mRNA_Ecto-sp13_S_contig60.16588.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60.16588.1
Unique NamemRNA_Ecto-sp13_S_contig60.16588.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig60.16588.1 vs. uniprot
Match: A0A6H5KQF8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQF8_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 3.140e-16
Identity = 37/64 (57.81%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 MATTSSMLWYLCPHPHVPYVSVPPGVDHITSFPAFYRCSFRSLSCFSDQNRSVVTPQDSENLSR 192
            MA TSSMLWY+ PHP +P VSVPPGVDHITS P               +NRS+V+PQD+ NLSR
Sbjct:    1 MAITSSMLWYVRPHPQIPRVSVPPGVDHITSLPG-------------QENRSIVSPQDNGNLSR 51
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BLAST of mRNA_Ecto-sp13_S_contig60.16588.1 vs. uniprot
Match: D8LL25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL25_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 7.400e-15
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 MATTSSMLWYLCPHPHVPYVSVPPGVDHITSFPAFYRCSFRSLSCFSDQNRSVVTPQDSENLSR 192
            M  TSSMLWYLCPH  +P V VPPGVDH+   P              ++NRSVVTPQD E+LSR
Sbjct:    1 MTITSSMLWYLCPHLQIPRVIVPPGVDHLARLPG-------------EENRSVVTPQDKESLSR 51
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60.16588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQF8_9PHAE3.140e-1657.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL25_ECTSI7.400e-1554.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60contigEcto-sp13_S_contig60:25447..26795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size195
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_000850.1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463834.874576-CDS-Ecto-sp13_S_contig60:25446..255411681463834.874576-CDS-Ecto-sp13_S_contig60:25446..25541Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60 25447..25541 -
1681463834.8843515-CDS-Ecto-sp13_S_contig60:26695..267951681463834.8843515-CDS-Ecto-sp13_S_contig60:26695..26795Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60 26696..26795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60.16588.1prot_Ecto-sp13_S_contig60.16588.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60 25447..26795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60.16588.1

>prot_Ecto-sp13_S_contig60.16588.1 ID=prot_Ecto-sp13_S_contig60.16588.1|Name=mRNA_Ecto-sp13_S_contig60.16588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
MATTSSMLWYLCPHPHVPYVSVPPGVDHITSFPAFYRCSFRSLSCFSDQN
RSVVTPQDSENLSR*
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mRNA from alignment at Ecto-sp13_S_contig60:25447..26795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60.16588.1 ID=mRNA_Ecto-sp13_S_contig60.16588.1|Name=mRNA_Ecto-sp13_S_contig60.16588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:25447..26795- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCACGTCATCGATGCTGTGGTACCTCTGCCCACATCCACATGT
CCCATACGTCAGTGTTCCGCCCGGTGTTGACCATATAACCAGTTTTCCTG
GTTAAGAGGTGAGCTGCTCTCGAAATGCGGACGAGATTTCAGACCTAATG
ACACATTTAGCCGAGTGCAACTTGCACACTTTGAGAGCGCGGGCGTCCGT
GATGCCTAAAGCACTGGGTACTGAATCAAAAGCCTTCTCTTGGGAAGGCT
CTCTGCTGATATCGGCGATTCCAACGCCTTGTTTGCTGAGACGCACCGTG
ACTCTCTCGTGCACCTGTTTTTCTCACCTCTAATGTTCTGGACAACGCCC
TTCTCCGTGGCTACGGTTGACCATTCGTTTCCCCCTCTGCCCTGGCCTTG
CGTTGCGTGCAGCGCATCACAGCGCAGCAGTTGCGTAGCTGATCGAGCCG
AGCTAGCCTATTTCGCTTGCGAAGAAGAGTGCTACATCCTTGCAACTACT
CTTTGCGACTCGCCTGATTGATAGTTATGCAGCGCAGTAGAGATCCATCG
CGGCGAGGAGGGAGGTCCACAGTCATTCCCGCGGAGCGATTTTCATGGAG
TGCGATGTGCAGTTCTTGTTAGGAAGGACGAGCGATGAGGAACACAATCC
AGTAAAACAGGAAGTGCCGTATGACGGCCAAAATGGCCATCTGTGCTTAG
ACAAGGATCAAACCTGAGCTCTCATCCAACCGCACATATCTCAAACACCT
GCCACCTGCCACCTGCCACCGCCTATGATGCTGCTGTTCTGTGTACAGCT
ATACGCAAGTGTATCGTAAATATGCCACGCCATGGCCGAATCGGCTGAGG
GTGTATGACGTGTTCGGTTGATTGCAAGCTTAAAAAAATTATCGCGACGC
GTGGTATTTTGTGGCGGGGAGTACGTTATCCTTTGTGGGTGTGTTATCTT
ACGTAGTGCGCTTCAATTTTTGTCTCAAGGAGTTGACTGCTGTTGGCATA
GATCGCATCCAGAGCTGCAACCCCCACGCCCCTGCCACTCGCCACGCCTA
CGGTTTGTAAGTTTTGTTGAAGCAGCAGCCTGGTTTGTGCTGCCTCGCAC
ATGCGCGATTTGTCTGTGAAGACGACGTTTTTGCTCTGCCGGCTTGACCC
GCTGCATGTTGTGGCATTCCGTAGGCCACTGCTTGAGACACGAGTCACTT
GAGCAGTACACGAAGAGTTGAACACATAAAACTCAGGTAGCCTTTTTTTA
TAAGCTTTCTATCGCTGTTCTTTTCGCTCTCTGTCTTGCTTTTCCGATCA
GAACCGGTCGGTCGTCACCCCTCAGGACAGCGAAAATTTGTCGCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60:25447..26795-

>mRNA_Ecto-sp13_S_contig60.16588.1 ID=mRNA_Ecto-sp13_S_contig60.16588.1|Name=mRNA_Ecto-sp13_S_contig60.16588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:25447..26795- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTACCACGTCATCGATGCTGTGGTACCTCTGCCCACATCCACATGT
CCCATACGTCAGTGTTCCGCCCGGTGTTGACCATATAACCAGTTTTCCTG
CTTTCTATCGCTGTTCTTTTCGCTCTCTGTCTTGCTTTTCCGATCAGAAC
CGGTCGGTCGTCACCCCTCAGGACAGCGAAAATTTGTCGCGATGA
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