prot_Ecto-sp13_S_contig6.16581.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig6.16581.1
Unique Name	prot_Ecto-sp13_S_contig6.16581.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	201

Homology

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: D7FPQ2_ECTSI (Trigger_N domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ2_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 1.600e-134
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 0

Query:    1 MARQGVVAILASVLTAMCWSEAFAFVGTGINLHVSRWNGCGKRGIRMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVDPA 200
            MARQ +VAILASVLTA+C S+AFAFVGTGINLH +RWN CG RG+RMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVD A
Sbjct:    1 MARQALVAILASVLTALCCSQAFAFVGTGINLHSTRWNSCGTRGMRMEVEELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVDAA 200

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A835YVH3_9STRA (Trigger_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 9.990e-30
Identity = 62/180 (34.44%), Postives = 104/180 (57.78%), Query Frame = 0

Query:    5 GVVAILASVLTAMCWSEAFAFVGTGINLHVSRWNGCGKRGIRMEV----EELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAK 180
            G +  LA ++ A+    + AFV + +++     +G  +  +RM      E L      +K  +LE VDEA G+++YEF+IE  G  TQ++++ I +E++ K+ FPG+RKG+IPP    +   + +EE +NE L +ALA + L   +G    A++   +ED++  FKPGK LS +   +AK
Sbjct:    3 GTMTQLALLVVALLAPSSLAFVPSALSIG----SGSSRHAVRMTAAVAGEPLAHAMDGVKATRLEAVDEAAGIYQYEFEIEIQGDVTQNIYNGIEKELRKKAAFPGFRKGQIPPFARKQVITFSVEEAVNESLISALAAHGLEKLEGKEGNAELTQQVEDLVAAFKPGKTLSINAKVNAK 178

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A448ZF46_9STRA (Trigger_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZF46_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.310e-18
Identity = 42/140 (30.00%), Postives = 74/140 (52.86%), Query Frame = 0

Query:   58 AIKGKKLEIVDEAEG-------------VWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPE 184
            ++ G +++ + EAEG             + KY    +  GP  + +H  +L+E   K++FPG+RKG++PP  MP+   + ++E + +  Q+A+  Y L    G   E ++  D+ +M K +K G  L F+ TF+A   PE
Sbjct:   59 SLPGSRMKNMGEAEGLAGVRDDDEDQGPINKYWLTAKVEGPLIKEIHQTVLKESAKKANFPGFRKGQVPPFAMPQIRGFAVQEAIVQTCQSAVDAYGLKSVSGSDGEVEVLEDVPEMAKAYKLGDDLEFTATFNAIVDPE 198

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S2CNK0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CNK0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.740e-17
Identity = 37/123 (30.08%), Postives = 68/123 (55.28%), Query Frame = 0

Query:   58 AIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAK 180
            A+  K    +++ +   KY   +  PG  T+     I ++ K  +DFPG+RKG+IPP   P+   + +E  +N+G+  A+ +  L    G+   A++  D+ ++++ +K G PLSF+ +F AK
Sbjct:   70 ALPDKDTIQLEDGQTAHKYFLKMTIPGETTKEYMKEIEKDSKKNADFPGFRKGQIPPWAKPKLKTFCVETALNDGIMDAMESAKLTALDGEDKNAEVLEDVAELIRGYKIGTPLSFTASFSAK 192

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S4ER47_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ER47_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.850e-17
Identity = 53/189 (28.04%), Postives = 92/189 (48.68%), Query Frame = 0

Query:   13 VLTAMCWSEAFAFVGTGINLHVSRWNGCGKRGIRMEVEELEQLNPA--IKGKKLEIVDEAEG---------------VWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPE 184
            VL  +  + AFA V   + +  S     G+  +  E E  E+++P   + G +++ + EAEG               + KY    +  G   + +H  +L+E   K++FPG+RKG++PP  MP+   + ++E +    Q+A+  Y L    G   E ++  DI ++ K +K G  L F+ TF+A   PE
Sbjct:   11 VLLVLGNAAAFAPVAKHVVVASSALRAAGE--LVAEPEGGEEISPVKTMAGSRMKNMGEAEGLSGVRSEEDAETQGTINKYWLTAKVEGSLVREIHQTVLKESAKKANFPGFRKGQVPPFAMPQIRGFAVQESIVRTCQSAVDAYGLKSVSGSDGEVEVLEDIPEVAKAYKLGDDLEFTATFNAVVDPE 197

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S1Z771_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z771_TRICV)

HSP 1 Score: 85.1 bits (209), Expect = 8.240e-17
Identity = 42/137 (30.66%), Postives = 72/137 (52.55%), Query Frame = 0

Query:   44 GIRMEVE-ELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDA 179
            G RM+V  E E  +P +K       ++   V+ +    EA G   + +  R+ ++   K++FPG+RKG+IPP   P+ T + ++E +   ++ A+  Y L    GD    ++  D+ +M K +K G PL F+ TF A
Sbjct:   66 GSRMKVMGETETDDPNVKA------EDGSTVYDFWLTAEADGTLIKEVRTRVSKDASRKANFPGFRKGQIPPYAQPQITNFAVQEGIINTIEAAVGAYGLKSLPGDAGSVEVLEDVTEMCKGYKTGDPLQFTATFRA 196

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: K0R1B8_THAOC (Trigger_N domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R1B8_THAOC)

HSP 1 Score: 84.0 bits (206), Expect = 1.500e-16
Identity = 45/158 (28.48%), Postives = 86/158 (54.43%), Query Frame = 0

Query:   50 EELEQLNPAIKGKKLEIVDEA-EGVWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAK--------PKPEDEDGGPDDDAAAVD 198
            +EL +++ +++G +++ + E  +GV+ +    +A G + +SL  +  +E   K++FPG+RKG+IPP  MP+   + I+E + +  + +L  Y L    G      I   +ED++K +K G  + F+ T+  K        P   +E+G  D +A A+D
Sbjct:   49 DELIRVSSSMEGSRMKNMGEVGDGVYNFWLTGKADGGKIKSLIQQTEKEASRKANFPGFRKGQIPPYAMPQIRTFAIQEALIKTCEESLEAYGLESLPGSDGSVTINEKVEDIVKGYKVGSDVEFTATYKGKFDSNTAVEPAEPEEEGVVDVEAVALD 206

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S1E1Y9_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E1Y9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 3.600e-16
Identity = 40/132 (30.30%), Postives = 74/132 (56.06%), Query Frame = 0

Query:   60 KGKKLEIVDEAEG-------VWKYEFDIEAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPE 184
            +G +++ ++EA+G       V+K+     A G   +     +L++ K K++FPG+RKG++PP  MP+ T + I+E + + ++ A+A Y L    G   + +I  D+E++ K +K G  L F+ T +    PE
Sbjct:    1 EGTRVKKLEEADGLKSNDGPVYKFWLKSLASGDLIKEYKITLLKDAKKKANFPGFRKGQVPPYAMPQITGFAIQESLIKTVEQAVAAYALKSLPGSDGQVEILEDVEELCKGYKDGTSLEFTATLNCAFDPE 132

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S2VBM0_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2VBM0_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.990e-16
Identity = 42/154 (27.27%), Postives = 82/154 (53.25%), Query Frame = 0

Query:   40 CGKRGIRMEV-------EELEQLNPAIKGKKLEIVDEAEGVWK-----YEFDI--EAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDA 179
            CG  G+ +E         E+  +  ++ G +++ ++E +GV       YEF +  E  G   + +   IL++   K++FPG+RKG++PP  +P+ T + ++E + + +Q  +  Y L   +GD  + ++K D+ED+ K +  G P   + T +A
Sbjct:   33 CGALGMVVEAFPEPEGGVEVSPVGSSLPGSRVKQMEELKGVKSDLGTPYEFWLTAEVDGTLVKEVRTTILKDASKKANFPGFRKGQVPPYALPKMTTFAVQEAIIKTVQAVVDCYGLKELEGDDGKVEVKEDLEDICKGYNVGDPFQITATINA 186

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BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Match: A0A7S2S838_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S838_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.300e-15
Identity = 40/134 (29.85%), Postives = 73/134 (54.48%), Query Frame = 0

Query:   55 LNPAIK--GKKLEIVDEAEGVWKYEFDI--EAPGPRTQSLHHRILREIKNKSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGSEADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPE 184
            +N  +K  G+KL+  D+  G+  Y F +  EA G   + +  ++L++    ++FPG+RKG+IPP   P+ T + I+E + +  ++A+  + L    G     ++  D+++M   +K G  L F+ TF A   PE
Sbjct:   64 INSRMKNMGQKLDETDKESGLPIYSFWLTSEADGAYVKEIRTKVLKDASKNANFPGFRKGQIPPYAQPQMTGFAIQESIIKTCESAVDAFGLKSLPGSAGSVEVLEDVKEMSAGYKQGASLQFTATFKAMVDPE 197

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig6.16581.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FPQ2_ECTSI	1.600e-134	94.50	Trigger_N domain-containing protein n=2 Tax=Ectoca...	[more]
A0A835YVH3_9STRA	9.990e-30	34.44	Trigger_N domain-containing protein n=1 Tax=Tribon...	[more]
A0A448ZF46_9STRA	1.310e-18	30.00	Trigger_N domain-containing protein n=1 Tax=Pseudo...	[more]
A0A7S2CNK0_9STRA	2.740e-17	30.08	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S4ER47_9STRA	2.850e-17	28.04	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
A0A7S1Z771_TRICV	8.240e-17	30.66	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
K0R1B8_THAOC	1.500e-16	28.48	Trigger_N domain-containing protein n=1 Tax=Thalas...	[more]
A0A7S1E1Y9_9STRA	3.600e-16	30.30	Hypothetical protein n=2 Tax=Thalassionema nitzsch...	[more]
A0A7S2VBM0_9STRA	3.990e-16	27.27	Hypothetical protein n=2 Tax=Amphiprora paludosa T...	[more]
A0A7S2S838_9STRA	4.300e-15	29.85	Hypothetical protein n=1 Tax=Eucampia antarctica T...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008881	Trigger factor, ribosome-binding, bacterial	PFAM	PF05697	Trigger_N	coord: 74..184 e-value: 1.0E-8 score: 35.6
IPR036611	Trigger factor ribosome-binding domain superfamily	GENE3D	3.30.70.1050		coord: 61..184 e-value: 4.3E-6 score: 28.8
IPR036611	Trigger factor ribosome-binding domain superfamily	SUPERFAMILY	102735	Trigger factor ribosome-binding domain	coord: 74..186
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..24
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 25..200
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..24 score: 0.77
None	No IPR available	TMHMM	TMhelix		coord: 5..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig6	contig	Ecto-sp13_S_contig6:18776..23393 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig6.16581.1	mRNA_Ecto-sp13_S_contig6.16581.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig6 18145..23393 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig6.16581.1 ID=prot_Ecto-sp13_S_contig6.16581.1|Name=mRNA_Ecto-sp13_S_contig6.16581.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=201bp
MARQGVVAILASVLTAMCWSEAFAFVGTGINLHVSRWNGCGKRGIRMEVE
ELEQLNPAIKGKKLEIVDEAEGVWKYEFDIEAPGPRTQSLHHRILREIKN
KSDFPGYRKGEIPPRLMPEATKYVIEEVMNEGLQTALATYNLVGAKGDGS
EADIKNDIEDMLKVFKPGKPLSFSCTFDAKPKPEDEDGGPDDDAAAVDPA
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR008881	Trigger_fac_ribosome-bd_bac
IPR036611	Trigger_fac_ribosome-bd_sf