mRNA_Ecto-sp13_S_contig5992.16571.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5992.16571.1
Unique NamemRNA_Ecto-sp13_S_contig5992.16571.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A6H5KBU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU0_9PHAE)

HSP 1 Score: 807 bits (2085), Expect = 1.160e-283
Identity = 433/463 (93.52%), Postives = 438/463 (94.60%), Query Frame = 3 
Query:  183 MEILSGSASDRPRPPPGRRYFQRQASFSLSPSDMFLFRPPKPTYVATSWPGDLCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDHNRIGWRVACELYAKPFMEMACPAETNRALGIRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGGGGQACGGGSSQGEAAADFGTTRDQAGESCRPKDGGDEDGRDADASSAAGWAXXXXGAIPASPA--TTLFASPARPRSAMSVLSTSVLAVSRPGSPTPTAAPPAVAGEGXXXXXXXXXXXXXAKQRISGDRTGLSFWRWGGKPRTADE 1565
            MEILSG ASDRPRPPPGRRYFQRQASFSLSPSDMFLFRPPKPTYVATSWPG+LCVLGSSVCLALER GGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLH+TEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSL+LYRASAATTKYVALLFDSDHNRIGWRVACELYAKPFMEMACPAET RALGIRPMDVAKLSNFDPSGKATLILACAKAAWARRGVG GGQACGGGS QGEAAADFGTT DQAGESCRPKDGGDE G DADASS AGWA  XX          TTLFASPARPRSAMSVLSTSVLAVSRPGSPT  AAPPA+AGEG XXXXXXXXXXXXAKQRISGDRTGLSFWRWGGKPR+ DE
Sbjct:    1 MEILSGRASDRPRPPPGRRYFQRQASFSLSPSDMFLFRPPKPTYVATSWPGELCVLGSSVCLALERNGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHMTEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLELYRASAATTKYVALLFDSDHNRIGWRVACELYAKPFMEMACPAETKRALGIRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGVGGQACGGGSPQGEAAADFGTTGDQAGESCRPKDGGDEGGGDADASSTAGWAAAXXXXXXXXXXXXTTLFASPARPRSAMSVLSTSVLAVSRPGSPTLAAAPPALAGEGGXXXXXXXXXXXXAKQRISGDRTGLSFWRWGGKPRSGDE 463
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: D8LMJ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ7_ECTSI)

HSP 1 Score: 485 bits (1248), Expect = 2.300e-162
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 3 
Query:  183 MEILSGSASDRPRPPPGRRYFQRQASFSLSPSDMFLFRPPKPTYVATSWPGDLCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKY 905
            MEILSG ASDRPRPPPGRRYFQRQ SFSLSPSDMFLFRPPKPTYVATSWPG+LCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLM HDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKY
Sbjct:    1 MEILSGRASDRPRPPPGRRYFQRQTSFSLSPSDMFLFRPPKPTYVATSWPGELCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMAHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKY 241
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: D8LMJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ8_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 2.450e-103
Identity = 235/328 (71.65%), Postives = 236/328 (71.95%), Query Frame = 3 
Query:  981 MEMACPAETNRALGIRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGGGGQACGGGSSQGEAAADFGTTRDQAGESCRPKDGGDEDGR-DADASSAAGWAXXXXGAI--PASPATTLFASPARPRSA-MSVLSTSVLAVSRPGSPTPTAAPPAVAGEGXXXXXXXXXXXXXA-KQRISGDRTGL-SFWRWGGKPRTADEGGSGGRGGGIGVEEGCGGWGTGMVRVPSFEPPVKGSCANDGGGGVPRGGVERVRGVDRA------PAFETPVAAAAGXXXXXXXXXXXXXXXXXXXXXSGRKRSVDGEVGGTLGKKGGGGVVNPGKE 1928
            MEMACPAETNRALG+RPMDVAKLSNFDPSGKATLILACAKAAWARRGVG GGQA GGGS QGEAAADFGTT DQAGESCRPKDGGDE G  DADASS AGWA XXX     PASPATTLFASPARPRS  MSVLSTSVLAVSRPGSPT            XXXXXXXXXXX  A KQRISGDRT L SFWRWGGKPRT DEGGS       GVEEGCGGWGTGMVRVPSFEP VKGS AN                          PAFETPVAA   X                    SGRKRSVDGEVGGTLGKKGGGGVVNPGKE
Sbjct:    1 MEMACPAETNRALGMRPMDVAKLSNFDPSGKATLILACAKAAWARRGVGAGGQARGGGSPQGEAAADFGTTSDQAGESCRPKDGGDEGGGGDADASSTAGWAAXXXXXXXXPASPATTLFASPARPRSGTMSVLSTSVLAVSRPGSPTAAXXXXXXXXXXXXXXXXXXXXXEGAAKQRISGDRTALLSFWRWGGKPRTGDEGGSXXXXXXAGVEEGCGGWGTGMVRVPSFEPSVKGSGANXXXXXXXXXXXXXXXXXXXXXXXXXXPAFETPVAAXXXXSASNSGECLGGGSSSRS---SGRKRSVDGEVGGTLGKKGGGGVVNPGKE 325
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A7S3UX78_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX78_HETAK)

HSP 1 Score: 187 bits (475), Expect = 4.750e-48
Identity = 92/224 (41.07%), Postives = 131/224 (58.48%), Query Frame = 3 
Query:  285 FLFRPPKPTYVATSWPGDLCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLM-THDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDHNRIGWRV 953
            F FRPP P+Y   S+ G+LC L    CL L  +   S ++L+CH  S+D+G  R+ L+ L  +L  HVIGVEYPGYG   +  + +E ++N +V   +  I + M WP + ++V+GRS+GSGPA  LARE   G L L++ F  +  +A   VG  +A++   NQ+DN  A+ +  CP L LHG +D  VP  H  DLY A A++ K +A L    HN   W V
Sbjct:    4 FFFRPPSPSYDRNSFGGELCSLNGIDCLTLASVEHCSHIILYCHANSTDIGHCRKHLQALRSLLGVHVIGVEYPGYGTTYSSGKPSEDNINESVLKVYNFICKQMHWPPENIIVVGRSIGSGPATKLAREVPLGGLILISAFKSITSIARKFVGAGIANLVIANQYDNLTAIRQVHCPVLFLHGSEDDFVPFQHCQDLYNACASSRKTLAPLLGYGHNHFDWTV 227
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A7S3XMG0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XMG0_HETAK)

HSP 1 Score: 158 bits (399), Expect = 1.430e-38
Identity = 75/202 (37.13%), Postives = 125/202 (61.88%), Query Frame = 3 
Query:  288 LFRPPKPTY-VATSWPGDLCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGG----TLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLY 878
            +FRPP P+Y V     G L  LG   CL +E    +S +++ CHG ++D+G  R +LE L D L  +++ VEYPGYG  + ++ ++  ++ +V   + ++   +GWPA  ++VMGRS+GSGPA  LA   +PGAL L++ F+ + D+ E  VG      +  +F +N W+N + +++  CP L+LHG +D+++P +HS  L+
Sbjct:    1 MFRPPVPSYDVLDGLEGALHELGDVPCLIIESKTPSSIIMIHCHGNATDVGRIRETLELLADQLGVNIVAVEYPGYGCRSDEKPSKAGLDVSVLKVYSYLRNEVGWPACNILVMGRSIGSGPATSLASHNRPGALILVSLFSSIEDLIEQRVGHRATRVVTDVFRVNGWNNLEQISQVECPVLLLHGSQDKIIPCSHSTKLF 202
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A1R2ASI8_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ASI8_9CILI)

HSP 1 Score: 130 bits (327), Expect = 5.930e-30
Identity = 82/225 (36.44%), Postives = 123/225 (54.67%), Query Frame = 3 
Query:  288 LFRPPKPTYVATSWPGDLC--------VLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRV-AFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDHN 935
            LF  P P+Y+A ++PG+L          L S  CL L    G+SK ++F HG + D+G+    L  L   L  H+IGVEYPGYG+   + S ++    A+ V  FL  T   G     +++ GRS+GSGPA  LA + +P AL L++ +T + +  + IVG + A  F  +++ N   +A+  CP  +LHG KD ++P+ HS DL R   A    + L  + DHN
Sbjct:    7 LFPAPSPSYMADTFPGELIWIPQLKNKELPSIPCLYLSCQKGSSKSVIFFHGNAEDIGLAYELLNHLRVTLQVHIIGVEYPGYGIYEGNCSEKRIYEDAMNVFQFLLST---GIEQSDIIIFGRSIGSGPACYLASKVRPAALLLMSAYTSIRNAVKFIVG-SFAQYFIKDRFRNIDFIAKVKCPVFLLHGQKDTMIPYEHSQDL-RDKCAGPCSMILPVNMDHN 226
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BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A813MM43_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A813MM43_ADIRI)

HSP 1 Score: 130 bits (326), Expect = 2.030e-29
Identity = 77/249 (30.92%), Postives = 127/249 (51.00%), Query Frame = 3 
Query:  279 DMFLFRPPKPT-YVATSWPGDLCVLGSS---------VCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDES--NEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAAT-TKYVALLFDSDHNRIGWRVACELYAKPFME 986
            +  LF  P P+ Y  TS    L  + S           C+       A   +++CHG   D+G    +   L   L  H++  EYP YGL+    S  +E S+N   + A+  + + + WP +R+++ G S+GSG A  L+ E + GAL L +P+T + ++    +G  L+S+ + + W+N +A+    CPTL +HG +D ++P  HS  LY +  +T  K + LL D DHN I   +   +  KPF++
Sbjct:    4 EKILFPAPNPSHYTLTSHEEHLLWIPSKNYSNETPAIPCMLYSPSHEARAFIIWCHGNGCDIGSMDTTFTALSLRLRVHILAFEYPSYGLLKGITSTPSETSINKHAQCAYSFVRDTLKWPTNRIIIYGHSIGSGAACHLSAEQEVGALILQSPYTSISNLIREKIG-VLSSIISSSFWNNYEAMKHIACPTLFIHGERDNLIPSQHSQTLYDSFKSTGNKELVLLPDDDHNSISDPIL-NINIKPFID 250
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A6A7G9Q5_9CRUS (Alpha/beta superfamily hydrolase n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9Q5_9CRUS)

HSP 1 Score: 133 bits (335), Expect = 5.000e-29
Identity = 81/240 (33.75%), Postives = 126/240 (52.50%), Query Frame = 3 
Query:  288 LFRPPKPTYVATSWPGDLCVLGSSVCLA--LERIGG--------------------ASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLF--DSDHN 935
            LF  P   Y A S+P  LC +  + C     ER G                     + +++L+ HG   DLG T R +  L D L CHV+ +EYPGYG+     S E SVNA    AF  +   MG+  + +++ GRS+GSGP   LA   + G L L++PF+ + DM   + G   A++   +++ N +A+ +   P +++HGL D+++P++HS  L+RA+  T +  A+ F  D DHN
Sbjct:   15 LFPAPTTQYTANSFPRQLCWIPRNECDRPDSERFGEEPLSNKDDRVPCLWLPYHRPSKRIILYGHGNGEDLGNTHRFIRMLRDNLKCHVLAIEYPGYGINA-GVSTETSVNADFTTAFHFVLSDMGFRLEDILLFGRSIGSGPCCQLAARHKVGGLVLVSPFSSIRDMTRHLAGRVAAALV-ADRFSNIQAIMKVEVPLILIHGLADKLIPYSHSQLLFRAAEKTPRR-AIHFPEDMDHN 251
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A1R2CXL3_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CXL3_9CILI)

HSP 1 Score: 127 bits (319), Expect = 6.860e-29
Identity = 88/265 (33.21%), Postives = 131/265 (49.43%), Query Frame = 3 
Query:  288 LFRPPKPTYVATSWPGDLCV--------LGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNA-AVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDHNRIGWRVACELYAKPFMEMACPAET---NRALGIRPMDVAK 1046
            LF  P+P+Y A ++PG++          L S  CL L    G+SK ++F HG + D+G+    L  L   L  H+IGVEYPGYG+    E  EQ VN  AV V    +T   G   + +++ GRS+GSGPA  LA   QP +L L++ +T + D A   + G  A      ++ N   +    CP  +LHG KD ++P+ HS DL R   A    + L  + DHN   +          F ++A P         + I+P +++K
Sbjct:    7 LFPAPQPSYDADTFPGEIIWIPQLKFKHLPSIPCLYLSCQKGSSKTIVFFHGNAEDIGLAYELLNYLRINLQVHIIGVEYPGYGIY-EGECTEQRVNEDAVNVFQFLLTT--GIEPNEIILFGRSIGSGPACYLASTVQPASLLLMSAYTSIRD-AVKCIAGKFAQYLIKERFRNIDNITNVRCPVFLLHGQKDTMIPYGHSQDL-RDKCAGPCSMILPANMDHNEFDF----------FEDLALPFSAFLMQHGISIQPTNISK 256
[Close]
BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Match: A0A7S0TJG4_HEMAN (Hypothetical protein (Fragment) n=3 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0TJG4_HEMAN)

HSP 1 Score: 128 bits (322), Expect = 1.220e-28
Identity = 83/230 (36.09%), Postives = 128/230 (55.65%), Query Frame = 3 
Query:  285 FLFRPPKP-TYVATSWPGDLCVLGS-------SVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDCHVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGRSLGSGPAACL-----AREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWDNKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDHN 935
            FLF  P P T+   S+PGDL  L         S+ L  E   GAS  L++ HG + DLG++   L+   D L+ HVIGVEYPGYG +  +   E  VN   R AF  +T+ +  P  RV+V GRS+G+GPA  L     + +    AL L +P+  +  +A+ +VG  +A++  ++++DN+ A+   T PTL++HG +D+++   H+  LY    A  K + ++   DHN
Sbjct:   14 FLFAAPSPATFHQRSFPGDLFWLDDGQGGKFPSIFLCKE---GASCCLMYLHGNAEDLGLSHDLLKAFRDFLNVHVIGVEYPGYGPVPGNPC-EGGVNRHTRAAFNFVTQKLRIPPQRVIVFGRSVGTGPATNLVSLVNSSKKDVAALVLQSPYRSIKTLAKDLVGA-IANVI-MDRFDNEAAIPTCTSPTLIIHGRQDELISVKHASVLYDRCGAEAKCLEVIEGVDHN 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5992.16571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBU0_9PHAE1.160e-28393.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMJ7_ECTSI2.300e-16298.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMJ8_ECTSI2.450e-10371.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UX78_HETAK4.750e-4841.07Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3XMG0_HETAK1.430e-3837.13Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1R2ASI8_9CILI5.930e-3036.44Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A813MM43_ADIRI2.030e-2930.92Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A6A7G9Q5_9CRUS5.000e-2933.75Alpha/beta superfamily hydrolase n=1 Tax=Hirondell... [more]
A0A1R2CXL3_9CILI6.860e-2933.21Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S0TJG4_HEMAN1.220e-2836.09Hypothetical protein (Fragment) n=3 Tax=Hemiselmis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5992contigEcto-sp13_S_contig5992:1567..7915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score486.9
Seed ortholog evalue1.3e-134
Seed eggNOG ortholog2880.D8LMJ7
Model size2947
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.palmitoyl-(protein) hydrolase activity
EggNOG OGsCOG1073@1,KOG1552@2759
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-05_003000.1
Cds size1749
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5992.16571.1prot_Ecto-sp13_S_contig5992.16571.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5992 1749..6899 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.2522864-UTR-Ecto-sp13_S_contig5992:1566..17481681463832.2522864-UTR-Ecto-sp13_S_contig5992:1566..1748Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5992 1567..1748 +
1681463832.344335-UTR-Ecto-sp13_S_contig5992:6899..79151681463832.344335-UTR-Ecto-sp13_S_contig5992:6899..7915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5992 6900..7915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.2690818-CDS-Ecto-sp13_S_contig5992:1748..19161681463832.2690818-CDS-Ecto-sp13_S_contig5992:1748..1916Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 1749..1916 +
1681463832.2781212-CDS-Ecto-sp13_S_contig5992:2347..24421681463832.2781212-CDS-Ecto-sp13_S_contig5992:2347..2442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 2348..2442 +
1681463832.2872667-CDS-Ecto-sp13_S_contig5992:3033..31351681463832.2872667-CDS-Ecto-sp13_S_contig5992:3033..3135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 3034..3135 +
1681463832.296257-CDS-Ecto-sp13_S_contig5992:3906..40421681463832.296257-CDS-Ecto-sp13_S_contig5992:3906..4042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 3907..4042 +
1681463832.304933-CDS-Ecto-sp13_S_contig5992:4382..44871681463832.304933-CDS-Ecto-sp13_S_contig5992:4382..4487Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 4383..4487 +
1681463832.3136601-CDS-Ecto-sp13_S_contig5992:4866..49801681463832.3136601-CDS-Ecto-sp13_S_contig5992:4866..4980Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 4867..4980 +
1681463832.3224247-CDS-Ecto-sp13_S_contig5992:5300..54041681463832.3224247-CDS-Ecto-sp13_S_contig5992:5300..5404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 5301..5404 +
1681463832.3314903-CDS-Ecto-sp13_S_contig5992:5974..68991681463832.3314903-CDS-Ecto-sp13_S_contig5992:5974..6899Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5992 5975..6899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5992.16571.1

>prot_Ecto-sp13_S_contig5992.16571.1 ID=prot_Ecto-sp13_S_contig5992.16571.1|Name=mRNA_Ecto-sp13_S_contig5992.16571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=583bp
MEILSGSASDRPRPPPGRRYFQRQASFSLSPSDMFLFRPPKPTYVATSWP
GDLCVLGSSVCLALERIGGASKVLLFCHGTSSDLGMTRRSLETLGDMLDC
HVIGVEYPGYGLMTHDESNEQSVNAAVRVAFLHITEVMGWPADRVVVMGR
SLGSGPAACLAREFQPGALFLLAPFTGVGDMAESIVGGTLASMFNLNQWD
NKKAVAETTCPTLVLHGLKDQVVPHTHSLDLYRASAATTKYVALLFDSDH
NRIGWRVACELYAKPFMEMACPAETNRALGIRPMDVAKLSNFDPSGKATL
ILACAKAAWARRGVGGGGQACGGGSSQGEAAADFGTTRDQAGESCRPKDG
GDEDGRDADASSAAGWAAAAAGAIPASPATTLFASPARPRSAMSVLSTSV
LAVSRPGSPTPTAAPPAVAGEGGAIEGEAAAAEGAAKQRISGDRTGLSFW
RWGGKPRTADEGGSGGRGGGIGVEEGCGGWGTGMVRVPSFEPPVKGSCAN
DGGGGVPRGGVERVRGVDRAPAFETPVAAAAGAAASSASSSGNCLGGGSS
SRSSGRKRSVDGEVGGTLGKKGGGGVVNPGKE*
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mRNA from alignment at Ecto-sp13_S_contig5992:1567..7915+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5992.16571.1 ID=mRNA_Ecto-sp13_S_contig5992.16571.1|Name=mRNA_Ecto-sp13_S_contig5992.16571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5992:1567..7915+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAATCGAATAATCTTGGAGCCTTCGCCGGACTGCTGCGGAAGAGAGA
GGGAGAGAAAGACGCGATAAGGGATACACAGCTGACCAACGCAGAGAAAG
ACCCCACGGGGGCAAAACGGAAAGCTATTGTTTCCTGGCCAAGGCCGGAG
AAGGCTTCATCTAAGCACTTGTCATAAACTAGATGGAGATTCTTTCGGGA
AGCGCAAGCGACCGTCCCCGCCCTCCACCCGGCAGGCGTTATTTTCAGCG
CCAGGCGTCGTTCAGCCTGTCGCCCTCCGACATGTTTCTCTTCCGCCCGC
CCAAGCCGACCTATGTGGCCACCAGCTGGCCGGGAGATCTTTGCGTTCTG
GTGAGAGGCAAAAATAGGAAAGACAGCAGTTTCTGCCAGTCAGTCAGACA
AAGCAGACACACAAGACTGACATCCAGAGATGGAGCCATACGCGGAAATG
AAGCAGATACCGGTAGATATATACAGAGAGATAGATAGATAGACCCAAGA
TAGATGTTTAGATAGATAGATACACAGTCGAGAGAGGGGCAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGCGAGACACACAGAGAG
AGAAAGAGAGAGAGAAGGAATCATCCCGTTGCCCACCGTGGTGAGTGGTG
GTCTGAGCACCCTTCTCGATCCTTCCTTCCGGGGGCAACCATCAACATCA
CTCGATCGTGCTCTGTGAATCATGCACGTCATTGACCTGTCTTTGTGCTC
CTCTTTTCTTTTGTGTTTTTGTGTGCGTCAGGGTTCGTCGGTGTGCCTGG
CGCTGGAGCGAATCGGCGGGGCCTCAAAGGTGCTGCTCTTCTGCCACGGC
ACCTCGTCCGACCTCGGCATGACCAGGTGAGCAGCCGGCGGGTCTGACCT
GTGCCTGCCGCCCGAATGCGCGACAGAGAACGTCGAGTTTTGCCGAGAGT
ACGTGCTGTGCCCTGTACAGGAACAGGTCAAACACGTTATTTGCTTTGTA
ACAGCCCCCCCCCCCCGCCCCAGATGGCAGGCAGTGTGATATCGAAGAGA
CCGGAGGATAAGGCATGTATATCTCCTGGTCAGCAGCCGGTCTCGTAAGG
GCTTGCATGATTAGTGGTCTTGTCACAAGAGCCATTTTAGTCGACCTCGA
CCCTTCCCCCCAAGGTGTTCATGTCGTGGGGAGAGGCCGCTCTGGAAGAC
TGATCTGATCTCCAGTACTCTCTCGGGCAGGAATGGAATATGAGTGCAGG
TGGACTGACCCCGCTTCAACAACCTGGATTGCTCGTCGACCGGTCGTACA
CCCCACTACACCCGCACGATGGCCAAGGGAAGTGGGTTATACGTGACCTT
CGCTGAAAATAGAAGGAGGGGAGACTGCCTCGCCCCGAACAACGGAACCC
ATCTATCGATTATTTCAGTCATGGGGGTGTGTCGTGTTTGCGCGCCGACG
CTCGTTGTTTTCTTTAGGCGGAGCCTTGAGACGCTTGGGGATATGTTGGA
CTGTCACGTCATCGGAGTGGAGTACCCAGGGTACGGCCTCATGACCCACG
ACGAGTCGAACGAGCAGAGGTGAGAGGGAGCGACGGACCGCGACGAATGC
GCGCATCATGCCGATGGCGTCGGTGGTGATGTTGATGGTGGTGGTGATGT
TATTGGTGGTGGGTGGTGTTGCTGCTGTTGTTGGTGCTGCGGCGGCGGTG
GTGGTGGTCGTGGTGGTTGCTGCTGTTGTTGCTGCTGTTGCTGCTGCTGC
TGCTGCAATTGTTGTTGGCAGCGCTTGGTGTGTCGGTGTTGGTTGCGATG
CCGGTGCGCTATTTCTCGGCATGCAGGTTGGGTTGAGGCTACCAAGCAGG
GGCACTGTTGACGAGTCGTTCACGAAGAGCTGAAATGAACCACCACCAGG
TTGTTGTGGTTGTTGTTGCCAGGGACCTTTTCGTGAGGTTGGGCATGCCG
AGGCTGGCGGGCTGACTTTTTTTTTCATTCGATATTACAACGAGTTTTGT
TATTAATTCCTCTGTACTAATGACTACAGGCATGTGCCTAAAGACATGTT
GGTTGGTACAATAAGGCCAGTTACGAGCACTGCCGTTCACTAGGGGTAAA
TGCAACACCAGCAGCACTGTGAAGAGCCACGACCGAACGCAACATGCTAC
AGCACTGATGCCCACTTCGATGGTCACCCCCGATTGCCGGTGTGTTTTGT
CTACCTCTCTGCTTGCTGCCGCACGCGCTCGCGCACGTGTTTGTGTCTCT
TTTTATTTTCTTTGTTCTTGTTGCTTTTTTTCGGGCGGTGGCCGCGGCGG
TCAAACAAACGCGTGCAATTACAACGCGCCATCAACACAGCGTCAACGCC
GCGGTGAGGGTGGCATTCCTGCACATAACGGAAGTCATGGGATGGCCGGC
GGATCGCGTAGTGGTGATGGGCAGGTCTCTGGGCTCGGGCCCGGCGGCAT
GCCTCGCCAGGGAGTTCCAGCCGGGGGTGAGTGGCCGTCAACAGCAGCGT
GGTTCATTGGCTGCAATCGTCATTCTTGGTGTTGCTGTTGCAACGGCAGG
AACACCCGGCTCGAGAAAAACACGTGGCGTGAATTCACCCTCGCCAATCG
CTGTAACACACTCTGTATGTATTATATGTAGTGCGCTACCACGAAGGTGC
GGTCCGTTGTTGTTGCTGTTTGCATCGCACGTCGATTTACGAACGTGCAG
AGCGGGGACGGAAAGGGCGTCGCGTGCTGTACATTCGGACCCGTCACCCT
GTCCCCTCTGTGTTATCTGCGATAACGGCGGTGGTGGTGGTTGCGGTGAT
GATGGCCTCGTCGCAGGCGCTGTTCCTGCTGGCTCCGTTCACGGGGGTGG
GGGACATGGCCGAGAGCATCGTCGGGGGCACGCTGGCCTCCATGTTCAAC
CTGAACCAGTGGGACAATAAGGTCTGCGTACGGTATCGTTGTGATTTGAT
TTTATCCACTTCCGGGATCTTGGCGCCAAATGATTTCGAGCTTTGACGCT
ATGCGAGTCCCGCCGACCCAATATTTCGATGAATCGAAACACGATGGCCG
GCTATTCTGACCGCGCGTCCATCCGCGATTTCCAAGCCTGTGGATAGCTT
CGATACATCAAGACGGTGGACGAGTCCCACTGACCCAATCTTTCGAGCTT
CCCAGCATTTCTGAACGCGCCCCCATCCGCTGTTTCCAAGCGTGGAGGCG
TGTACCTCGAAGCCCGCCGTTTCCACGCGTGTGGTCAACGTACTCCGTGT
TCCGATCTTGTCTGTTGTTCAATTTGACGATTTTGTTCCCTTGGCGACAG
AAAGCGGTTGCTGAGACGACCTGCCCCACCCTCGTTCTACACGGGCTGAA
GGACCAAGTCGTGCCGCACACCCACAGCCTGGACCTGTACCGAGCTAGCG
CCGCCACCACGAAGGTGGCCATGGCCGCTCGATCTTTCGATCGGTTCACT
TTTATTTTGTTTTTCTTGTGTTTCGTCGTTGCTAGCCGTTCCTCTGTCGT
GTTTGCTCCGTTTAGTTCATTGGTGAAGATATTGTTTTTGATGATGATGA
TGATTATAGTTGTTTCTTGTATGAGTGTTTTTTATACGTGTAAAAATGGT
GTTTTTGTTTTTTGTCACGAGCGTTCCGCCGCAATGGCAACCTCAACACA
CTCGCGACCAATACCCCCCCCCCCTACCCCCCTCTCGTCCCTCTGGTGGC
GGTGCCCCCCTCGTCCTTCTTTTTTACCGCACAGTACGTGGCCCTGCTGT
TTGATAGCGACCACAACCGAATAGGCTGGCGGGTGGCCTGCGAGTTGTAC
GCAAAGCCGTTCATGGAGATGGCTTGCCCGGCAGAAACGTGAGAGACAAT
CAATCCCTAGGGCTTCGCTCCCGCTGTCTGTGTGCCAAAGCGAGCACGCC
TTCGTCCTGCGACGAACAGTCTGGACACCTCAATGAAGCGAAGTCGGAAG
AGAGAAAGCAGAAAGATTATCCTAGACCATACTACCCCACCCTGCCCGTA
CTATTCGACTATAATAAAGATTATGCTGTGGTGTTACGAAATCAGATGCA
TCGCGAAGGAAACATGATACATGTCCGCGCACGACTCTCTCTTCTATGTG
TTTAGGGGTGCCAACAACTGACACTTACTTGCAAGCTTGAAGTGACCCAG
TCAAGGCCAGTGGCCGCCGCCTTGGAAATAGGGTGAAAACCTCAAGTTTT
GGCGGTCATTTGCAGCCCACAAGAGGAACTAAGAACCTCATCCTCGATGA
GAGCTAGCGGTTTGTTCATGTGGGTGCTATCTGTGGTCTATAGGAGACCC
CCCCCCCAGCCACAGCCCGAATCGGGCACCGATGTTTCCTTTCAGACGTC
GTGGAAAAATCTGCGTTACGGACGCGTCCGTATCCATGCCTGTGCAATGC
AACAACAGGAACCGAGCCCTAGGCATCCGACCGATGGACGTGGCGAAGCT
CTCGAACTTCGACCCCTCGGGGAAGGCCACCCTTATCTTGGCCTGCGCCA
AGGCCGCGTGGGCGCGGCGGGGGGTTGGGGGGGGGGGGCAGGCGTGCGGC
GGAGGCTCATCGCAGGGAGAAGCGGCGGCGGACTTCGGCACAACAAGGGA
TCAGGCTGGGGAGTCTTGTCGGCCGAAGGACGGCGGAGACGAGGACGGCC
GCGACGCCGATGCTTCCTCGGCAGCGGGGTGGGCGGCGGCGGCGGCGGGT
GCTATTCCGGCGTCTCCTGCTACGACGCTCTTTGCTTCTCCCGCTCGTCC
GAGGTCGGCCATGTCGGTGCTGTCAACCTCGGTGCTGGCGGTGTCTCGAC
CGGGATCACCAACGCCTACAGCGGCGCCGCCAGCGGTCGCGGGGGAAGGA
GGGGCGATCGAGGGGGAGGCAGCAGCAGCAGAAGGGGCAGCGAAGCAGAG
AATAAGCGGCGATCGAACGGGGTTGTCGTTCTGGCGCTGGGGGGGCAAGC
CCCGCACCGCCGATGAGGGCGGTAGCGGCGGAAGGGGAGGGGGCATCGGC
GTGGAGGAAGGGTGTGGAGGGTGGGGTACTGGGATGGTTCGGGTGCCGTC
CTTCGAACCGCCGGTCAAAGGAAGCTGCGCAAACGACGGCGGCGGCGGCG
TGCCGAGGGGGGGTGTAGAGAGAGTTCGCGGGGTGGACCGGGCGCCCGCA
TTCGAAACGCCGGTCGCAGCAGCAGCAGGAGCAGCAGCATCTAGCGCAAG
TAGCTCCGGTAATTGCTTAGGAGGCGGTAGTAGCAGCCGCAGCAGCGGCA
GAAAAAGGAGCGTGGACGGAGAGGTCGGCGGCACACTCGGCAAGAAAGGC
GGCGGCGGTGTCGTGAATCCCGGCAAGGAGTAGGAGGCAGCCGAAGGGGC
GGGATGGCGTGGGGAGTCAAGGGGCACGCGCGTATGGGAATTTATTTGGC
CCTGTTTCCCAGGCAATCCGTTTGCGACAGACAGACAAGAAAGGTCGGGG
GCTTCGTAGACGAGACGCAGCACCCCGCGGTGCAATAGAAAAAAACGGAG
GTGACGGCCTGAGATAATTGTAAATCTGTTTTTAACCCACAGGCCCAGGG
TAGCTCCGGCAAGGCGTGTAGCGTGCCTCGGTTTCTTTCTTCCCAGGAGT
CTTGTGGTGACGCGGCACACTGTTCGTAGCAAGCACGTTGATTTCTTGAG
TGCAAGTGTATTGCCGGTTTTGTCCTGCTCTGAAGCCGACCTCGGTTTTT
GTCCAAGAGGTTAGGGTGAAGTGGCACACCGTCTGTAACAAGCACGTTGA
CTTGAGGGGAAGTCTCTTGCCGGGGTTTAACTTGCTCTGAAGCCCGCCTC
GGTTCGTGCCAAGAAGGTTAGTGCAAGGCGGCACCCCGTTCGTAAAACGC
ACGTCGGTTTGAGTGCACGAGTAATGCCGGTGTTGTCTTGCTCTGAAGCC
CGCCTCGCCAAGAGGTTACACCAATGTGAGGCGGCACACCACAAAACAGA
GTTTTTGTCGTTTGTCAGGCTGGCGGTATAGTCTAGTGTTGATACGGGTG
CAACCCTGTCTGGGGGAACCGACGTCTACGTTTTGTCACCCGTGTCGTGG
TCCTTGTGCAAATGGTGCGTCGCAGGAAGGATCTGGGCAAAAGGCGCACG
GCATCACTTCCATTTTGGCGGGGCGTAGAGCCGTGCGGTTTGTTGTCATT
CGTAGCTTGCTGACCGCACCACACGACGACGGCGTCGTGGTCCGGACATC
GCGGCGAGTCGTGCGTGCTGCTTTCGTGACAGCAGGAGAGAAAGGTGGTG
TGTAACGCCCGCGTCGACGAGGGTATCATTCTGCAAGCGGACTCGATTGT
TCTGGTCGAAACAAACGACGCCGTGATTGTTGGCTGGGAATTTAGCAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5992:1567..7915+

>mRNA_Ecto-sp13_S_contig5992.16571.1 ID=mRNA_Ecto-sp13_S_contig5992.16571.1|Name=mRNA_Ecto-sp13_S_contig5992.16571.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1749bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5992:1567..7915+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATTCTTTCGGGAAGCGCAAGCGACCGTCCCCGCCCTCCACCCGG
CAGGCGTTATTTTCAGCGCCAGGCGTCGTTCAGCCTGTCGCCCTCCGACA
TGTTTCTCTTCCGCCCGCCCAAGCCGACCTATGTGGCCACCAGCTGGCCG
GGAGATCTTTGCGTTCTGGGTTCGTCGGTGTGCCTGGCGCTGGAGCGAAT
CGGCGGGGCCTCAAAGGTGCTGCTCTTCTGCCACGGCACCTCGTCCGACC
TCGGCATGACCAGGCGGAGCCTTGAGACGCTTGGGGATATGTTGGACTGT
CACGTCATCGGAGTGGAGTACCCAGGGTACGGCCTCATGACCCACGACGA
GTCGAACGAGCAGAGCGTCAACGCCGCGGTGAGGGTGGCATTCCTGCACA
TAACGGAAGTCATGGGATGGCCGGCGGATCGCGTAGTGGTGATGGGCAGG
TCTCTGGGCTCGGGCCCGGCGGCATGCCTCGCCAGGGAGTTCCAGCCGGG
GGCGCTGTTCCTGCTGGCTCCGTTCACGGGGGTGGGGGACATGGCCGAGA
GCATCGTCGGGGGCACGCTGGCCTCCATGTTCAACCTGAACCAGTGGGAC
AATAAGAAAGCGGTTGCTGAGACGACCTGCCCCACCCTCGTTCTACACGG
GCTGAAGGACCAAGTCGTGCCGCACACCCACAGCCTGGACCTGTACCGAG
CTAGCGCCGCCACCACGAAGTACGTGGCCCTGCTGTTTGATAGCGACCAC
AACCGAATAGGCTGGCGGGTGGCCTGCGAGTTGTACGCAAAGCCGTTCAT
GGAGATGGCTTGCCCGGCAGAAACGAACCGAGCCCTAGGCATCCGACCGA
TGGACGTGGCGAAGCTCTCGAACTTCGACCCCTCGGGGAAGGCCACCCTT
ATCTTGGCCTGCGCCAAGGCCGCGTGGGCGCGGCGGGGGGTTGGGGGGGG
GGGGCAGGCGTGCGGCGGAGGCTCATCGCAGGGAGAAGCGGCGGCGGACT
TCGGCACAACAAGGGATCAGGCTGGGGAGTCTTGTCGGCCGAAGGACGGC
GGAGACGAGGACGGCCGCGACGCCGATGCTTCCTCGGCAGCGGGGTGGGC
GGCGGCGGCGGCGGGTGCTATTCCGGCGTCTCCTGCTACGACGCTCTTTG
CTTCTCCCGCTCGTCCGAGGTCGGCCATGTCGGTGCTGTCAACCTCGGTG
CTGGCGGTGTCTCGACCGGGATCACCAACGCCTACAGCGGCGCCGCCAGC
GGTCGCGGGGGAAGGAGGGGCGATCGAGGGGGAGGCAGCAGCAGCAGAAG
GGGCAGCGAAGCAGAGAATAAGCGGCGATCGAACGGGGTTGTCGTTCTGG
CGCTGGGGGGGCAAGCCCCGCACCGCCGATGAGGGCGGTAGCGGCGGAAG
GGGAGGGGGCATCGGCGTGGAGGAAGGGTGTGGAGGGTGGGGTACTGGGA
TGGTTCGGGTGCCGTCCTTCGAACCGCCGGTCAAAGGAAGCTGCGCAAAC
GACGGCGGCGGCGGCGTGCCGAGGGGGGGTGTAGAGAGAGTTCGCGGGGT
GGACCGGGCGCCCGCATTCGAAACGCCGGTCGCAGCAGCAGCAGGAGCAG
CAGCATCTAGCGCAAGTAGCTCCGGTAATTGCTTAGGAGGCGGTAGTAGC
AGCCGCAGCAGCGGCAGAAAAAGGAGCGTGGACGGAGAGGTCGGCGGCAC
ACTCGGCAAGAAAGGCGGCGGCGGTGTCGTGAATCCCGGCAAGGAGTAG
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