mRNA_Ecto-sp13_S_contig6.16579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig6.16579.1
Unique NamemRNA_Ecto-sp13_S_contig6.16579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: D7FPQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ3_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 3.430e-62
Identity = 145/257 (56.42%), Postives = 161/257 (62.65%), Query Frame = 3
Query:  435 MAAALQKLQNQNAMLLEAVEEKSRQVLELGALVEAL-EPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSAGPRLDTQPAAVSSLARIDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQIVMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEIHFMERHRGHAIEQLEAR 1202
            MAAALQKLQNQNAMLLEAVEEKSRQ+ E  +    L E   G+   A        GD   R   + Y                         CL       V S +    R +    S+A   ++T    +     + G     + QIV LRNKLHEAQEE+KKT+RALSKEVGGTSLGLGR L DTGGWKGRAQQIVMLKATVKQLQTQL NGRDPGQSGETRSKQGRKDVDS AQEEIH+MERHRGHAIEQLEA+
Sbjct:    1 MAAALQKLQNQNAMLLEAVEEKSRQLPESASRGGRLGERANGVSKTA--------GDRVIRSTSVGY---------------------PAGGCL-------VFSPD----RWKRRTPSTAASTIETYHHKL-----MRGTCTPAKQQIVLLRNKLHEAQEEVKKTYRALSKEVGGTSLGLGRTLNDTGGWKGRAQQIVMLKATVKQLQTQLRNGRDPGQSGETRSKQGRKDVDSQAQEEIHYMERHRGHAIEQLEAK 212          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A812W7Q1_SYMMI (CCDC13 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812W7Q1_SYMMI)

HSP 1 Score: 95.1 bits (235), Expect = 3.350e-18
Identity = 75/192 (39.06%), Postives = 108/192 (56.25%), Query Frame = 3
Query:  627 DYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSAGPRLDTQPAAVSSLARIDG---NEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQIVMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEIHFMERHRGHAIEQL 1193
            DYRD KI+ LAK+ R+    L KER      + + +    +    +R+L++VSS   R     A  S  +R D    +  +L+ Q+  LR KL  +Q+E KK  RAL+KE+G   + + +A+ D  GW+GRAQQIVMLKA VK+L+     G+  G  G TR   G +DVD+ A+EE+  M   R  A+E L
Sbjct:    1 DYRDTKIVSLAKKCRNLTRSLNKERGLNQSIKDKINTRQDDNGRLKRELDLVSSPAARAAATRARESKGSRGDAPSKDSAQLQKQVEDLRRKLTASQDETKKLSRALAKELG-EGVSVEQAVDD--GWRGRAQQIVMLKAKVKRLEA----GQTSGGVGRTR---GTRDVDAKAEEELQSMSAERQQAVEAL 182          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A7S2ST90_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST90_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 5.080e-18
Identity = 92/273 (33.70%), Postives = 139/273 (50.92%), Query Frame = 3
Query:  456 LQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSAGPR-------LDTQPAAVSSLARID---GNEER--------LRH---QIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDT---GGWKGRAQQIVMLKATVKQLQTQL---TNGRDPGQSGETRSKQGRKDVDSLAQEEIHFMERHRGHAIEQL 1193
            L  +N+ L + + ++  QV +LG ++EALEPVPG+D    L +L  G D      + D RDVKI+QLAK+ R+   +  K ++     + EA    +E+ +  +Q+  ++S   R       + T P   +S  + D   G E+R        LR    ++V+ R ++ +A EE KK    L KE+G   L  G A+       GW+GRA+ IV+L++ VK+LQ  L   T  RDP  +      Q   DVD +A +EI  ME  R  A EQL
Sbjct:   16 LAQENSKLSQELADRRLQVKKLGVMLEALEPVPGVDAERLLDLLE-GQDV----AEADPRDVKIVQLAKKSRNLMLENNKLKSQLRAQQTEAAAKDREIESLNKQMAAMASPAAREVIMKQLIGTHPKDEASEKQRDEGEGKEDRSPSFASAQLRRKDREVVEARQRVAKATEEAKKLKNLLHKELG---LAEGEAIPQKVFEDGWRGRAETIVLLRSKVKKLQGDLEAATGRRDPKMAA-----QSHHDVDRMAAQEIADMEGERRRATEQL 275          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A6G0XPV6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV6_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.760e-16
Identity = 76/206 (36.89%), Postives = 108/206 (52.43%), Query Frame = 3
Query:  447 LQKLQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSAGPRLDTQPAAVSSLARIDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQIVMLKATVKQLQTQL 1064
            +Q L+ QN+ L+  +++  RQV EL  L+E +EP+PGLD N+   VL  G D      D D RDVKI+ +AK++R     L KER     A   + +   E    + Q +++ S       Q     S  +ID +      +  +LR K      E+KKT RAL +EVG   + L   L    G +GRAQQIVMLKA VK+L+ +L
Sbjct:   75 IQALKLQNSELVATIKDLKRQVAELEVLLEGVEPIPGLDINSLKDVLQ-GADI----VDHDIRDVKIVHMAKKLRQTKVTLTKERNKAAGA--SSRIAELEQALHQAQEDLLRSQRQVHKLQLGEKPSEPKIDLSSVVPVKKFDELRVKFEAQTIELKKTQRALQREVG-EDVPLAELLDGESGKRGRAQQIVMLKAKVKKLEKEL 272          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A7S1U590_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U590_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 3.980e-16
Identity = 79/253 (31.23%), Postives = 127/253 (50.20%), Query Frame = 3
Query:  465 QNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSA----------------GPRLDTQPAAVSSLARIDGNEERL------RHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQIVMLKATVKQLQTQLTNGR--DPGQSGETRSKQGRKDVDSLAQEEI 1151
            QN  L+  +  K+RQ+  L ALV AL+P+PG+D   +  +L   GD     +DLD RD KI++L+K++R  +  L++ER     A R+      E+   R QL+ V+S                 G  ++   + VS    ++  ++ +      R Q  +L++KL   + E  + +  L +E+G   L    A+   G W+GRAQQI +LK  VK+L+ +L NG    PG     RS+   KDVD+ A+  +
Sbjct:   41 QNQALVAELSAKTRQIETLEALVAALKPLPGMDVAKYREMLESAGDG--HGEDLDVRDAKIVELSKKMRGVNVALQRERDRSRAAARQVAGKDAEIELLREQLDAVASPAVRNKLRHMQTEARRRGSSIEADASIVSPAEVVEQAQKAMKDAAAVRSQNDELKHKLEVQRIENNQLNTTLKREIGDGDL-FNAAIAGEG-WRGRAQQITLLKTKVKRLERELRNGGHGSPGTQNFQRSRDA-KDVDARAEAHV 288          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A1V9ZNI5_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZNI5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.110e-16
Identity = 80/255 (31.37%), Postives = 131/255 (51.37%), Query Frame = 3
Query:  396 DVMGNNVARLSGGMAAALQKLQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKEL-VACRRQLEIVSSAGPRLDTQPAAVSSLAR-IDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRAL-TDTGGWKGRAQQIVMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEI 1151
            D+ G+            +Q+L+  N+ LL +++ + +Q+ EL  L+EA+EP+PG+D  AF  +L      D      D RDVKI+  AK+IR       KE+        +   L K + VA   QL+   +   +L  +P  +S+  + I  +   +  +  +L+ K+     E+KKT RAL +EVG   + L   + ++  G +GRAQQIVMLKA +K+L+    +  +  ++ +T      KDVD  AQEE+
Sbjct:   59 DIQGSFQGEFKWDGVNEIQQLKQHNSELLASIKTQKQQIAELQLLLEAVEPLPGVDVEAFRDILQGSEVVDH-----DIRDVKIVHQAKKIRQVTLAYNKEKNRAAAVTTKMTELEKAVEVAQHAQLKAERALQKQLLNEPKKISTDEKEISAS---MAKKFEELKAKVDSQTFELKKTQRALLREVG-DDVSLSEIIESNESGKRGRAQQIVMLKAKIKKLERAAADSSNNQETTKT------KDVDQKAQEEL 298          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A8J2X1K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X1K6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.270e-15
Identity = 84/232 (36.21%), Postives = 124/232 (53.45%), Query Frame = 3
Query:  483 EAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKL----EKERASCLKARR---EADVLSKELVACRRQLEIVSSAGPRLDTQ-PAAVSSLARIDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTG-GWKGRAQQIVMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEI 1151
            + + +K +QV     ++EAL PVPG++P    + ++          ++D RD KIIQLAK+ R+    L    EK R   L   R   +A  L+KEL A R  L+  ++  P  + Q PA  + + +    E R   +  +LR+KL   + E  K  RAL +EVG     L  AL + G GWKGRAQQIVMLK  V++L+      R+  +SG  R +  R+DVD++AQ E+
Sbjct:  160 DELRQKRQQVKNYQVMLEALAPVPGVNPETIYAGINGA--------EVDVRDAKIIQLAKKARNYTVALASEREKNRKLALDFERLKIDATALAKELKA-RGPLDPDAARYPFQENQAPAKEAPVTKASQRERRAEKRSAELRHKLETERAETDKLRRALVREVGDK---LEDALANEGEGWKGRAQQIVMLKNKVRRLE------REVSESG-VRKRPPRRDVDAVAQREL 372          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A329T1T7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1T7_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.090e-15
Identity = 88/273 (32.23%), Postives = 133/273 (48.72%), Query Frame = 3
Query:  447 LQKLQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVL---SKEL-------------VACRRQLEIVSSAGPRLDTQPAAVSSLARID-GNEE-RLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGW------KGRAQQIVMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEIHFMERHRGHAIEQL 1193
            LQ+L N NA L     +  +QV  L   +EA  PVPGL+ +A   +L      ++   D D RDVKI+  AK +R     L++E+     A +++  L   +K+L                R   E +++ G     Q     + +R D GN+   L++   +L++K    Q+E+KKT RAL +EVG   + L   + +T         +GRAQQI MLKA VK+LQT+L   R    S ET       DVD  AQ+++   + HR   ++QL
Sbjct:  103 LQELTNANATLTSEARDLRQQVKALQIQLEAQAPVPGLNVDAVQDIL-----LEKDNLDHDVRDVKIVHQAKTLRTLKRSLQREKQQAADAAKQSQALETANKQLEEEVDTLKLKLQRFQARAAAEKINNNGAVTQPQRPESPTESRSDTGNDSGSLQNLCDELKSKNTTLQQELKKTQRALVREVG-DDVSLEEIIGNTDSTVSGASRRGRAQQIFMLKAKVKKLQTRLATMRPGTTSTETHDSGNVLDVDKRAQQDLSGQQMHRQKLLDQL 369          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: T0R3B0_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R3B0_SAPDV)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-14
Identity = 75/229 (32.75%), Postives = 114/229 (49.78%), Query Frame = 3
Query:  378 EDPAPS-DVMGNNVARLSGGMAAALQKLQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACRRQLEIVSSAGPRLDTQPAA-VSSLARIDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRAL-TDTGGWKGRAQQIVMLKATVKQLQ 1055
            ED  P+ +   NN +       + +Q L++QNA L+ A++   +Q+ EL  L+EALEP+PGLD +AF  +L      D      D R+VKI+  AK++R       KE+     A  +   + + + A +        A  RL  QP   V+        E     ++ +L+ K      E+K+T RAL +EVG   + L   L     G +GRAQQIVMLKA +K+L+
Sbjct:   46 EDVPPAIETSSNNQSDFKWDGISDIQSLKHQNAELVAAIKSHKQQINELQLLLEALEPIPGLDVDAFKDILQGSEIVDH-----DIRNVKIVHQAKKLRQATLAYNKEKTRAAAASTKMAEMERAVEAAQTLQLKAERALQRLQQQPRPDVAKKVPSPEKEVAASKKLEELKLKCEAQAVELKRTQRALQREVG-DDVALSDILDASDSGKRGRAQQIVMLKAKIKKLE 268          
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Match: A0A3R6Y5N2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6Y5N2_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.670e-14
Identity = 77/237 (32.49%), Postives = 112/237 (47.26%), Query Frame = 3
Query:  447 LQKLQNQNAMLLEAVEEKSRQVLELGA---------------LVEALEPVPGLDPNAFLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKARREADVLSKELVACR------RQLEIVSSAGPRLDTQPAAVSSLARIDGNEERLRHQIVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQIVMLKATVKQLQTQLTNGRDPGQSG 1094
            +Q LQ +N+ L+  +++   QV E G                ++EA+EP+PGLD N+   VL      D      D RDVKI+  AK++R     L KE+     A      L K+L          ++L      G + + +P A ++   +   E+        LR K   A  E+KKT RAL +EVG   + L   L   GG +GRAQQIVMLKA VK+L+ +L +  +P   G
Sbjct:   50 IQALQLKNSELVATIKDYKHQVTEYGLCLISFCGLCVCRLQLMLEAMEPIPGLDVNSLRDVLQGAEVVDH-----DIRDVKIVHQAKKLRQAKIALNKEKVKGAGASGRIAELEKQLHDAEENYHKSQRLVHKLQLGEKPEPKPEATTNTVPLKKFED--------LRVKYEAATIELKKTQRALQREVG-DDVPLADVLDGEGGKRGRAQQIVMLKAKVKKLEKELQSRSEPDTVG 272          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig6.16579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPQ3_ECTSI3.430e-6256.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A812W7Q1_SYMMI3.350e-1839.06CCDC13 protein n=1 Tax=Symbiodinium microadriaticu... [more]
A0A7S2ST90_9STRA5.080e-1833.70Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6G0XPV6_9STRA1.760e-1636.89Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A7S1U590_9STRA3.980e-1631.23Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1V9ZNI5_9STRA6.110e-1631.37Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A8J2X1K6_9STRA1.270e-1536.21Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A329T1T7_9STRA7.090e-1532.23Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
T0R3B0_SAPDV1.110e-1432.75Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
A0A3R6Y5N2_9STRA2.670e-1432.49Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig6contigEcto-sp13_S_contig6:12315..16161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score88.6
Seed ortholog evalue6.6e-15
Seed eggNOG ortholog4792.ETI50901
Model size1214
Hectar predicted targeting categorysignal peptide
Exons9
EggNOG OGs2CYMU@1,2S577@2759,3QC4B@4776
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_000930.1
Cds size1092
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig6.16579.1prot_Ecto-sp13_S_contig6.16579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig6 12794..16161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463833.1019762-UTR-Ecto-sp13_S_contig6:12314..123641681463833.1019762-UTR-Ecto-sp13_S_contig6:12314..12364Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6 12315..12364 +
1681463833.1124568-UTR-Ecto-sp13_S_contig6:12721..127931681463833.1124568-UTR-Ecto-sp13_S_contig6:12721..12793Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig6 12722..12793 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463833.1215818-CDS-Ecto-sp13_S_contig6:12793..129131681463833.1215818-CDS-Ecto-sp13_S_contig6:12793..12913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 12794..12913 +
1681463833.1308308-CDS-Ecto-sp13_S_contig6:13589..136951681463833.1308308-CDS-Ecto-sp13_S_contig6:13589..13695Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 13590..13695 +
1681463833.1396358-CDS-Ecto-sp13_S_contig6:14014..141751681463833.1396358-CDS-Ecto-sp13_S_contig6:14014..14175Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 14015..14175 +
1681463833.1481698-CDS-Ecto-sp13_S_contig6:14460..146571681463833.1481698-CDS-Ecto-sp13_S_contig6:14460..14657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 14461..14657 +
1681463833.1567314-CDS-Ecto-sp13_S_contig6:14980..150771681463833.1567314-CDS-Ecto-sp13_S_contig6:14980..15077Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 14981..15077 +
1681463833.165394-CDS-Ecto-sp13_S_contig6:15265..153341681463833.165394-CDS-Ecto-sp13_S_contig6:15265..15334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 15266..15334 +
1681463833.184288-CDS-Ecto-sp13_S_contig6:15696..159001681463833.184288-CDS-Ecto-sp13_S_contig6:15696..15900Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 15697..15900 +
1681463833.1930118-CDS-Ecto-sp13_S_contig6:16023..161611681463833.1930118-CDS-Ecto-sp13_S_contig6:16023..16161Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig6 16024..16161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig6.16579.1

>prot_Ecto-sp13_S_contig6.16579.1 ID=prot_Ecto-sp13_S_contig6.16579.1|Name=mRNA_Ecto-sp13_S_contig6.16579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=364bp
MEILRPLGKRFCLTFFCIFFCLSDETSMEQALQPASSVMELKYDPAGLAL
KYGVEGGVLDSELDGDSSDSNRGDIVPDDNGCSRPEDPAPSDVMGNNVAR
LSGGMAAALQKLQNQNAMLLEAVEEKSRQVLELGALVEALEPVPGLDPNA
FLSVLHFGGDTDRRKKDLDYRDVKIIQLAKRIRDRDAKLEKERASCLKAR
READVLSKELVACRRQLEIVSSAGPRLDTQPAAVSSLARIDGNEERLRHQ
IVQLRNKLHEAQEEIKKTHRALSKEVGGTSLGLGRALTDTGGWKGRAQQI
VMLKATVKQLQTQLTNGRDPGQSGETRSKQGRKDVDSLAQEEIHFMERHR
GHAIEQLEARERR*
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mRNA from alignment at Ecto-sp13_S_contig6:12315..16161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig6.16579.1 ID=mRNA_Ecto-sp13_S_contig6.16579.1|Name=mRNA_Ecto-sp13_S_contig6.16579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6:12315..16161+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCGACGAGAAACGTACCAAAAACCAGGGAACAAATGAAGTAGAGTCATG GTGAGCAGGGTGTAGAAATATCAAAACGGCACGTATCGGGTTTCTGACAT TAGAACTGGGTCACCCTGTGAAGGATGATGCCATGCCTTTTGTGAACAGC AGACGCACGACGCAGGTGGGGTATCTACGTCGCGCGCGGAGCAATGTTCT GACTTTTTTTTCTGTCTCCTAAAGGAATCACGGTACAGCCTCACCGTCTG TTACGGTCAGAAGACTCGCTTTCTGGCGCTCAAACGTGTCCGCAATGCTT CCCCTTCTCTGCCAAGCCCCTTGCGCCTCTCTCTTGGTGCACAACTCTTG ACGCGGTACTTACACACCTCGCACGACACCTGCTCGCCTTACCATTCTAC CATTCAGCGGCACTCCTTCAACCAAGGGCCAAGGGGGTACGCGGAGCATT GATAGGAAAGTGACGACACGATCAACAAGATGGAAATACTGCGCCCCCTG GGAAAAAGATTTTGTCTTACCTTTTTTTGTATCTTTTTCTGTCTGTCCGA CGAAACGAGCATGGAGCAAGCACTGCAACCGGCGTCGAGCGTCATGGAGG TGTGTGTTCCTCTCTCTTATACTTCGTGGTATATCTTGATCACCACACAT ACAGGACATGGTACTACTGTTGTAGTCTACAGCACATTGTTTTGTTTTGC AACCTTCGCATGCTTAGTCTTATCTTGATTTTGACTGTGTTTTTGTGCGC ATGTAGACTTGGGTTTGGATCACGTGGGTTCACGCTGGATCCGCGCTACT GGACAAGAGTGTGTGAGCAATCCATTTCTCTCGTGGACGTGAGGTGCTGC CACCGCTATTATGTCTGTGGGGTCGTTATGTTTGTGACCGAGGTGTGCAC TGTATCCAGCCAGCCCTTCTACTGTGCACAATAAAAACACTATCATCGTG TTTGTATGCTACAATCTACACGGTGCCTTTGACCCCCGTGGTTTAGATAT TACTTTTGGTAATCAACGGTTACAGTGGTCGGGGTCGACGGACGCTGGTT GACCAGACTTGATTATATTGAAGCCACTGCTGTTCATGTTATCCCCACTC TCTTGCGTGGGATTCGGTACGTATGCCGGAGAGCACAAAACTATCAGCCA CTCCGATACGTCCGTGGGGACGGTTGATTTCCCCGTCCCGTCTTAACTCG TTGAACTGGCAACGTTGTTGACATTTCATTCCAACCTTTGCCCTACGGTC TTGGACGTGCGGCACTGCTTCTCAGCTGAAGTATGATCCGGCTGGACTGG CGTTGAAGTACGGCGTTGAAGGGGGTGTGCTGGACTCAGAATTAGATGGC GATAGCAGCGACAGCAACCGTGGAGATATCGGTGGGGCCACATTAGATAT ATATCCTGTGCGGTACTTGTACTCCTTCCTTTGTTTGGGACGAAAAGTCG CGGTGCTGTACATACAGTATAGATACATACATAATGTAGATGTGACACTG GAAGTTTTCGGCGGGCAAGCTGTGATGCGTGGCAGTTAGTTCCGCACACG AGTCTAAAACCTCTTGAATTGAATCGTCGGAAATACTTCGAATTAAGTTG ATCTGGTTGCTCGACCGGTAATGATTAAAGGGAGGTGACTTATTGGAGAG AATCAGTGATATTTCTACACCTCGCCGCGCGCCATTTTGTCATGCTGTAG TCCCGGACGACAACGGTTGCTCACGACCTGAAGATCCAGCTCCGAGTGAT GTCATGGGCAACAACGTTGCACGACTGTCGGGTGGAATGGCGGCCGCTCT TCAAAAACTTCAAAATCAGAACGCCATGCTCCTGGAAGCGGTGGAGGAAA AAAGTCGACAGGTGCACATAGATCCCGCCACCTACAATTACAGATACATT ATGTGTGCAATACACGGCGTTTGGATTCGGTTTGCAACTTGTGGTACTTC CAATCGATGAGCTGAAGGTCTTGAGCTGAAGGTCTTCTGCGTGGGATTCG AAGAAATTCTGTAATGACAGTAGGCCTGACTATGGTGGTTGGATGAGAAG GAAATGGGGGTTGGACGCACCGGGCGTTTGCCTGAAAACAATCCTACCTG CAACAAGTGTCTGATTTTCAAACGCTGTCCACTTGCACCCTTCCAGGTGT TAGAGTTGGGTGCTTTGGTCGAGGCTTTGGAGCCCGTGCCCGGCCTGGAT CCCAACGCCTTTCTCTCAGTACTCCATTTCGGAGGTGACACAGATAGGAG GAAGAAGGACCTCGATTACAGAGATGTCAAGATAATTCAACTCGCGAAGC GTATCCGGGATCGAGATGCGAAGCTGGAGAAAGAGAGGGCAAGGTGGGCG GGATTGGCGTCATGATTCGTTGAAGTTACCACTTCATCCACACACGAAAA CAGACTGGACTCCGACACGTTGAACCGGACGGCTTTAGTCTTCGTTGTCT GGAGGATGGTTGTTGAGAATATCAGCATTTTTTTTTGTGGAACACGCAGA AACAACGCGATGGTTCACGTTTCGTAGAATTTTTCATGGCAACGGCGAGG ATCGTTTCGTTTCTTTCGTTATAGTGATTGTGCGGGGTGGAGTTATCTCT TTGTTCACCACTGTACCAGGAGGTATTGTTCATTCGCCTGCTTTTATTCC ATCTTGCTTTTCACAGTTGCCTGAAAGCGCGTCGAGAGGCGGACGTCTTG TCGAAAGAGCTTGTGGCGTGTCGAAGACAGCTTGAGATCGTGTCATCTGC TGGACCTCGGTTGGTGCGCAGTGTTGGGAAAAGGGCAGCACTCTATGTTA TTCAAACCAGAGCATTAGATGCTCGTGCAATATGTCAACTGCGTGTAAGC TTCTTGCTTGTGCTCAGAAGTACTCCTCGCTGAAATGAATGTTTCGGTGT ACATGTGCTACCCTGGGACCTTTTTTCCTGGCAATAAAACCTTGTGTCCA GGATACCCAGCCGGCGGCTGTCTCGTCTTTAGCCCGGATTGATGGAAACG AAGAACGCCTTCGACATCAGGTGATCTTGCTGCTTTCGAGTTTGGCGAAC AAGCCAACTATTGCGCTACATGAGAGGTCATGCGGGACATCCTCTCCGAT ACATTATTGTTCCCGATTTGACGAAATTTGTCCTGATTTTCGTGAGAAAG ACGCGTTGTATCCAAAGCGTAGGCTGCGCCAATCAAAAAATGTATGGGTT AGGTTAGAGCTATCGTTGCATGACCTACCATCGGAGTTCAATCCATCAGC GTGCTATCGCTGTGAGAACAACGCCCTCCCGCACTTCTTGTTCAAACTTT TTCTTACTACCAGCCAGCACCATCGAGATATAGCACCATAAGCTGACGCG AGGAACGTGCATACCCACCCGCAAAACTACAGATAGTGCAGCTGAGGAAC AAACTACATGAGGCACAAGAGGAAATAAAAAAAACGCACAGGGCTTTATC GAAAGAAGTAGGAGGAACCAGCTTGGGGCTAGGCCGGGCTTTGACCGACA CGGGCGGGTGGAAGGGGCGCGCTCAGCAAATAGTGATGTTGAAGGCGACG GTGAAGCAGCTGCAGACACAGCTTACGAACGGACGGGTGAGGTGGAGTTG TTCATAATTTGTTTTGTTTGACAACGTTCAGGAGCGCCTGCTGGTCGTTT ACTTGTGTCTCGCAAACTTGAAGGCTTCTGAAAAAAATGCTATGATAATA ACGTTCCAGGACCCTGGGCAATCTGGTGAAACCCGCAGCAAGCAAGGACG AAAGGACGTTGACAGCCTGGCGCAAGAGGAGATCCACTTCATGGAACGAC ATCGTGGGCACGCAATCGAGCAGCTGGAGGCGAGAGAAAGGCGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig6:12315..16161+

>mRNA_Ecto-sp13_S_contig6.16579.1 ID=mRNA_Ecto-sp13_S_contig6.16579.1|Name=mRNA_Ecto-sp13_S_contig6.16579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1092bp|location=Sequence derived from alignment at Ecto-sp13_S_contig6:12315..16161+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAATACTGCGCCCCCTGGGAAAAAGATTTTGTCTTACCTTTTTTTG
TATCTTTTTCTGTCTGTCCGACGAAACGAGCATGGAGCAAGCACTGCAAC
CGGCGTCGAGCGTCATGGAGCTGAAGTATGATCCGGCTGGACTGGCGTTG
AAGTACGGCGTTGAAGGGGGTGTGCTGGACTCAGAATTAGATGGCGATAG
CAGCGACAGCAACCGTGGAGATATCGTCCCGGACGACAACGGTTGCTCAC
GACCTGAAGATCCAGCTCCGAGTGATGTCATGGGCAACAACGTTGCACGA
CTGTCGGGTGGAATGGCGGCCGCTCTTCAAAAACTTCAAAATCAGAACGC
CATGCTCCTGGAAGCGGTGGAGGAAAAAAGTCGACAGGTGTTAGAGTTGG
GTGCTTTGGTCGAGGCTTTGGAGCCCGTGCCCGGCCTGGATCCCAACGCC
TTTCTCTCAGTACTCCATTTCGGAGGTGACACAGATAGGAGGAAGAAGGA
CCTCGATTACAGAGATGTCAAGATAATTCAACTCGCGAAGCGTATCCGGG
ATCGAGATGCGAAGCTGGAGAAAGAGAGGGCAAGTTGCCTGAAAGCGCGT
CGAGAGGCGGACGTCTTGTCGAAAGAGCTTGTGGCGTGTCGAAGACAGCT
TGAGATCGTGTCATCTGCTGGACCTCGGTTGGATACCCAGCCGGCGGCTG
TCTCGTCTTTAGCCCGGATTGATGGAAACGAAGAACGCCTTCGACATCAG
ATAGTGCAGCTGAGGAACAAACTACATGAGGCACAAGAGGAAATAAAAAA
AACGCACAGGGCTTTATCGAAAGAAGTAGGAGGAACCAGCTTGGGGCTAG
GCCGGGCTTTGACCGACACGGGCGGGTGGAAGGGGCGCGCTCAGCAAATA
GTGATGTTGAAGGCGACGGTGAAGCAGCTGCAGACACAGCTTACGAACGG
ACGGGACCCTGGGCAATCTGGTGAAACCCGCAGCAAGCAAGGACGAAAGG
ACGTTGACAGCCTGGCGCAAGAGGAGATCCACTTCATGGAACGACATCGT
GGGCACGCAATCGAGCAGCTGGAGGCGAGAGAAAGGCGTTGA
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