mRNA_Ecto-sp13_S_contig599.16566.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig599.16566.1
Unique NamemRNA_Ecto-sp13_S_contig599.16566.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig599.16566.1 vs. uniprot
Match: D7G1Y8_ECTSI (Similar to mitochondrial import inner membrane translocase,TIM17/22/23-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y8_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.520e-193
Identity = 301/318 (94.65%), Postives = 305/318 (95.91%), Query Frame = 1 
Query:    1 MVWFGLGRRKPADEGSPSSPTLSTDGINMSTGGGTQAASESTARSSTPMAEPVGGPKTTLNAPAAAMRADACDNASPVEEQQEQQQGEEVADSSPRYALRLKAAFLDTVATAKRAPETLEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRQKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIGATALRRSIAGIDAQLRTWPTAAADSEDETDTPELASSRRTP 954
            M WFGLGRRKPADE SPSSPTLSTDGINMSTG G QAASEST RS TPMAEPVG PKTTLNAPAAAMRADACD ASPVEEQQEQQQGE VADSSP YA RLKAAFLDTVATAKRAPET+EEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALR+KKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIG TALRRSIAGIDAQ+RTWPTAAADSEDETDT ELASS+RTP
Sbjct:    1 MGWFGLGRRKPADESSPSSPTLSTDGINMSTGCGAQAASESTGRSCTPMAEPVGAPKTTLNAPAAAMRADACDKASPVEEQQEQQQGEGVADSSPGYAHRLKAAFLDTVATAKRAPETMEEAMAVIKGERAVKPDYGRAVGTVSAAFAGGCAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVMEALRRKKDFVGGTVGGALAGMAYGXXXXXAAARSGLFYGVWLGGVFGLFRNHVASLREQARLAEEDERLAQEERDAIGETALRRSIAGIDAQVRTWPTAAADSEDETDTTELASSQRTP 318
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig599.16566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G1Y8_ECTSI1.520e-19394.65Similar to mitochondrial import inner membrane tra... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig599contigEcto-sp13_S_contig599:11050..15226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size957
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionTim17/22-like protein
Ec32 orthologEc-07_003650.1
Cds size957
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig599.16566.1prot_Ecto-sp13_S_contig599.16566.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig599 11050..15226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.745206-CDS-Ecto-sp13_S_contig599:11049..111401681463831.745206-CDS-Ecto-sp13_S_contig599:11049..11140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 11050..11140 +
1681463831.7590282-CDS-Ecto-sp13_S_contig599:11525..116051681463831.7590282-CDS-Ecto-sp13_S_contig599:11525..11605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 11526..11605 +
1681463831.767978-CDS-Ecto-sp13_S_contig599:11848..121121681463831.767978-CDS-Ecto-sp13_S_contig599:11848..12112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 11849..12112 +
1681463831.779447-CDS-Ecto-sp13_S_contig599:12867..130131681463831.779447-CDS-Ecto-sp13_S_contig599:12867..13013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 12868..13013 +
1681463831.7903156-CDS-Ecto-sp13_S_contig599:13798..138931681463831.7903156-CDS-Ecto-sp13_S_contig599:13798..13893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 13799..13893 +
1681463831.8006237-CDS-Ecto-sp13_S_contig599:14582..147161681463831.8006237-CDS-Ecto-sp13_S_contig599:14582..14716Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 14583..14716 +
1681463831.8112519-CDS-Ecto-sp13_S_contig599:15079..152261681463831.8112519-CDS-Ecto-sp13_S_contig599:15079..15226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig599 15080..15226 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig599.16566.1

>prot_Ecto-sp13_S_contig599.16566.1 ID=prot_Ecto-sp13_S_contig599.16566.1|Name=mRNA_Ecto-sp13_S_contig599.16566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=319bp
MVWFGLGRRKPADEGSPSSPTLSTDGINMSTGGGTQAASESTARSSTPMA
EPVGGPKTTLNAPAAAMRADACDNASPVEEQQEQQQGEEVADSSPRYALR
LKAAFLDTVATAKRAPETLEEAMAVIKGERAVKPDYGRAVGTVSAAFAGG
CAHGWWHGAALAAKYPPHQRSIVRVRAGARRGLRFATFALIFEGSSAVME
ALRQKKDFVGGTVGGALAGMAYGVSGGVAAARSGLFYGVWLGGVFGLFRN
HVASLREQARLAEEDERLAQEERDAIGATALRRSIAGIDAQLRTWPTAAA
DSEDETDTPELASSRRTP*
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mRNA from alignment at Ecto-sp13_S_contig599:11050..15226+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig599.16566.1 ID=mRNA_Ecto-sp13_S_contig599.16566.1|Name=mRNA_Ecto-sp13_S_contig599.16566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:11050..15226+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTGGTTCGGCCTTGGGCGACGTAAACCGGCTGATGAGGGCTCGCC
GTCTTCCCCTACCCTATCGACCGATGGAATCAACATGTCAAGTGAGTCCC
GTTTGAATTTCCCCTTGATCGTCCTCTCTGTGTGGCCGCCGGTACATGAT
GGTATGATGGCATGAGTCGTTCCGGCCCTTCTGTACTGACAGCATATTTA
CGTCAGTATGTATGCAACGCCTTTTGCATATGTGCAGGACACATTCTCTC
TCCCTCTCCAAAGCACGACGGACGCTTCACGAATGGTCGTTTTTCTTCTC
CTGCGGAACATAAATTATGAATCTGAAAGGTTTCAGGTTGGGTTCAACAG
TGTGATACCCTGACCGCGGGGATCTTCTGTACTCTTTTCTTCCGGTACGT
TTTGTTTCCATCTGTGACGCGATGTTTCCCATGCCTGCACATCTGCGCCT
TTTGCGCCGTTTGAACTGCTACACAGCAGGCGGTGGTACTCAAGCCGCAT
CGGAGTCGACAGCACGTTCTAGCACGCCCATGGCGGAGCCGGTTGGAGGA
CCGAAGGTTGGTCCGAGGGAGGTGTACATGGTCTAGAACATGCATGAGTC
GTTCATGGGAGTATGTAACCGAGAAAGAAGTCGGGGGCTCACGTGACTGC
TGCCGCGAATAAATCAAGCCCCACGACGCACGACCTTGCCCCCGAGGTAT
CTAGTTACCCTGCTTGGCGTATAACCGGCGCTGCTCAGCCGACCTGAGTT
GTGACTTCGAGCACATGCTCGCCTCCTCCGAATGCCCGACTTTCATCAGA
CCACGTTGAATGCTCCAGCGGCAGCGATGAGGGCTGATGCCTGCGATAAC
GCTTCACCAGTCGAAGAGCAGCAGGAGCAACAGCAAGGGGAGGAGGTTGC
GGATTCGAGTCCAAGGTACGCACTTAGGCTCAAGGCCGCCTTCCTAGACA
CCGTGGCGACGGCCAAGAGAGCGCCCGAGACGCTGGAGGAGGCCATGGCC
GTCATCAAGGGAGAGAGAGCCGTAAAGCCGGACTACGGGAGAGCGGTCGG
CACCGTGTCGGCGGTGCGTTCGAGCTGAGGCGAAGCCACTGCTGTAGTAT
TTGAAGCCACACACTGCTGTCCGGCCGTTGCTGCATGCATCGTCCATCAT
CCGACCTGATATTTTTTTTTCCAGTAACTTGGCAGCGGGGAGTTTTGGCG
GAGCAAGGAGACAATCGAGACTGCCATGCGCTCCATGTCCCAGTCGTTCC
TAAAACTATTGCTCCGTTTGCCGAACAAGTGCATGCACCCAGCCAGGGTA
CTACTGTAGACGGGGCTGCCATGGCCGTGTCTTTCGTTATGGGCTCGACC
TCCGTTCAACCTCCTCGGACTCTCGCAAGCATACATACAGCAGCAGTATG
TCGGGGGTGCCTTGTGCTACGTTTCCGATGTCTCAGATTCCCTGACGAAG
AAGCCCCTTGAATCTTGAATGTGCTCCAGCTTCCGCACGCTTGTCATCGG
GGAGAGCATGAACCCCCCACCCAGAGCATAGCGTGCACAGCCTCGTTTTC
CGGACTACTTATGGAATTCATGTGTGCACCCACTCTTTGCGCAACCTTTG
TACGCATGCATCTGTCAACTCAGAAACCTAAATCTCCGCTTACAGCCGCT
AACTCTATTCCGGCTGGTGTCGCCAGCAGCGTGCTTGCCTCAGCCCGGGC
TTTTCGGCACGTCCGGCATTTTAGAACGCGTCGTCAGTGTCGTAGTATAC
CTCTCACCACGTTCGGATTCGCACGACCCGTTTCGATTACACATTTTAAT
TTCTTGCGTTGCTTGCAGGCTTTCGCCGGAGGCTGCGCCCACGGCTGGTG
GCACGGCGCGGCGCTTGCCGCCAAGTACCCTCCGCACCAACGTAGTATCG
TCAGAGTGCGCGCGGGAGCTCGGAGGGGGCTTAGGTTCGCGACCTTCGCC
CTGATATTTGAGGGGTGAGTGCCCTCCCCGCGACGATGATATGTGACCGA
AACGCTGATGAAAGCCTCCAACTGTTCTGTGTACTTCTCACACCGAGAAA
CCTCCACGAAGATGGGCGCATACACAAGTCCCGCTCACGATATGTCTGGA
CTCTGGGTGCATGCAACACTTCGCCTCGCCTCAGCAGCGGCCGGTTGAAG
GCACCGCTCCCTGAAGTTTCACGCTCAGGGTTTTCTCGTTCACGACCATG
GTGGTTCAACGGGTGCCGTCCTCGGCCACGGCGACCCTTGGCGGTAGACC
TTTGGAGACACACCGCGAAAGGGCACGGGTTGCACGTACACGGAAAATTG
GTGTTCCGTAAAGACACGAGTAAACCCACGACCCGCAGGCTGACCTTTGA
AAAGCTCGATTGCTCCACAGCCAAGGTGGAACGACAAGCGACCGATATGT
ACGTTGAAGGCAAGCTATCTCGACGAGATTATTTCCAGCTCAGCCGTTTC
TTGGGATTGATAGCCTCTTGGTTTTGGAGCAATCGAGCTTTAGAATTTTG
TCTCCGGGGGGAGTGCGATCGCTCGCGCTTTCCCGGTATGTATCCAGGTC
CATAGTCTCCATTTATTCCTTGTCTTAATCGTAAACAGCAGCTATCGCTA
CATGACCAAATGAATCAACACACCAATCACCCTCGTTCATTCAGCAGCAG
CAGCAGAAGTGGTGGAGGTGAAACTCATAAATGTCCGCGATTTCCATTCG
TTTGCGCTACTACACCATGCCCGCCCCCGTGGTTTTGGACGAATTTTAGC
TCGTCTGCTGTTATGGAGGCCCTGCGACAGAAGAAGGACTTCGTCGGGGG
CACGGTGGGAGGCGCGCTGGCGGGCATGGCCTACGGTGTTTCAGGTGTGT
GCTCGTGTGTGACTTATTTGCTTCGTTCCTTTTTTCTGTTGCACAGAATG
TAGCTCCTCCCACGGATGGACCTCACTCTATGATATATACCCGATACGCG
GTATTCCGTCTGTGACAAAAATATGTGGAAACCCTCTGGACCGATTGTCA
GAGCCCGACTACTTCCCGACGAACAGGATGAATAACTGCTTACAATGCGT
TTGCCGCTCTCGATGAGGAGGCTTTGACGCTGCCATTGTTCGGCACCGCC
ACTCTTTCTGCAGTGGAGACATCGAGCTTTGAAAGTCGATCTAAGGAGGT
GTATTATGTCATGTCACTTTACCACGGTGTAACACGTACACCAGCACGCA
CTGGCGACATTGACCAATAAAAGCGATTCTCGATTGCATTGGTAGTCTCT
TAACTTTCGGCCATCTTGTCCTCTTTGACGGATATCTGTCGAGCCCTGCC
GATGGGTGCGTTCCGATGTTGGTAATCGTTAAGTACCGCTCGTTTCCTAG
ACACCGTTCGGCCCCGGCTGCCGCGTCAAACACATACCGATAGGAGTAGA
CTAGAACCAGAATATATTCTCCGTATTTGGGACGAAAACAGTAGTAGTAG
TGGGCCGAATCTTGAGCGCGTTTCTCCCGTTTGTTTCTATGTTCATGCAC
ATGGTGCCGGTTTCCTTGCTTGTTGTCCTGCAGGCGGTGTGGCCGCCGCG
CGAAGCGGTCTGTTCTACGGCGTCTGGCTCGGAGGCGTGTTCGGTCTATT
CAGGAATCACGTGGCGTCCTTGAGGGAGCAGGCCCGGCTGGCGGAGGAAG
ACGAGCGATTGGCACAGGTGGAGAGACGAAGAAAAACCGCCTCTGTTTTT
CCTTTCTTTCGTCGCTTCGCCGGGGTGTGTTTGCGGTGGGGACTTTCATC
ATTCGACAGCTGTTGCTGTTGTTGTTGTTGTTGACTTTGCTGAAAAATTC
GGCGAGATTGTGTGGCTAGGGTTGAGACCAAACGGCACGGGCAACGAGCC
ATGTGTGCTGTGGATCGATTGGCCTGAAATTGCTCACCTCATCGCATCAT
TTTGCAATATCCGTTAGGCTGAAGCACTGCCTGCCGTAGGCTCGCTCCGG
TATCCACCCCTTTCACGATTATTTCGCACCAACACTCTTGACTGCATGAT
GGTCCGTTGTTTGCCCAACCCCGTCCTCAGGAGGAAAGGGATGCGATCGG
GGCGACGGCGCTGAGAAGGTCCATAGCAGGGATAGATGCCCAGCTCAGGA
CATGGCCCACTGCAGCCGCTGACAGCGAAGACGAAACGGACACGCCGGAA
CTCGCTTCGTCACGAAGAACACCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig599:11050..15226+

>mRNA_Ecto-sp13_S_contig599.16566.1 ID=mRNA_Ecto-sp13_S_contig599.16566.1|Name=mRNA_Ecto-sp13_S_contig599.16566.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=957bp|location=Sequence derived from alignment at Ecto-sp13_S_contig599:11050..15226+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTTGGTTCGGCCTTGGGCGACGTAAACCGGCTGATGAGGGCTCGCC
GTCTTCCCCTACCCTATCGACCGATGGAATCAACATGTCAACAGGCGGTG
GTACTCAAGCCGCATCGGAGTCGACAGCACGTTCTAGCACGCCCATGGCG
GAGCCGGTTGGAGGACCGAAGACCACGTTGAATGCTCCAGCGGCAGCGAT
GAGGGCTGATGCCTGCGATAACGCTTCACCAGTCGAAGAGCAGCAGGAGC
AACAGCAAGGGGAGGAGGTTGCGGATTCGAGTCCAAGGTACGCACTTAGG
CTCAAGGCCGCCTTCCTAGACACCGTGGCGACGGCCAAGAGAGCGCCCGA
GACGCTGGAGGAGGCCATGGCCGTCATCAAGGGAGAGAGAGCCGTAAAGC
CGGACTACGGGAGAGCGGTCGGCACCGTGTCGGCGGCTTTCGCCGGAGGC
TGCGCCCACGGCTGGTGGCACGGCGCGGCGCTTGCCGCCAAGTACCCTCC
GCACCAACGTAGTATCGTCAGAGTGCGCGCGGGAGCTCGGAGGGGGCTTA
GGTTCGCGACCTTCGCCCTGATATTTGAGGGCTCGTCTGCTGTTATGGAG
GCCCTGCGACAGAAGAAGGACTTCGTCGGGGGCACGGTGGGAGGCGCGCT
GGCGGGCATGGCCTACGGTGTTTCAGGCGGTGTGGCCGCCGCGCGAAGCG
GTCTGTTCTACGGCGTCTGGCTCGGAGGCGTGTTCGGTCTATTCAGGAAT
CACGTGGCGTCCTTGAGGGAGCAGGCCCGGCTGGCGGAGGAAGACGAGCG
ATTGGCACAGGAGGAAAGGGATGCGATCGGGGCGACGGCGCTGAGAAGGT
CCATAGCAGGGATAGATGCCCAGCTCAGGACATGGCCCACTGCAGCCGCT
GACAGCGAAGACGAAACGGACACGCCGGAACTCGCTTCGTCACGAAGAAC
ACCGTAA
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