mRNA_Ecto-sp13_S_contig5990.16569.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5990.16569.1
Unique NamemRNA_Ecto-sp13_S_contig5990.16569.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5990.16569.1 vs. uniprot
Match: A0A6H5L7M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7M6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.090e-30
Identity = 53/82 (64.63%), Postives = 66/82 (80.49%), Query Frame = 1 
Query:  226 FTASGPIIRMKCGIRLPACNSTCNPSTDLPISCNNKVTPHLHDENDMVPTLFTIIQPHMAVDCGPHTEDGKKIPSAISIGTK 471
            F+ASGP++ M+C +  P CNST NP  +LPI+C NK+TPHLH + DM+P LF  IQPHMAVDCG HT+DG +IPSA+SIGTK
Sbjct:    4 FSASGPVVCMRCCLGTPECNSTSNPCAELPIACTNKITPHLHRDYDMIPKLFAAIQPHMAVDCGLHTKDGIQIPSAMSIGTK 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5990.16569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L7M6_9PHAE2.090e-3064.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5990contigEcto-sp13_S_contig5990:4356..5902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size517
Hectar predicted targeting categoryother localisation
Exons3
Cds size435
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.0276747-UTR-Ecto-sp13_S_contig5990:4355..43651681463832.0276747-UTR-Ecto-sp13_S_contig5990:4355..4365Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5990 4356..4365 -
1681463832.0742528-UTR-Ecto-sp13_S_contig5990:5830..59021681463832.0742528-UTR-Ecto-sp13_S_contig5990:5830..5902Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5990 5831..5902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463832.0391917-CDS-Ecto-sp13_S_contig5990:4365..44011681463832.0391917-CDS-Ecto-sp13_S_contig5990:4365..4401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5990 4366..4401 -
1681463832.0501494-CDS-Ecto-sp13_S_contig5990:4694..50711681463832.0501494-CDS-Ecto-sp13_S_contig5990:4694..5071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5990 4695..5071 -
1681463832.0614398-CDS-Ecto-sp13_S_contig5990:5808..58301681463832.0614398-CDS-Ecto-sp13_S_contig5990:5808..5830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5990 5809..5830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5990.16569.1prot_Ecto-sp13_S_contig5990.16569.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5990 4366..5830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5990.16569.1

>prot_Ecto-sp13_S_contig5990.16569.1 ID=prot_Ecto-sp13_S_contig5990.16569.1|Name=mRNA_Ecto-sp13_S_contig5990.16569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MFDSQVHEHGPVKVTPRRHEQHQYRPGNPTDDNLWKHCQPFQGHVLRCHL
CFTASGPIIRMKCGIRLPACNSTCNPSTDLPISCNNKVTPHLHDENDMVP
TLFTIIQPHMAVDCGPHTEDGKKIPSAISIGTKALEEVLMCEDA*
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mRNA from alignment at Ecto-sp13_S_contig5990:4356..5902-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5990.16569.1 ID=mRNA_Ecto-sp13_S_contig5990.16569.1|Name=mRNA_Ecto-sp13_S_contig5990.16569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1547bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5990:4356..5902- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGTGCCGTCCACGCCCAAGAAAGCTCGTGGACGTCCCACCAAGGGTT
CTTCCGGGAGTTCTCCCACCACATGTTCGACTCCCAAGTCCACGGTACGG
CTTACCAACACCTCCTCCGTCGCATTACCCTTTGGGTCATTTCCCTTCAC
TACCCTCCGTGCTGACACGCCCTTTCCTTCTTTCCTGCCCTACTCCTTCC
ACCCTCCTGCATATAGTTCTCCGTCCTGTTCCGCTGCAGTTCTTTCCATC
TGCAACACAACAAGACTCCCGCGTTTCCTCCTTATCGTGCGTTTCACTCC
GTGTCCATCCCCATCCTCCCCCACTCCCTTTCAGTCACCCAAGACCAACA
AGAAGATTGCTCGCGCCAACAAAACTTCTTCCTCCAATGCTGCTTCCGCC
AAGTCTCACTCGACCCCCATACGCTACAAACCCAGCATTTCAGCCCCTTC
GTACCATGCCTTCTCCATTTTTTTTGTTTTTTTTTCGAAATATGACTCAA
CGAATCCATCTCTATCTAACCAAAGAGTCTTAACATAGATTAGCAATGAA
TCCATAGCGTTTTGCTTCCTCCTTCTACTCGTCGCCTCCCCCCCCCCTCT
CCCGTCGTCTGTAGTCACTACCTACCGCTTCGCGTCCTACCATACTCATC
CTCCCATTCCCTTTTTTCACCACCTTTTTCTCCTCAAATTTTCTTCTTTC
CAATTGTCTGCTTCTTCTCGACTTCGTCAACCCTCTCTCTTTTCACTTCC
ATCTTCGTCCGTCCTGTACACACAATAACCATCACCCTCTTACCGCCCAT
TCTTTCCCACCTGCCTTTCGCTTTATCCCAGAACATGGCCCGGTAAAAGT
CACTCCTCGCCGCCATGAACAACACCAATACCGCCCCGGAAATCCCACCG
ACGACAATTTATGGAAACATTGTCAACCCTTCCAAGGTCATGTCCTTCGA
TGTCATCTCTGCTTCACCGCGTCGGGGCCCATAATTCGGATGAAGTGCGG
CATACGTTTACCCGCATGCAATTCTACCTGCAACCCATCCACGGATCTTC
CGATTAGCTGCAACAACAAGGTGACACCTCACCTCCACGATGAAAACGAC
ATGGTCCCAACCTTGTTTACCATCATCCAGCCACACATGGCCGTCGACTG
CGGTCCGCACACCGAGGATGGCAAAAAAATACCTTCGGCCATCTCCATCG
GCACTAAGGTGTGTACTATTTTTTACTACACGTTCAACTTGCGTCCTTTC
CTACCATCTATTTGCCTTGCGCATATCTTCCTTTGCCAACCCCGTTTCCT
TCACCCCTCCATCCCATACATCACCCCACCCGTGTGCAACTGCCATCCCT
TCTCCTTCATCTCTTACCCCGTAGGATAACCTTCCTACCGCCTTCATGTT
CTACATACTTCGTGCTACGTCCACCTTTGTACGGACCATATTTCATCCCC
ACCTTTCCAAACTCCGCCTCCGTCCTCGTACCCTGTTTAACGGTCGCGCA
GGCTCTTGAAGAGGTATTGATGTGTGAAGATGCGTAAGAGTTCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5990:4356..5902-

>mRNA_Ecto-sp13_S_contig5990.16569.1 ID=mRNA_Ecto-sp13_S_contig5990.16569.1|Name=mRNA_Ecto-sp13_S_contig5990.16569.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5990:4356..5902- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGACTCCCAAGTCCACGAACATGGCCCGGTAAAAGTCACTCCTCG
CCGCCATGAACAACACCAATACCGCCCCGGAAATCCCACCGACGACAATT
TATGGAAACATTGTCAACCCTTCCAAGGTCATGTCCTTCGATGTCATCTC
TGCTTCACCGCGTCGGGGCCCATAATTCGGATGAAGTGCGGCATACGTTT
ACCCGCATGCAATTCTACCTGCAACCCATCCACGGATCTTCCGATTAGCT
GCAACAACAAGGTGACACCTCACCTCCACGATGAAAACGACATGGTCCCA
ACCTTGTTTACCATCATCCAGCCACACATGGCCGTCGACTGCGGTCCGCA
CACCGAGGATGGCAAAAAAATACCTTCGGCCATCTCCATCGGCACTAAGG
CTCTTGAAGAGGTATTGATGTGTGAAGATGCGTAA
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