mRNA_Ecto-sp13_S_contig59977.16575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59977.16575.1
Unique NamemRNA_Ecto-sp13_S_contig59977.16575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59977.16575.1 vs. uniprot
Match: D8LDM2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDM2_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.450e-34
Identity = 67/70 (95.71%), Postives = 70/70 (100.00%), Query Frame = 1 
Query:    1 GVLEDVSSRGDTESRSGLAEVVSEISLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKVQ 210
            GVLEDVSSRGDTESRSGLAEVVSE+SLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTK++
Sbjct:  233 GVLEDVSSRGDTESRSGLAEVVSEVSLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKIE 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59977.16575.1 vs. uniprot
Match: L1I7G9_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7G9_GUITC)

HSP 1 Score: 52.0 bits (123), Expect = 4.530e-6
Identity = 26/70 (37.14%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 GVLEDVSSRGDTESRSGLAEVVSEISLALARRSLDWVASASELEHFNNRNVERAEATFSQYSIQLRTKVQ 210
            G +  ++   DTE+  GLA++VS+++LAL R+  DWV+++  LE    R+ +  E+ F Q+S+Q R K++
Sbjct:   97 GTISRIADEADTETEEGLADLVSDVALALLRKESDWVSAS--LETKVTRDEDEGESLFGQFSLQERAKIE 164
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59977.16575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDM2_ECTSI5.450e-3495.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
L1I7G9_GUITC4.530e-637.14Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59977contigEcto-sp13_S_contig59977:56..265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.6
Seed ortholog evalue2.9e-28
Seed eggNOG ortholog2880.D8LDM2
Model size210
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Protein of unknown function (DUF1517)
EggNOG OGs2QUI9@2759,COG4371@1
Cds size210
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.7214468-CDS-Ecto-sp13_S_contig59977:55..2651681463832.7214468-CDS-Ecto-sp13_S_contig59977:55..265Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59977 56..265 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59977.16575.1prot_Ecto-sp13_S_contig59977.16575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59977 56..265 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59977.16575.1

>prot_Ecto-sp13_S_contig59977.16575.1 ID=prot_Ecto-sp13_S_contig59977.16575.1|Name=mRNA_Ecto-sp13_S_contig59977.16575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
GVLEDVSSRGDTESRSGLAEVVSEISLALARRSLDWVASASELEHFNNRN
VERAEATFSQYSIQLRTKVQ
back to top

mRNA from alignment at Ecto-sp13_S_contig59977:56..265+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59977.16575.1 ID=mRNA_Ecto-sp13_S_contig59977.16575.1|Name=mRNA_Ecto-sp13_S_contig59977.16575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59977:56..265+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTCTGGAGGACGTCTCTTCTCGGGGAGATACCGAGTCCCGGAGCGG
GCTCGCCGAGGTGGTGAGTGAGATCAGCCTTGCCCTGGCCCGGAGGTCGC
TGGACTGGGTGGCGTCTGCGAGCGAGCTGGAACACTTCAACAACCGCAAT
GTGGAGAGAGCGGAGGCGACCTTCAGCCAGTACAGCATCCAGCTCAGGAC
AAAGGTACAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59977:56..265+

>mRNA_Ecto-sp13_S_contig59977.16575.1 ID=mRNA_Ecto-sp13_S_contig59977.16575.1|Name=mRNA_Ecto-sp13_S_contig59977.16575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59977:56..265+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGTTCTGGAGGACGTCTCTTCTCGGGGAGATACCGAGTCCCGGAGCGG
GCTCGCCGAGGTGGTGAGTGAGATCAGCCTTGCCCTGGCCCGGAGGTCGC
TGGACTGGGTGGCGTCTGCGAGCGAGCTGGAACACTTCAACAACCGCAAT
GTGGAGAGAGCGGAGGCGACCTTCAGCCAGTACAGCATCCAGCTCAGGAC
AAAGGTACAG
back to top