mRNA_Ecto-sp13_S_contig60.16589.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig60.16589.1
Unique NamemRNA_Ecto-sp13_S_contig60.16589.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig60.16589.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig60contigEcto-sp13_S_contig60:26974..28682 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size897
Hectar predicted targeting categoryother localisation
Exons3
Cds size735
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463834.5147295-UTR-Ecto-sp13_S_contig60:26973..271161681463834.5147295-UTR-Ecto-sp13_S_contig60:26973..27116Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig60 26974..27116 +
1681463834.5235887-UTR-Ecto-sp13_S_contig60:27901..279181681463834.5235887-UTR-Ecto-sp13_S_contig60:27901..27918Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig60 27902..27918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463834.5318947-CDS-Ecto-sp13_S_contig60:27918..279551681463834.5318947-CDS-Ecto-sp13_S_contig60:27918..27955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60 27919..27955 +
1681463834.5400271-CDS-Ecto-sp13_S_contig60:27984..286821681463834.5400271-CDS-Ecto-sp13_S_contig60:27984..28682Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig60 27985..28682 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig60.16589.1prot_Ecto-sp13_S_contig60.16589.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig60 27919..28682 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig60.16589.1

>prot_Ecto-sp13_S_contig60.16589.1 ID=prot_Ecto-sp13_S_contig60.16589.1|Name=mRNA_Ecto-sp13_S_contig60.16589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=245bp
MNLESLATTRGVGTQTRRPYSSPSLASNDSGSSIETDIDRCSKQVRHQRD
GNTTAAGHSTHAGEIRVVKSLQRKLLSDNGALLSRIERRLLRTDHKRKGV
VSISTFEAALAAEKNIDGTVIGHDEVRWLTRKLTGRNGKSVAILRMRALL
ESEEETGWKRRSSGKGRVDRHQHHRHRYRATSQCGRSSRGSERRRRSKWS
TAGDGEEIGGETMSESTCSGRGDAFLERRSLPPPPARWAIRQGTV
back to top

mRNA from alignment at Ecto-sp13_S_contig60:26974..28682+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig60.16589.1 ID=mRNA_Ecto-sp13_S_contig60.16589.1|Name=mRNA_Ecto-sp13_S_contig60.16589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:26974..28682+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGCCATCGCAATCAAATCAATGGCTTGCAGTAGCTAGCATGTGGGCCT
CTCAGTTTACTCTAGGGATTTAGCTGTGCACAGCTGGATGTCGCGGAAGA
ACCCACGCGACCGTGGAGGTGCCACCAGCGCAAGGAAGAAGAGGTACGAG
ACACGTGGGTGGATCCGGTGTGGACGTGCTGTAGACTTCGTACAGGAGCA
TGGTCACACTGCGCTGTAGAACGAAGACAGTTAGTGGCGAGACCAGCTCG
AAACACAAGCACAACAAGAAACCCAAGAAATTCAGGCTCAGCTCTTGAAA
AATAAGAACACAAAATGGCCTTTCGCCACTTCTACTACATTTATGTATAT
GTAACAACGGGTGGCAATAATAGCCTGAAGTTGCTCAATCTGTGAGACCA
AACGGTTTGGAGGCGGTGTTCTGATGAGTGGGCCGGCCACACTGCTGTAT
TCAGGGAATCCTTACAATCCATACATTTGCTGGAGAGAAGAAGAGAGCTG
GCTCGCCCTTCATCAGCGAACTATATCAGAACTGATGTCAATGGCAGGTT
CTCTGGGCTGTGTCACACCGGGGGCGGGGTGCCTTTCGCCGTTTTGTCGA
GGCCCCCCTTCATTGCATTCGTTGTCTCAGACGGCGTTCTTCTGAATGGT
ACTCATAGATGGACCTAAAAAACACACGTATGCATAGAACCATTGTTGAA
GCTACTCGTCAGAAGACTATTTGCCGGCCTATTCCTCCTGTGTCAAATGA
CTCACGTAGACCAGACTTATCCAATGATCCATCAGAGTAGGGGCCCACGT
CCAGTAGGGGACCACGTAGATGAGAAGCAAGACCAGAAGAGTGTTGGCGC
CGGTGTATGAATGCAAAGTTACACAATGACTTGTGGTACCCGTTCGGAAG
ACATGCGCATATTTATCTCTTCGTGCAGTTCATCGTGGTCTTCCGATGAA
TCTGGAATCGCTGGCAACAACGCGCGGCGTCGGCAACGAGGACGACCAAA
CATCAAGGAAGGGACACAAACACGCAGGCCCTATTCGTCGCCTTCGCTGG
CCAGCAACGATAGTGGTAGCAGTATCGAGACCGATATAGACAGGTGTAGC
AAACAAGTTCGGCACCAGCGCGATGGAAACACGACCGCCGCCGGACATTC
GACCCATGCCGGGGAAATCAGGGTTGTCAAATCCCTCCAGCGCAAACTCC
TTTCTGACAACGGGGCGCTTCTGAGCAGAATTGAGCGGCGGCTTTTGCGC
ACCGACCATAAAAGAAAGGGCGTTGTCAGCATCTCCACTTTCGAGGCTGC
TCTCGCTGCAGAAAAAAATATTGATGGGACCGTTATCGGGCATGATGAAG
TGCGCTGGCTCACCCGCAAGTTGACGGGAAGGAACGGCAAGAGCGTGGCC
ATCTTGAGGATGAGAGCTCTGCTAGAATCGGAGGAGGAGACGGGATGGAA
GCGACGGTCTAGCGGAAAAGGGAGGGTGGATCGACATCAACATCATCGCC
ATCGTTATCGCGCCACTTCGCAGTGCGGGCGAAGCTCACGAGGAAGCGAG
AGGAGACGTCGAAGCAAATGGTCCACTGCCGGTGATGGGGAAGAGATCGG
GGGAGAAACCATGAGCGAGTCTACATGTAGCGGGCGGGGGGACGCTTTCT
TGGAACGGCGGTCGTTGCCTCCACCTCCCGCGAGATGGGCGATTCGTCAG
GGCACAGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig60:26974..28682+

>mRNA_Ecto-sp13_S_contig60.16589.1 ID=mRNA_Ecto-sp13_S_contig60.16589.1|Name=mRNA_Ecto-sp13_S_contig60.16589.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=735bp|location=Sequence derived from alignment at Ecto-sp13_S_contig60:26974..28682+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCTGGAATCGCTGGCAACAACGCGCGGCGTCGGGACACAAACACG
CAGGCCCTATTCGTCGCCTTCGCTGGCCAGCAACGATAGTGGTAGCAGTA
TCGAGACCGATATAGACAGGTGTAGCAAACAAGTTCGGCACCAGCGCGAT
GGAAACACGACCGCCGCCGGACATTCGACCCATGCCGGGGAAATCAGGGT
TGTCAAATCCCTCCAGCGCAAACTCCTTTCTGACAACGGGGCGCTTCTGA
GCAGAATTGAGCGGCGGCTTTTGCGCACCGACCATAAAAGAAAGGGCGTT
GTCAGCATCTCCACTTTCGAGGCTGCTCTCGCTGCAGAAAAAAATATTGA
TGGGACCGTTATCGGGCATGATGAAGTGCGCTGGCTCACCCGCAAGTTGA
CGGGAAGGAACGGCAAGAGCGTGGCCATCTTGAGGATGAGAGCTCTGCTA
GAATCGGAGGAGGAGACGGGATGGAAGCGACGGTCTAGCGGAAAAGGGAG
GGTGGATCGACATCAACATCATCGCCATCGTTATCGCGCCACTTCGCAGT
GCGGGCGAAGCTCACGAGGAAGCGAGAGGAGACGTCGAAGCAAATGGTCC
ACTGCCGGTGATGGGGAAGAGATCGGGGGAGAAACCATGAGCGAGTCTAC
ATGTAGCGGGCGGGGGGACGCTTTCTTGGAACGGCGGTCGTTGCCTCCAC
CTCCCGCGAGATGGGCGATTCGTCAGGGCACAGTG
back to top