prot_Ecto-sp13_S_contig60.16585.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig60.16585.1
Unique Nameprot_Ecto-sp13_S_contig60.16585.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length111
Homology
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A6H5KRS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS0_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.550e-48
Identity = 89/95 (93.68%), Postives = 94/95 (98.95%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKVRRL 111
            + QVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPS+TPQEK+R++
Sbjct:   79 KKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSDTPQEKIRKI 173          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: D8LL21_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL21_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 1.010e-47
Identity = 89/95 (93.68%), Postives = 92/95 (96.84%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKVRRL 111
            + QVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVT DGIKPSIKQERNTIILREIPSETPQEK+R +
Sbjct:   74 KKQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTSDGIKPSIKQERNTIILREIPSETPQEKIREI 168          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A836CHL1_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL1_9STRA)

HSP 1 Score: 119 bits (298), Expect = 3.610e-31
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETP 104
            + QVEFYFSK NLQSDGFLVS+M+A  CVP++VIAQF K++ LT+D   I  +V +S+VCTVTP GI+P++K ER+TIILREIPS+TP
Sbjct:   58 RQQVEFYFSKANLQSDGFLVSRMDASGCVPISVIAQFAKVRALTTDEGAIAAAVANSSVCTVTPQGIRPNLKAERHTIILREIPSDTP 145          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A7S4DKN7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DKN7_HETAK)

HSP 1 Score: 116 bits (291), Expect = 4.050e-30
Identity = 60/95 (63.16%), Postives = 75/95 (78.95%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIPSETPQEKVRRL 111
            + Q+EFYFS+QNLQ+DGFLVSKMNA M VP+ VIA+F KI+ LT +  +I  +++ S VC VT D IKP+ K ERNTIILREIPS TP+EKVR +
Sbjct:   41 KKQIEFYFSRQNLQTDGFLVSKMNANMEVPITVIAEFAKIRALTREPDVIRAALEGSKVCIVTEDAIKPNFKTERNTIILREIPSNTPEEKVREI 135          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A024TXK9_9STRA (HTH La-type RNA-binding domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TXK9_9STRA)

HSP 1 Score: 115 bits (289), Expect = 4.420e-28
Identity = 61/89 (68.54%), Postives = 75/89 (84.27%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSET 103
            +SQVEFYFSK NL +D FLVS+MN+QM VPV VI  F KI+ LT+D AL+V+S+KDSTVC+++P+G  IKP+IK ERNTIILREIPS T
Sbjct:   17 KSQVEFYFSKANLVNDTFLVSQMNSQMYVPVDVIVGFSKIKALTTDVALVVDSIKDSTVCSLSPEGDAIKPNIKSERNTIILREIPSAT 105          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A6G0W682_9STRA (HTH La-type RNA-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W682_9STRA)

HSP 1 Score: 115 bits (287), Expect = 7.330e-28
Identity = 60/89 (67.42%), Postives = 74/89 (83.15%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSET 103
            ++QVEFYFSK NL +D FLVS+MNAQM VP+ VI  F KI+QLT D AL+VE++KDS VC+++P+G  IKP+IK ERNTIILREIPS T
Sbjct:   16 KNQVEFYFSKANLANDSFLVSQMNAQMYVPLDVILGFSKIKQLTEDAALVVEAIKDSKVCSLSPEGDAIKPNIKSERNTIILREIPSAT 104          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: W4GF54_9STRA (HTH La-type RNA-binding domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GF54_9STRA)

HSP 1 Score: 112 bits (281), Expect = 5.840e-27
Identity = 59/89 (66.29%), Postives = 74/89 (83.15%), Query Frame = 0
Query:   17 QSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTPDG--IKPSIKQERNTIILREIPSET 103
            +SQVEFYFSK NL +D FLVS+MN+Q+ VPV VI  F KI+QLT+D AL+++S+KDS VC+ +P+G  IKP+IK ERNTIILREIPS T
Sbjct:   17 KSQVEFYFSKANLINDTFLVSQMNSQLYVPVDVIVGFSKIKQLTTDVALVIDSIKDSKVCSSSPEGDAIKPNIKSERNTIILREIPSAT 105          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A0P1AUF3_PLAHL (La-related protein 4 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUF3_PLAHL)

HSP 1 Score: 108 bits (269), Expect = 4.430e-26
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   19 QVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKV 108
            QVEFYFS+ NL +D +LVS+MN+QM VPV VI  F KI+QLT +T L+VE+V+DSTVC+++   D IKP+IK ER TIILREIPS T  E+V
Sbjct:   21 QVEFYFSRSNLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDNTMLLVEAVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTKPEEV 112          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A0W8DNS3_PHYNI (Ammonium Transporter (Amt) Family n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DNS3_PHYNI)

HSP 1 Score: 108 bits (269), Expect = 6.800e-26
Identity = 58/92 (63.04%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   19 QVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTV--TPDGIKPSIKQERNTIILREIPSETPQEKV 108
            QVEFYFS+ NL +D +LVS+MN+QM VPV VI  F KI+QLT D AL+V++V+DSTVC++  + D IKP+IK ER TIILREIPS T  E+V
Sbjct:   21 QVEFYFSRANLANDAYLVSQMNSQMYVPVEVIINFSKIKQLTDDKALLVDAVQDSTVCSLNSSKDAIKPNIKSERTTIILREIPSSTKPEEV 112          
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Match: A0A484DRR2_BRELC (HTH La-type RNA-binding domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRR2_BRELC)

HSP 1 Score: 110 bits (274), Expect = 7.340e-26
Identity = 60/92 (65.22%), Postives = 73/92 (79.35%), Query Frame = 0
Query:   19 QVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVIAQFHKIQQLTSDTALIVESVKDSTVCTVTP--DGIKPSIKQERNTIILREIPSETPQEKV 108
            QVEFYFS+ NL +D +LVS MN+QM VPV VI  F KI+QLT +TAL+VESV+DSTVC+++   D IKP+IK ER TIILREIPS T  +KV
Sbjct:   19 QVEFYFSQSNLSNDAYLVSHMNSQMYVPVEVIINFAKIKQLTDNTALLVESVQDSTVCSLSSSKDAIKPNIKSERTTIILREIPSSTELQKV 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60.16585.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRS0_9PHAE1.550e-4893.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL21_ECTSI1.010e-4793.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHL1_9STRA3.610e-3165.91HTH La-type RNA-binding domain-containing protein ... [more]
A0A7S4DKN7_HETAK4.050e-3063.16Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A024TXK9_9STRA4.420e-2868.54HTH La-type RNA-binding domain-containing protein ... [more]
A0A6G0W682_9STRA7.330e-2867.42HTH La-type RNA-binding domain-containing protein ... [more]
W4GF54_9STRA5.840e-2766.29HTH La-type RNA-binding domain-containing protein ... [more]
A0A0P1AUF3_PLAHL4.430e-2663.04La-related protein 4 n=1 Tax=Plasmopara halstedii ... [more]
A0A0W8DNS3_PHYNI6.800e-2663.04Ammonium Transporter (Amt) Family n=1 Tax=Phytopht... [more]
A0A484DRR2_BRELC7.340e-2665.22HTH La-type RNA-binding domain-containing protein ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006630La-type HTH domainSMARTSM00715lacoord: 10..90
e-value: 2.5E-13
score: 60.3
IPR006630La-type HTH domainPFAMPF05383Lacoord: 18..71
e-value: 2.2E-18
score: 66.1
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 6..95
score: 17.89
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 15..98
e-value: 2.7E-23
score: 83.4
NoneNo IPR availablePANTHERPTHR22792:SF76LARP (RNA BINDING LA RELATED PROTEIN) HOMOLOGcoord: 17..108
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 17..108
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 16..97

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60contigEcto-sp13_S_contig60:291..623 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60.16585.1mRNA_Ecto-sp13_S_contig60.16585.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig60 291..623 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig60.16585.1 ID=prot_Ecto-sp13_S_contig60.16585.1|Name=mRNA_Ecto-sp13_S_contig60.16585.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
TPRPLLTPFHPPRPFRQSQVEFYFSKQNLQSDGFLVSKMNAQMCVPVAVI
AQFHKIQQLTSDTALIVESVKDSTVCTVTPDGIKPSIKQERNTIILREIP
SETPQEKVRRL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR036388WH-like_DNA-bd_sf
IPR036390WH_DNA-bd_sf