mRNA_Ecto-sp13_S_contig6.16580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6.16580.1
Unique NamemRNA_Ecto-sp13_S_contig6.16580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig6.16580.1 vs. uniprot
Match: D7FPQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ3_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 1.230e-31
Identity = 66/70 (94.29%), Postives = 67/70 (95.71%), Query Frame = 1 
Query:    1 ARCNARQEEAEALRGQLVAKGVRVAGLEKTNAQIRNRAKMLLAKSDTDDRLVDALRKEVQVLRNVGSSSR 210
            A+CNARQEEAEALRGQLVAKG RVAGLEKTN QIRNRAKMLLAKSDTDDRLVDALRKEVQ LRNVGSSSR
Sbjct:  211 AKCNARQEEAEALRGQLVAKGARVAGLEKTNMQIRNRAKMLLAKSDTDDRLVDALRKEVQALRNVGSSSR 280
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6.16580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPQ3_ECTSI1.230e-3194.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6contigEcto-sp13_S_contig6:16643..18395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size210
Hectar predicted targeting categoryother localisation
Exons3
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463833.2290058-CDS-Ecto-sp13_S_contig6:16642..167101681463833.2290058-CDS-Ecto-sp13_S_contig6:16642..16710Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 16643..16710 +
1681463833.2426915-CDS-Ecto-sp13_S_contig6:16890..170021681463833.2426915-CDS-Ecto-sp13_S_contig6:16890..17002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 16891..17002 +
1681463833.2538729-CDS-Ecto-sp13_S_contig6:18365..183951681463833.2538729-CDS-Ecto-sp13_S_contig6:18365..18395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 18366..18395 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6.16580.1prot_Ecto-sp13_S_contig6.16580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6 16643..18395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6.16580.1

>prot_Ecto-sp13_S_contig6.16580.1 ID=prot_Ecto-sp13_S_contig6.16580.1|Name=mRNA_Ecto-sp13_S_contig6.16580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
ARCNARQEEAEALRGQLVAKGVRVAGLEKTNAQIRNRAKMLLAKSDTDDR
LVDALRKEVQVLRNVGSSSR
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mRNA from alignment at Ecto-sp13_S_contig6:16643..18395+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6.16580.1 ID=mRNA_Ecto-sp13_S_contig6.16580.1|Name=mRNA_Ecto-sp13_S_contig6.16580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6:16643..18395+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGATGTAATGCCCGGCAAGAAGAGGCAGAGGCCTTGCGGGGTCAGTT
GGTGGCGAAAGGAGTGAGGTAGGTGTCCAACAGAGCACGTAGCTCGTTGG
CCTCACCGTTGGTTCTGAACAGGCATACGACTCAAGATAATGTACATAGC
TTCCGAGGTGTTCACAATAAGAGCGACTACTTGTAGTGTCCCCACATGTC
TGAGGCACACTTGGGCACACTGTCGTGTGGATATCTTGATCCTAACAGGG
TCGCCGGCCTAGAAAAAACGAACGCGCAGATCCGAAACCGTGCCAAGATG
CTCCTGGCAAAGTCAGACACGGACGATCGCTTGGTGGATGCCCTGCGGAA
GGAAGTACAAGTGAGTGCCTCGAAACCCTTTTGTTCTCTTGCGGTCCCCT
TTTACTCCTCTTGATTTGAGGTTCTGGCTGCAGATGTTCAGACAATCGCA
TGCTGCAGGACTTGGCCAGAAGATTTTGGAATAAACTTTTTTTTTGTAAA
AAAAAAAGTCTGATGCCGAGGGAACTTTAACTTTGACAGGGACGATCTTA
AATCAGTATTCAATGCGTTTTACTGCGGCTATAAAAGAACACCTGGTGAT
ACATTCGCCTGACCTTGGCACTAGTTCTCTGCTAGGACATCAAGCCGAGC
AGCGGTGGTAGTGCGGGAGTACTTGTATTGGACAACCGCGACAGATGCGT
TACAGGAAGAGGCACAATTGCCGTGGTATTTATTTAAAGTCCTACAGCAG
ATGTACGTGCAAGAATGTCTCCGATTCGTGTTGCGTGCTTTGGCCCGGAA
ATTACAATCAATCGTCGTGAGGTTTTTCTGCATTTTTTTGGCTCTCCCTT
TCCAATGCGAGGGTTCGGACTGCATGGCACCAGTGTAGTTGAGGTGAAAG
AAAACTTTGTCGGTACATCCCGTAAAACAATACGTCAAGTATGTGTTAGG
GATCGTCATCAAGGGGATGATTATTAGCGAAACCCGGACCCGTCCTCGAG
ATTTCGATTTCCCTTCGCGGACAGCTAAAGGGGTCATCTTTTTCTTGTAC
TTTTTGTCCGGGATATTTCTCAGAAGGAACGCTGGCGAAAACTTCCACTT
GATCATGCACAAAACCCCTTCCAAGTTTCAAGCGCCAAATCAGATGAGGA
TGGATGTATTGGGTTATGAGTGGCACCAGATGGTAGGGTAGTGTCACCAG
CTCAATGAACACATTGCTATAGTAAAGTGATTTTGCAGTCGTTCAAAGAA
GTAAACCTTTAACCTGTGTGGGTTAGACAAAACCTTCCCCACTTTCTGTG
GTTTCCCCGTGCTGAATCAATGGGCTTATTGGAAAACCTGTGTTGTGGTG
TTAACGGGAAACGCCCCTACTCTTGAGACTATCTCAATGTAAGCATTCTT
GTTTTCTGGGAAGTACGTGTCGTAGACAAAAAAAACACTGTAGTGTTCTC
TCTCGGTCACCAACAGTCTAGTTCATGACTGAATTCTGTTTTCCTTGCCT
TGCCCACCATTTTCAGTTCAAAGAAGATTATCGTGGTCCTTCGTTCGTTA
ACCACGCGTACACGGTTTCTCCTTGTATCCAATTTCACACGACACGGAAT
GCGCCCCGTCAGGCTGACGTATGGACGTCAGTCGATGTCTGGGGTAGGCC
AAAATTTTCTAATGCGATTTGAACAAAGTCGTCGTGCCCACAAAACTATC
CCTCTGCATGCTCTGAATGGCAGGTGCTGCGAAACGTCGGAAGCTCATCG
CGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6:16643..18395+

>mRNA_Ecto-sp13_S_contig6.16580.1 ID=mRNA_Ecto-sp13_S_contig6.16580.1|Name=mRNA_Ecto-sp13_S_contig6.16580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6:16643..18395+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAAGATGTAATGCCCGGCAAGAAGAGGCAGAGGCCTTGCGGGGTCAGTT
GGTGGCGAAAGGAGTGAGGGTCGCCGGCCTAGAAAAAACGAACGCGCAGA
TCCGAAACCGTGCCAAGATGCTCCTGGCAAAGTCAGACACGGACGATCGC
TTGGTGGATGCCCTGCGGAAGGAAGTACAAGTGCTGCGAAACGTCGGAAG
CTCATCGCGG
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