prot_Ecto-sp13_S_contig599.16566.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig599.16566.1
Unique Nameprot_Ecto-sp13_S_contig599.16566.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length319
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig599.16566.1 vs. uniprot
Match: D7G1Y8_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y8_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.520e-193
Identity = 301/318 (94.65%), Postives = 305/318 (95.91%), Query Frame = 0 
Query:    1 MVWFGLGRRKPADEGSPSSPTLSTDGINMSTGGGTQAASESTARSSTPMAEPVGGPKTTLNAPAAAMRADACDNASPVEEQQEQQQGEEVADSSPRYALRLKAAFLDTVATAKRAPETLEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRQKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIGATALRRSIAGIDAQLRTWPTAAADSEDETDTPELASSRRTP 318
            M WFGLGRRKPADE SPSSPTLSTDGINMSTG G QAASEST RS TPMAEPVG PKTTLNAPAAAMRADACD ASPVEEQQEQQQGE VADSSP YA RLKAAFLDTVATAKRAPET+EEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALR+KKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIG TALRRSIAGIDAQ+RTWPTAAADSEDETDT ELASS+RTP
Sbjct:    1 MGWFGLGRRKPADESSPSSPTLSTDGINMSTGCGAQAASESTGRSCTPMAEPVGAPKTTLNAPAAAMRADACDKASPVEEQQEQQQGEGVADSSPGYAHRLKAAFLDTVATAKRAPETMEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRRKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIGETALRRSIAGIDAQVRTWPTAAADSEDETDTTELASSQRTP 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig599.16566.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y8_ECTSI1.520e-19394.65Similar to mitochondrial import inner membrane tra... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 252..272
NoneNo IPR availablePFAMPF02466Tim17coord: 139..235
e-value: 1.4E-8
score: 35.1
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 208..229
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 235..252
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..207
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 253..318
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 230..234
NoneNo IPR availableTMHMMTMhelixcoord: 208..230
NoneNo IPR availableTMHMMTMhelixcoord: 234..253

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig599contigEcto-sp13_S_contig599:11050..15226 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig599.16566.1mRNA_Ecto-sp13_S_contig599.16566.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig599 11050..15226 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig599.16566.1 ID=prot_Ecto-sp13_S_contig599.16566.1|Name=mRNA_Ecto-sp13_S_contig599.16566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=319bp
MVWFGLGRRKPADEGSPSSPTLSTDGINMSTGGGTQAASESTARSSTPMA
EPVGGPKTTLNAPAAAMRADACDNASPVEEQQEQQQGEEVADSSPRYALR
LKAAFLDTVATAKRAPETLEEAMAVIKGERAVKPDYGRAVGTVSAAFAGG
CAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVME
ALRQKKDFVGGTVGGALAGMAYGVSGGVAAARSGLFYGVWLGGVFGLFRN
HVASLREQARLAEEDERLAQEERDAIGATALRRSIAGIDAQLRTWPTAAA
DSEDETDTPELASSRRTP*
back to top