mRNA_Ecto-sp13_S_contig59990.16577.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig59990.16577.1
Unique Name	mRNA_Ecto-sp13_S_contig59990.16577.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: A0A6H5JC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC00_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 5.930e-21
Identity = 47/49 (95.92%), Postives = 48/49 (97.96%), Query Frame = 1

Query:    1 ADAVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            ADAVANAAASGTLLVDKSHWGVI VEGEDRLRFLHSQGTNAFERATAG+
Sbjct:  127 ADAVANAAASGTLLVDKSHWGVIRVEGEDRLRFLHSQGTNAFERATAGQ 175

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: D8LH90_ECTSI (Folate-binding protein YgfZ n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH90_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.000e-19
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1

Query:    1 ADAVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            ADAVA+AAASGTLLVDKSHWGVI VEGEDRLRFLHSQGTNAFERAT G+
Sbjct:  130 ADAVADAAASGTLLVDKSHWGVIRVEGEDRLRFLHSQGTNAFERATVGQ 178

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: A0A0D8ZWX9_9CYAN (Glycine cleavage system protein T n=2 Tax=Aliterella TaxID=1827277 RepID=A0A0D8ZWX9_9CYAN)

HSP 1 Score: 57.4 bits (137), Expect = 3.200e-8
Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1

Query:    1 ADAVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            ADA+  AA +G  + D+SHWG+I V G DR+RFLH+Q TN FER   GE
Sbjct:    9 ADAL-EAAQNGVAICDRSHWGIIQVTGSDRIRFLHNQSTNNFERLKPGE 56

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: A0A2T1EFI2_9CHRO (Folate-binding protein YgfZ n=1 Tax=Chlorogloea sp. CCALA 695 TaxID=2107693 RepID=A0A2T1EFI2_9CHRO)

HSP 1 Score: 57.0 bits (136), Expect = 4.510e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1

Query:   19 AAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            AA +G  + D+SHWG+I V G DRLRFLH+Q TN FER  +GE
Sbjct:   33 AAQNGVAICDRSHWGLIKVTGGDRLRFLHNQSTNDFERLKSGE 75

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: UPI0002AC5F5B (folate-binding protein YgfZ n=1 Tax=Synechocystis sp. PCC 7509 TaxID=927677 RepID=UPI0002AC5F5B)

HSP 1 Score: 56.6 bits (135), Expect = 6.190e-8
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1

Query:   28 SGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            SG  + D++HWGVI V G DRLRFLH+Q TN FER  +GE
Sbjct:   36 SGVAICDRTHWGVIEVTGGDRLRFLHNQSTNNFERLKSGE 75

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: UPI001D92F6FF (folate-binding protein n=1 Tax=Waterburya agarophytonicola TaxID=2886916 RepID=UPI001D92F6FF)

HSP 1 Score: 55.5 bits (132), Expect = 1.600e-7
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1

Query:    7 AVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            A   A   G  + D+SHWG+I + GEDRLR+LH+Q TN FE+   GE
Sbjct:   28 AALKAVEGGVAICDRSHWGIIKITGEDRLRYLHNQSTNDFEKLQPGE 74

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: A0A8J7JJN8_9CYAN (Folate-binding protein YgfZ n=1 Tax=Nodosilinea sp. LEGE 06152 TaxID=2777966 RepID=A0A8J7JJN8_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 3.010e-7
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1

Query:    1 ADAVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            ADA+  A ++G +LVD+SHWG+I + G DRLRFLH+Q TN F     GE
Sbjct:   28 ADAL-KALSTGAVLVDRSHWGLIQMNGRDRLRFLHNQTTNTFTERKPGE 75

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: UPI0019F1E544 (Folate-binding protein YgfZ n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019F1E544)

HSP 1 Score: 54.3 bits (129), Expect = 4.120e-7
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1

Query:   19 AAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            AA  G  L D+SHWG++ + GEDRLR+LH+Q TN F R   G+
Sbjct:   34 AAREGVALCDRSHWGLLQISGEDRLRYLHNQSTNDFNRLQPGQ 76

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: UPI0002F4E48F (folate-binding protein YgfZ n=1 Tax=Nodosilinea nodulosa TaxID=416001 RepID=UPI0002F4E48F)

HSP 1 Score: 54.3 bits (129), Expect = 4.120e-7
Identity = 25/47 (53.19%), Postives = 32/47 (68.09%), Query Frame = 1

Query:    7 AVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            A   A + G  LVD+SHWGVI ++G DRLRF+H+Q TN F +   GE
Sbjct:   28 AALEALSKGAALVDRSHWGVIQMDGGDRLRFIHNQTTNTFTQRQPGE 74

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BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Match: A0A3M1T7S9_9CYAN (Folate-binding protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A3M1T7S9_9CYAN)

HSP 1 Score: 54.3 bits (129), Expect = 4.130e-7
Identity = 25/47 (53.19%), Postives = 31/47 (65.96%), Query Frame = 1

Query:    7 AVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGE 147
            A   A   G +L D+SHWG I V G+DR+RFLH+Q TN F R  AG+
Sbjct:   32 AALQAVQEGAVLYDRSHWGRIRVSGDDRVRFLHNQSTNDFNRLQAGQ 78

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig59990.16577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JC00_9PHAE	5.930e-21	95.92	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LH90_ECTSI	1.000e-19	91.84	Folate-binding protein YgfZ n=1 Tax=Ectocarpus sil...	[more]
A0A0D8ZWX9_9CYAN	3.200e-8	57.14	Glycine cleavage system protein T n=2 Tax=Aliterel...	[more]
A0A2T1EFI2_9CHRO	4.510e-8	60.47	Folate-binding protein YgfZ n=1 Tax=Chlorogloea sp...	[more]
UPI0002AC5F5B	6.190e-8	62.50	folate-binding protein YgfZ n=1 Tax=Synechocystis ...	[more]
UPI001D92F6FF	1.600e-7	51.06	folate-binding protein n=1 Tax=Waterburya agarophy...	[more]
A0A8J7JJN8_9CYAN	3.010e-7	55.10	Folate-binding protein YgfZ n=1 Tax=Nodosilinea sp...	[more]
UPI0019F1E544	4.120e-7	53.49	Folate-binding protein YgfZ n=1 Tax=Pleurocapsales...	[more]
UPI0002F4E48F	4.120e-7	53.19	folate-binding protein YgfZ n=1 Tax=Nodosilinea no...	[more]
A0A3M1T7S9_9CYAN	4.130e-7	53.19	Folate-binding protein n=2 Tax=Cyanobacteria TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig59990	contig	Ecto-sp13_S_contig59990:16..183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	0
Seed ortholog score	90.5
Seed ortholog evalue	2.7e-16
Seed eggNOG ortholog	2880.D8LH90
Model size	168
KEGG rclass	RC00022,RC00069,RC00183,RC02834
KEGG ko	ko:K00605
KEGG Reaction	R01221,R02300,R04125
KEGG Pathway	ko00260,ko00630,ko00670,ko01100,ko01110,ko01130,ko01200,map00260,map00630,map00670,map01100,map01110,map01130,map01200
KEGG Module	M00532
Hectar predicted targeting category	no signal peptide or anchor
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006790,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016226,GO:0016491,GO:0022607,GO:0031163,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0055114,GO:0071840
Exons	1
EggNOG free text desc.	aminomethyltransferase activity
EggNOG OGs	COG0404@1,KOG2770@2759
EC	2.1.2.10
Cds size	168
COG Functional cat.	E
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko01000

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681463832.8482943-CDS-Ecto-sp13_S_contig59990:15..183	1681463832.8482943-CDS-Ecto-sp13_S_contig59990:15..183	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig59990 16..183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig59990.16577.1	prot_Ecto-sp13_S_contig59990.16577.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig59990 16..183 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig59990:16..183+
coding sequence from alignment at Ecto-sp13_S_contig59990:16..183+

protein sequence of mRNA_Ecto-sp13_S_contig59990.16577.1

>prot_Ecto-sp13_S_contig59990.16577.1 ID=prot_Ecto-sp13_S_contig59990.16577.1|Name=mRNA_Ecto-sp13_S_contig59990.16577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
ADAVANAAASGTLLVDKSHWGVIGVEGEDRLRFLHSQGTNAFERATAGER
GRWIQ*

mRNA from alignment at Ecto-sp13_S_contig59990:16..183+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig59990.16577.1 ID=mRNA_Ecto-sp13_S_contig59990.16577.1|Name=mRNA_Ecto-sp13_S_contig59990.16577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59990:16..183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGATGCCGTAGCAAACGCTGCTGCGTCGGGGACGCTCCTGGTAGACAA
GTCTCACTGGGGGGTGATCGGGGTAGAGGGAGAAGACAGGCTGAGATTCT
TGCACAGCCAGGGAACCAACGCTTTCGAGCGTGCTACAGCAGGTGAGCGA
GGGAGATGGATACAGTAA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59990:16..183+

>mRNA_Ecto-sp13_S_contig59990.16577.1 ID=mRNA_Ecto-sp13_S_contig59990.16577.1|Name=mRNA_Ecto-sp13_S_contig59990.16577.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59990:16..183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGATGCCGTAGCAAACGCTGCTGCGTCGGGGACGCTCCTGGTAGACAA
GTCTCACTGGGGGGTGATCGGGGTAGAGGGAGAAGACAGGCTGAGATTCT
TGCACAGCCAGGGAACCAACGCTTTCGAGCGTGCTACAGCAGGTGAGCGA
GGGAGATGGATACAGTAA