGGCAATCCGATAGAC
AACAAGTGTCGGTATTATCTGTATGCTCGTCTCAGGGCCGAGAAAGGCAG
GTCACGGCAGAAAACGTGGATGGTACTGCAGTAGGAGCTTTGTGGCTCAC
ATCCCCGCCATCGCAAGTATGCATGCACTCCTGTTCTCTGTCTCGTTGAC
TCTGTCCATCTAGTCGTATGTACAAGATTGTTTTTGGAGCCCGGATGTTT
CTTGTTCTTGTCCCCTGTTCACTTTCCCGGGAGTTGTCTCTTCCTCTGCA
TGTATAATCGCGTTGCCCGTTGTGATTTAAGAATCATAGAATGTCTCGAG
CTGGAAGGCTTGTACCCGGCATTTGGAGATTCTCGGGAAGGTGTTGACAT
CAATGTGTTTGTTCCAGTCGAGGTATTTCCCTGGCAAATAGTCGTTTCTG
GTGTTTTTCTCTCGTCGCTTTTTCTACGGTTTTCTGGACCATTGTTCGTA
CTCGGTACTCGATTTTTTACACGGTGCCGACCCCCGCACAAGATAAAACC
TCGTACAAAGTTGGGCCTTAGATTTTGAAAGAATGAGAAAAAGCCCGTAA
GAAATTGTGCTCATCTGATTGCCAGCAACAACGACTGGAGAAAACAGAAA
CCGCACGCTACCAACCTCCCAATGACAAGAAAGGTGAACGGATGTCGTGA
TAAGCCATGGAAAAAAAGAAATACCTCTGACCCTTAGCACAGCTCGACAG
CGATCATGACCTCGGCCCAATAAGGACGACGTCATCGCGATGCAGCATCC
GGACAGTGTTCGCCTTAAGGATTCCCCTCCAGCGGAAGTAGGCCGCGGGT
TGACTAAGCGTATTGTCTGCGCTTGAGTTAGGTGTGGTTTGGGATGTTTC
TGGGGTAGGTCAATCGGGCGACGCCCGTATAAACCACTTGTACGATTACC
GCGTGGTATTGACTTATATCCAAAGCACCATCAACTTGAAGGGCGCATTT
TTACATCGTAGACGAGGCTGACGCATCCGTGGGTGCACGGACTTTGATGG
AGCAGATCGACGGTTGCGACGAGTCGGCGGCACGCCTGCAGGGTAACACG
GGTAAGATAGCAACCAGGAATGAATGAAGATACACAAGTTCGGGACCACT
TTGACGATTGAGTTTCCAACGTGAACGAATTTCTCTTTTCCACCCTCCCG
GACGATGACTTAGTGCTTGCAGAGGTTCTTGTAGAAGTCCAAAAGTACCG
GTAGACATGCACACGCAACAGGATTTGATGCAAGTCTCAAGTTCAAAGGA
GTCGATGCACAGGTTGTGCATCTTTTTGGATTGACATTTTAAGAGAGGAG
ATACAAGAAAAGCAGCTCACATCGCTATGGAGCGTTGAGCCTCGCCCACA
ATAGGTGCTTCTTACGAGGGGGACTACAATGTACTGTTGGCTGTTCTTCC
TTGCGTGTGTCGTGGTCTCAAGTGACAAATGAACACATGGTTTCTTGTCA
GCTGGACCTACTCTACGCTTGCTTTGCGGCCGATCTCTCAACCGCCGATG
AACGGGAAGCATATACTTCTGTTTACTGCGTGTGTTGTAGATATCCTACA
CTCTTTCGCGTTGCATGCAGATACACGATCATGTTGAGAATCGCACTGGT
TGTCGCTCCCGACGGAACACAATTGTTTGCAAGCAGTGCCTACCTCATGG
AGCGACCCGAATGGAAGCGCGAGAAGGAAGGTGTTGTTTTCCACCTTAGC
ACTTCAGCCCTAACCCGACCCTTTGTACTCCTGTATTTTCTACCTCATTT
TCGCGCCATAGACGCAACGCGGTCTGGCAACCTTGGGCGGCGACCTCCGT
TCTGGTCTGGGCGCCATCGGCACGGCCGTCATGGCGGAGGACACCGGAAT
TCGTGCCGACGTCCGCGAGGTCAAGCGTGACTTAGCGAGCGTGCGTGAGA
GCGTTGAAGACTGCCGTGCGGAGAACATTCAGTTCTTCGTAAGTTTTACG
GCTGGCTTGGAAGCTGCTCAACAGGGCATCGAAGTAATGAGGGTAGGTTT
CCCCCGTGCTGCTCTGCGTACGACACTCCACGTGCAGGCGGGGTTATGTG
ATCTGTGCGCACGCTAAATATTGAGCTGTTTCACGCGAAAGAGGTCGAAT
GAAAGCCGTTGACGCGGCACAGCCATTTGTTTTGCCTCATGCGTACGCAT
ACATGACCACGAACCCGATGTTTTCTACAAGCTTTTTACGCCTCAAGGTT
TCAGCTACCTCGAGGTGTATGTTATTCCTCTGAGGCTGCACTAAGGCTCG
TGCCACACCTCAAACAATTTTGTTTGGCATTTGACGAGGGCAGCTCGCTT
GTTTTTGTGTCTCCTTAAATGCGACAGATGACACTGATATATCGAAGTCA
CTGAGATATCGAAGTCATTGACATATCGAAGTCACTGACATATCCAAGTG
GTTGCTGCCAACCACAATCCATTCACACATTTACCTTTTCGAAGTCTCTC
AGTGCGGGGGAAACAGTTGTGCACCAACATGACGAGAAGCCCCTTTGCAA
CAGCTCTTTTTGGTCGCTTTTATGCTGAACACTGTTCCTGCACACCATTA
CTTGTAGTGGACGCGTAGAGATCCGTGAGGTGCATGCCCCCCCGATAAAC
ACATTTGGGATGGCCTTTGATATGAATCCTTGCGTAGGGGTCATGGGATG
GTCCCCGCTCTTGCCAAAAAGCGGGGTAATCTCTAGCACACCGAGATTTT
GACCCTCTGTAAATTTGCGAACGAACGATCTAAGACGAAGTCTGCTAACA
CCGGGACGATAGGTTGGGGCCCGGTGGGCCACTTTGGTGCAATTGCGGCT
GGTTGACTGGCAGACGTGGCAGACGCTCTAGTGGCGGGATGCGTTACGTC
TGTTCGTCCTCCGTGCGATGTTTTCCGCCCCACCCATCTCAAACTGAGCA
AACCCTTGGATTTTTTGTTCGTTTCTCCCATGGGGCGGCCGAACGGCCAA
AGTACAGCCGTGTTTGTTTATTCCGGCTTTCGTCAGCTTTGTTGGGGCAT
GCGGTAGATAGTCGCACTTTTGTCCACTCGAAAAGGCCGCAGGACACCGG
CAATATGTTCTTTACCCTAGTGTAAAGCTCAAATCAAGTCGATAGTTCTG
GTGCCCGATTGCCCCGGTGTTGTTGCTGTATTTGTTGTCTCACGCCCACT
GTTCAGTCAGTCAATACCACCCCCACCCACAAACGTCGATCACTGCACAA
GCAGCACGTACATCTCAGCGGCACAGACATGGAAAGTTATTCCCAGCGTT
AGCCAACACTCAGAGACGTTGAACTTGCTTTTCTCCTGTTTCCTCCTGAA
ATGTTCCCCGTAGACATAGGATGGCCTTGTCATTGCATGTTTCCGTCATG
CAGAGGGCTCCCACAAGTGTGCCTTTCGTTGCTGTTCTCACCCCTCCCCA
TTATTAGCCGCCCGAAGAACTTGTCGTTGCTATCGTAGTGGTGTCAGAGG
GTACGGCAGTACGACGCAGCCTGCAGGCGCTTACCTCGGATTATTCCCAC
GCCGCGGGCATCCTGTCAAACGCAGAGTGCGCCCCTAGAAGAGGCGGAGA
TGTCCCTCAAGAACTTCGAAGCCAGCCAGGGCAATGTCCGGTTCCTGGAG
GCAGCGCACGGCAAAGCGATGACAGCTTTGGTACAGGGCCATACGCTGGA
TGTGAAGCTAAGCGCAACCATCATCGCCATATCAGCGGGTTACGTGCACG
TTAGCAAGGCGAGTAGCGTTCCTCATCCATCGCCAATTCCCGTACTTCTT
TCTATGAACAAAAATATCCGAGATGATGGTGAGAGAGAATGAGCATGTTG
ACACTTATCGCATTCTTGACCACCCGGCGCCAATTGAGCAATGCCTAGAG
TGGCAAGAGTTGCGAGACACTTCTGTTCGTCGAGGCTCGTGAACATCTCG
CTCTTTCTTTTGGTGCGCTTTGTGAATTCCTTGTTGAGCGACTCCTCTCT
CCCACCCTCTTACCGATGAGTATTGCTCTCATGCCGTCTGCCTGTTTTCG
CCAGATCGAATCGCCTTGTGACGCTAAGTTCTTTACGGTGAACGGAACGC
TCGCGAATGTCGTACGGCATTTCGCGCCTACATGGAGCGACCCTTCCCGC
GCTTCAACGGCCGACGGGAAGAAGACAGTGTCGTTTCTCCTCAACATTGT
TTCTTGTGTGTGTGCACTTCCGCCGGAGAGTGTACCGGTTCTGTCGAACC
TGGACAAGCGGCTTCTACCAATCTGTGGTGCCCTTTGCTCGGCCGAACCA
GAGCTGCGCCGGTTGTATCCAAAGGTGGCGGGAACTGCGGTGGCGGCAAT
GCTAAAGCAAAAGACCATAAGAGAGCTTTTGCATTTGGCCGACATGGTGG
GTGTTGATGTCGACTCCTGTACCAGCAAAGAGGCCATGGTGCAAGCTCTG
CTATCTTCCGGCAAAGGACTCATTCCTAGCCCAGCACCAACGGCGCAGGC
GGTCGTTCAGACCAACAACGTCTTCCAGACCGGCCCGCCCATGACTGCGT
CTGCCCCACAGCAGGACGCCCCAACGGACCGCAGTGCTCTCATGGAGTTG
TTCGATGCCACGAGGGGCTCGTCGTGGAAGAACAACACGGGTTGGGCAAC
ATCTGCTCCTCTCCAACAATGGCACGGAGTAACTGTGGATGGTACAGGCC
GGGTAATTACTCTAGATCTCGGCGAGAACAATCTTTCAGGTGCGTCCAAC
TCTTCGGTCGACAGTCGGCCTCAGTCCTTTCTCACGAAGGTAGTCTTCTT
GCGGAATTCCTTCCTGCTGCGAAACACTTCCGTGGTGAAGGGATGAGGTG
AAGAAAGGGTCGCCTCAGTGACGCAGACCATCGCCGGACGCGTTTGGATG
GTGATATCAGATGCTATGTAGATTCAGCGTTCGAGGTCATTGTCCAGACT
TCCAATGTAAAGAGGTTCGTGAGCTCAAGAGTGGCGTTAAACTCGAAGGC
ATGATGTAGCGTTGTTAGTAAACTTGATCAACTTCTCAAGTCGCGAGGGA
AGGGATTGCTGTACCCTTCTCGCGATAAAAATATCTCAGGCAGGAACCGC
AGGAGGCTAACCACCACCCCCCTCCTATGTGACCCCGATTGGGTTGTCTA
GCTGGTAGAAGTGGAGGATAGGGGCCAGAGGGGCAGACGACAGAGTTCCA
ATGATCGGAGAAAAAAGGAAAAAAAAACTAAGAAGTCTTGGACACGTGTA
TTGTAGCCAAGGGGGTCCGACATATGTTCAGTCGAGTGTAAATTCAATAC
ATGTTCCTAATCAAGCAGTTGGGTGGATTCACTTTCTATAGAAGGCTCCG
TCGTGGAGAGTGAGATCCAGCCCGCATAATGCAGGCAAGCCAGACAAAAG
TGCAATGAAATCCACGGGATACGCAAGTATTTGCGTTGTTTTCCAGAACC
ACGAAGCCCACAGCTGTATACTCCTGTAATGTTTTGAGGATTCCTGATGA
TGGATGCGAGAGAGTCAGTAAAAAGCAGTTCGTAACAGCAGCATCGTAGC
GTGTACTGGTGCTTCGCGTTCTCTATACAGACTTCGACTTGCATAAGGCT
GTGACAACGTCTAACTGAACCTTTAAGACATCGACCCAGGACCTTCACCA
TCCGTCCACAAGACAAGGTCTTTGTTCACGGTCGAGAGGGCCGAACGTGG
GTGACTTGGTTCGATTTCCGAATATGTCGAACGCATCAAGGGTTGCAAGG
GAATGACCCACGGTTATTGTTTTGCCGATCGCACGTGCGCCGATCTCACC
ACCCGGTATTTCCTCAGGGGTCTCCATTATGAGAATGCCCTGTGAAAACA
TGCACGTATGCAAGTACATACGACCATTATCGATCGTTGCCTATCACGAG
CATCAGATCAAGTGTCCGCCTTACAAGACCGAGGTGGTCCATGGTAAGGG
CATAGACCTTGAACCTGCGGGGGGTTTCGGCGCCAAATGCTCAAGTTGTT
TGGTAAATCGCCCTTCAACCCTAACCTATCTCATGAACTACAACATTTTT
GACAATTTCATTTAGCCTACAGTCGGGAGGTTCCACTTGCTGAGGCTGTG
ACCCCGTGAAGCAATCGTTCAGAGTCAAGGAGTGCCGCTCCAGCAGGAAG
TGCGCCCTCTTCTGGTAAATGTATCTCAACACCAATGTTTTTGTGTGTAA
ACGCGTAGGTGCATGCCTTTCTTTGTCATCTCGTCGCAAACTGTTGGTGT
AAACACTTCTATCACACGTCAAAATCGTCACACAGTCGCACCCTACCCTT
CGGCCATCTACTCACTCGACATAATACGCAAGAAGTACTTTTCCGAGTCC
ACAGAGAACGCGATAATTACTACTCCTAGTTGAAATGAAGGCGCATACAA
TGTGGCGCGACGGAAATTGTACGACTTCTGCACCATACAACAGATTTCCA
GCAGGAGCATGAACCCGAAAGTCTGGACTCACCGGATATCTACAATGTAG
CGAACTCTACTATCGTACGATTGGTTTTTCTGAGGTTGCTCAAGGGTTTA
CACGACCATCATGCTAACGTAAAGACCAAACTGACAAAACAACACGTGAG
ATGTTTTGCCGGGGGAGCAAACTCATGTACCGACGGCCGACGATCGTCTT
AGTGTCGATCCGCGAACTCCTCACTCCCGCGCTACGAAGCGCTTGTTTGT
CAAAATAGCTGCAAGGAGTACCAACGCGTGTGCCTCCCACAGCTTTTTTC
GCTGCGATGACCATACGACGGCTTGGATGAGTGCAAGGATTTGGTGTCCA
GACGAATCAGGTGCTACCATGGAGCTAAGGGTCGGTTTAGTATAGTAGAG
TATTTCTAGTAGAGTATCGAGAATCCGTACTAACAGTTTAGTATAGTAGC
GTATGGGAGAGGTGAATACTCTACTCACCTGAGTAGAGTACAGAAACCCT
GTACTAAACTCAACAGTATGTTTAGTACAGTATGAAGAGCTGTACTAAAC
ACAAGAGTATGTTTAGTACAGTATCGAGAATCGGTACTAACGTTAGTATG
AGTAGAGTTTGAAAAGCCGTACTCAACGTATGTTTAGTAGAGTATGAAGA
GCCGTACTAAAATCATTTTTGGTACAGTGTTGGAAGCCCTACTAAACGCC
ACAGTATGTTTAGTACAGTATGAGAAGCTGTACTGAAGTGTTGGTATTTC
TCTACTGGGCGGTTTGGGCCAAATACTTACAAAAATACTTGAAAATACCA
ATAGGAGATACTATACTAAACCGACCCTTGCATGGAGCACATTATTTTTG
GCCGGAGGCCCTGAGTCACAGAAATAAACAGGGTTGCCGCTGCTCTTGCT
ACTTTAGTTGTGGTGCATGTTTCTCTCCTGAAACGCGAGTTCCAACCTCT
GTTACCCCATGCTCGACACTCTTCAAGGTCACGAAACAACTGTCGTTGAG
AGTACACCCACAGCGAGGAACAACGAACGTAGAGAACAAGTACCGCACGT
CGAAACTCTGGTGAAGATTTGTTGAAAAATTCCATCTCTAGTTAGATTTA
TCAGAGTGGAAGGCAACTGAAACTCGGTAGACTCAGCGGCGAGCTTCGAT
GCAGTCGGAGCTTCACTGCATGGAATGTGGAAACGTTCGCACCCATCGAG
TACCAACCCGGCGAGTGTTCGTTGATATGAGGTCGGGCATCTACGGCATC
GTGTTTGTCTTACTTGTACGCCCGTGTTTGGGCCTTACTTGCTTGGATTG
GCGTTTTACAACTGTCGGCACATGTACTGCTGTACCTCCGGTGTTCGGAT
GCCCCAAGCGTCGTCATGTCCGCCTTCGTTCCGTGGGTGGCATTGTCAAG
CGGGCATTCGATCAGAACAAGCGTTGATTGATCCGCTCTTGCTCGTGCAT
CAGTATCTCCGATTCAGTATCCGCAGCTGCACAAATCCGTCACCACCGAA
CGTCCTTTGGGATGGAGAACATGAAAAGCTATAAAGCCAGGCGTCAGACC
AATCTGCCGAAACTAAAGCAGCCCAACATGTTGTGTAAGCCCGTCAACTG
CAGAGTTTGACGTTTACTGCCAAGCTTGTACCTTGCAAGAAACAGGTTTG
GTCTTGTCTTGATGGTAGATAAGTACTCAGAACAGGACCTCGGGCGGGCA
CCTCCTTGCCCGAGCAGAGTGTTTTTGTTGGGATAGTTGGAAACGGTTCA
ATAGGCCCCGCCACTGGAGGTTGTTACTCCAGTAAACCAGTTGCTGGAGG
TGTCTGGTTCACTTTGATGGGGATAATGCATAGACTAAGTCGTGCCTGAC
GCACATATGCTGTCAGGACGGTTGACCGCTTTGCTCTACCACTCGCTACC
GGTGACATCTGTTCGAAGGGCCGTCAGTGTGTTTTCACGCAGTTGTCGAA
GCTGGGTCCGGAAAGACAAAAATACCGGAGAAGAGAACAACGACATGCTG
TGTTTCTCTTCGTTTTTTATCTCACCCCGCTTCCGAAAACCTGAAAGTCA
CATTCCATGCGTAGGTTATGTGAAATGAAGAACGTGCAAGTTTCGTCCGG
CACTATGTTTATATATTGTCGTGGGCACCCTGTAAACCACACTTACTGGG
AACCGTGCAAGAAAGTGCACTCCGGGTGCAAACATGGTGAACTTAGTCAT
CGGCACAATCAGATTTCATTCTCCATGGTGTCATCGCGTAAGCAGGTCAG
AAAGCAGGAGGTTGATTCACCCCCCCACGGTCAAATCGCCCTCGGAGAAA
GTCGACCGTCTGGTGATTGTCGAAATGTCCACATCGTAGTGCTTGACGTG
ACATGACTTGCCGATATTGAGTGGGGGCTTCTCTTCGCTGTGACCGTGAA
GTTCGTCTAGACATGCAATACCTGCTACACTGAAATTTGCTGTATAACAC
GGTTGTTGACTGATCACCCCCTAAACGAAGCTGAGTTCATATTCCCGGGT
TGCATTTAACCGCGAATGACGTGCGTCTGGGTGTTTTTAGGAAGAAATCC
ATACGCGCTTCGGACTTGGGCGACCTCATTCGTCTGAAGGTCGGAGAAGC
CCGTCGTTGTGAGATCGCGTTTGGGCCTGGTTGGAGTTGAACCCCGGAAG
AGATAATTCGAGGAGGGTGTGAAAGATCGCTTCTCAGACCCTTTGGGAAT
TGACCCCGCAGTGTGGACAAAAGCAGACATTCTGAGCAGCGGCACGAAAG
GGGAAACACTGGGGGACGCCGCTAAGTGTGCTCAAGGACGTGTTCCCTCA
CCCCGTTTCAGGTGTACCTTCGAGCTGAGTGTACGTGGCTTGACTGACAA
CGTGTTGGTCGATAATGGTCAAGGTCTTGCCGGTTCGAAGGATCGCGTTG
GATGAGCGGGTCCATTCCACACCCCTCATTGCTACCCCTGCGCTGGCTAT
GACTGGAGGGTGTTCGTACGTTTCGGTGATCCCAAGTATATCATTGGCGC
ATACCAATCTTTCGGACTCTATTATCCACCCCCAACAACCGCCACACGTC
AAACGAACAGGTGTATGTTCTACAGCAACAAACAAGCGCAGACACTGCTG
GTCAACTTTTAATGTTGATATTCGCTGAAACATTTGAGCGGGCAGGTGCA
GCCAGAATCGACGTGTCATGCTGAATACCCTTCTCTTGGGTCTGCTCTAG
AAAACATTGTGTCACCGGACCACGCTGTTGCTACACCAAATGTATCAGGC
GTGGGAATCCCTCGTGCTGCCCGTGTGTTCCTCGATGATTCAACCACGTG
GGTCCGGCTCTGTTCCTCTTGGTATGCATTCTGAAAAACACTTGCTACAT
ACATGTTTGAGAAGTCACCCAACGTCCACAACGGAAGAACTTCGTGATCT
TCCGTGACAAGTACTGTCACTGGCGGTGCTGGGACTGTCCTCGCGTAGAA
CAAGAAACTGTATTGCGGTGAAAAGCCGAGTACCCGAAAGTGTCTTCACA
TCAAGTCAACAAGTCTGTTTAGAAGGATATTCCCAAAACGTTGCACGCTT
GAGCAAAACAGGTTCGTGATTGGTAACCATTACCGTGAGACTTTTTCCTT
TCTCTGCGTGCAGGAATGGATTGGAAGAAAAAAGCACCGAGTACATGTGC
CGTCACGGGCATGACGTACGATAATCGAAGTGGGGTGGTTTTTCGTCGGC
TACCGTAATGTTGCCTGTCGGATGCATGGGAGGGAGTGACCGACGGTCAT
GATCATGAAATGCTGAGGAGGGTGCTCTGGCGGTTAAGGTGGCCACTTTC
ACAACATGGACGAAATGTTTTCATGGTCACACCCTTGTGTTAAGACAATA
CCTGACTATGTGAGCCCAACTCCCTTAATTATCAGCTCAACCGAGGTTCA
GTGTACCATTTGAACGATCTTCGCGGCACGGCGCGACCCACCAATCACCT
TCTATGTTTCTGTGTTTCAACTGTCATGTCCCTGCAATGCTAACGCGTAT
CGAAGGGCTTACCGTGCGATTGGCAGGTTGGTTTCGCTCGTCTTCGCAGC
GTTGCCGTGCGATGGGTCGATATTGTCCGTGTCGCCTACTCGAATGGAAC
CATGTTTCCCATGCACGTCTGTATTGGGCACCAGTACGATGAGCGTAGAC
GCGTGGCATGTTGCATACTTTGTTCACCCTATCATGGGCTAATCCGTGTT
TCGTCGCATGCTGTGGGCGTCGTGCTTCAGGACCGATTCCGTCTGCTCTG
GGAGGACTGACGGCTCTGCAGAAGCTGTACCTGCACGTGAACAAACTGAG
CGGT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig600:8563..22316-

>mRNA_Ecto-sp13_S_contig600.16592.1 ID=mRNA_Ecto-sp13_S_contig600.16592.1|Name=mRNA_Ecto-sp13_S_contig600.16592.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1527bp|location=Sequence derived from alignment at Ecto-sp13_S_contig600:8563..22316- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGCGAGGAGGCGAGGGGGCAGACACACACCCACCTGCCCGGTTCGCA
CGTGCTGCAGCTATTTCACGGTCACCATCCCCCTCTGCTGTGCGCCGGCT
GGCTGCTGCTCGCTTTGGTCATGTCAGGCCTTGAGCCTTTTATCCCGCTT
GCTTGGGGCGCCCTGAGGTTGACCGCGAGCCTCGTCACGGCCGGGTTCAA
GAAGCTAGTTGGTGTTGAGCACGAGAGCGACGCGCTTGTGGAATGGTCAG
GGGATGTCGTCCTGAAGGCTCGGGACGAATCGCGCCGAACCCAACAGAGA
CTTTCCGGTTCTGCAGCAAGAGCTGTGGCGCAGCACAGAGAAGAGACGCA
ACGCGGTCTGGCAACCTTGGGCGGCGACCTCCGTTCTGGTCTGGGCGCCA
TCGGCACGGCCGTCATGGCGGAGGACACCGGAATTCGTGCCGACGTCCGC
GAGGTCAAGCGTGACTTAGCGAGCGTGCGTGAGAGCGTTGAAGACTGCCG
TGCGGAGAACATTCAGTTCTTCGTAAGTTTTACGGCTGGCTTGGAAGCTG
CTCAACAGGGCATCGAAGTAATGAGGAGTGCGCCCCTAGAAGAGGCGGAG
ATGTCCCTCAAGAACTTCGAAGCCAGCCAGGGCAATGTCCGGTTCCTGGA
GGCAGCGCACGGCAAAGCGATGACAGCTTTGGTACAGGGCCATACGCTGG
ATGTGAAGCTAAGCGCAACCATCATCGCCATATCAGCGGGTTACGTGCAC
GTTAGCAAGGCGAGTAGCATCGAATCGCCTTGTGACGCTAAGTTCTTTAC
GGTGAACGGAACGCTCGCGAATGTCGTACGGCATTTCGCGCCTACATGGA
GCGACCCTTCCCGCGCTTCAACGGCCGACGGGAAGAAGACAGTGTCGTTT
CTCCTCAACATTGTTTCTTGTGTGTGTGCACTTCCGCCGGAGAGTGTACC
GGTTCTGTCGAACCTGGACAAGCGGCTTCTACCAATCTGTGGTGCCCTTT
GCTCGGCCGAACCAGAGCTGCGCCGGTTGTATCCAAAGGTGGCGGGAACT
GCGGTGGCGGCAATGCTAAAGCAAAAGACCATAAGAGAGCTTTTGCATTT
GGCCGACATGGTGGGTGTTGATGTCGACTCCTGTACCAGCAAAGAGGCCA
TGGTGCAAGCTCTGCTATCTTCCGGCAAAGGACTCATTCCTAGCCCAGCA
CCAACGGCGCAGGCGGTCGTTCAGACCAACAACGTCTTCCAGACCGGCCC
GCCCATGACTGCGTCTGCCCCACAGCAGGACGCCCCAACGGACCGCAGTG
CTCTCATGGAGTTGTTCGATGCCACGAGGGGCTCGTCGTGGAAGAACAAC
ACGGGTTGGGCAACATCTGCTCCTCTCCAACAATGGCACGGAGTAACTGT
GGATGGTACAGGCCGGGTAATTACTCTAGATCTCGGCGAGAACAATCTTT
CAGGACCGATTCCGTCTGCTCTGGGAGGACTGACGGCTCTGCAGAAGCTG
TACCTGCACGTGAACAAACTGAGCGGT
back to top