prot_Ecto-sp13_S_contig599.16565.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig599.16565.1
Unique Nameprot_Ecto-sp13_S_contig599.16565.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length214
Homology
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: D7G1Y9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1Y9_ECTSI)

HSP 1 Score: 413 bits (1061), Expect = 1.080e-145
Identity = 212/213 (99.53%), Postives = 212/213 (99.53%), Query Frame = 0
Query:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ KGQVCKITRPSETAGRYVTYRLCI
Sbjct:    1 MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQ-KGQVCKITRPSETAGRYVTYRLCI 212          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A835YLJ3_9STRA (RNA polymerase Rpb5, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLJ3_9STRA)

HSP 1 Score: 283 bits (724), Expect = 2.420e-94
Identity = 139/211 (65.88%), Postives = 178/211 (84.36%), Query Frame = 0
Query:    7 RLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVS----MTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            +LS EG K++RIR+TC+KML KRGYNV  EH+S      ++ F++Q+G  P+R  +T+LVEKVDDP D+IFVFFPD+EKVGVK IR+Y ++M +E V+++IIV++GG+TP +R A  +LC QR VQ+EDFKDAELM+DIT+H LVPEHQVL++E+KAELLKRYKL DTQLPRI STDPVAR++G+Q +GQV KI RPSETAGRYVTYRLC+
Sbjct:    4 QLSLEGSKLFRIRKTCLKMLSKRGYNVADEHISGSNASATQRFIEQFGDNPSREQMTILVEKVDDPSDRIFVFFPDEEKVGVKTIRTYGDRMKDENVRKSIIVVRGGMTPLSRDANAQLCQQRGVQIEDFKDAELMVDITDHVLVPEHQVLNNEEKAELLKRYKLTDTQLPRIHSTDPVARYYGLQ-RGQVVKIIRPSETAGRYVTYRLCM 213          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A482UUV9_9ARCH (DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UUV9_9ARCH)

HSP 1 Score: 236 bits (601), Expect = 1.130e-75
Identity = 120/206 (58.25%), Postives = 161/206 (78.16%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  K++R+R+TC+KML KRGY V +  + M+++ F  ++G  P+R  LT+L EK DDP DQIFVFFP+DEKVGV PI+ Y ++M    V RAIIV+K  +TPFAR+A++E+ + R  +VE F+DAEL++DITEH LVPEH VL+ +QK ELL+RY+LK +QLPRIQ  DP+AR+ G++Q GQV KI RPSETAGRYVTYR+C+
Sbjct:    8 LNPEASKMFRVRKTCLKMLSKRGYVVDENALQMSTDQFRDKFGETPSRDSLTILAEKSDDPTDQIFVFFPEDEKVGVNPIKIYCQRMKTANVYRAIIVVKINLTPFARTAVKEM-SLRGYRVEYFRDAELLVDITEHKLVPEHIVLTDQQKLELLERYRLKVSQLPRIQIADPIARYMGLRQ-GQVVKIVRPSETAGRYVTYRICV 211          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A6S9BLJ2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9BLJ2_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.030e-75
Identity = 121/206 (58.74%), Postives = 160/206 (77.67%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  ++YR+ +T   MLEKRGY V +E  +M+++AF Q++G +P R  LT+LVEK DD  +Q+FVFFP DEKVGVKPI+  ++KM EE V  AI+V++  IT FA+ A+QE+      ++E FK+AEL++DITEH LVPEHQVLS  +K ELLKRY+LK+TQLPRIQ  DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   27 LTPEASRLYRVYKTVAAMLEKRGYMVPREIRTMSADAFTQKFGEKPTRQSLTILVEKADDESNQLFVFFPIDEKVGVKPIKELTDKMKEETVSNAILVLREDITAFAKQAVQEM--SDSFRIEHFKEAELLVDITEHNLVPEHQVLSKNEKEELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 229          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: W4GMP1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces TaxID=100860 RepID=W4GMP1_9STRA)

HSP 1 Score: 234 bits (598), Expect = 2.640e-75
Identity = 115/203 (56.65%), Postives = 158/203 (77.83%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  K++R+R+T +KML  RGY V +E +  T E F+ Q+G  P R  +T+LVEKVDDP D +FVF+P+D KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VL+ E+K  LLKRYKLKDTQLPR+Q++DP+AR++GM  +GQV KI RPSETAGRYVTYR
Sbjct:    3 LNPEASKLFRVRKTVVKMLHNRGYIVSEEELHRTPEGFIGQFGENPTRDTMTILVEKVDDPSDNLFVFYPEDAKVGVKPIRNYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKENELLVDITEHTLVPVHKVLTKEEKLALLKRYKLKDTQLPRMQASDPIARYYGMS-RGQVVKIIRPSETAGRYVTYR 202          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: K3WP89_GLOUD (Uncharacterized protein n=27 Tax=Oomycota TaxID=4762 RepID=K3WP89_GLOUD)

HSP 1 Score: 232 bits (592), Expect = 2.220e-74
Identity = 114/203 (56.16%), Postives = 158/203 (77.83%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YR+R+T +KML  RGY V +  + MT E+F  Q+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR++  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VL+ ++KA LLKRY++KD+QLPR+Q TDP+AR++G+  +GQV KI RPSETAGRYVTYR
Sbjct:    4 LTPEASRLYRVRKTTVKMLHNRGYIVSENELVMTPESFQHQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRTFCNRMKDENVSKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLNRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYR 203          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S2KP14_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KP14_9STRA)

HSP 1 Score: 233 bits (593), Expect = 3.330e-74
Identity = 120/210 (57.14%), Postives = 161/210 (76.67%), Query Frame = 0
Query:    4 SGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            SG  L+ E  +++R+ +T   ML KRGY V ++   M+   F++++   P R  LT+LVEK DD  +Q+FVFFP+DEKVGVKPI++ +++M +E V RAI+V++  ITP AR A+QEL      ++E FK++EL++DITEHTLVPEHQVLS+ +K ELLKRY+LKDTQLPRIQ  DPVARF+GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   23 SGVSLNPEASRLFRVYKTVSAMLHKRGYLVPRDIRDMSPATFVEKFTEMPTRESLTMLVEKDDDESNQLFVFFPEDEKVGVKPIKTLTDRMKDESVSRAILVLRVDITPIARQALQEL--SESFRIEHFKESELLVDITEHTLVPEHQVLSTNEKQELLKRYRLKDTQLPRIQPNDPVARFYGMK-RGQVVKIIRPSETAGRYVTYRVCL 229          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A067CT03_SAPPC (Uncharacterized protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CT03_SAPPC)

HSP 1 Score: 230 bits (587), Expect = 1.360e-73
Identity = 113/203 (55.67%), Postives = 156/203 (76.85%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYR 210
            L+ E  ++YR+R+T +KML  RGY V  + +  T++ F  Q+G  P R  +T+LVEKVDDP D +FVF+PDD KVGVKPIR+Y  +M +E V +AI++++ GITPFA+ A+ E+  +   +++ FK+ EL++DITEHTLVP H+VL+ E+K  LLKRYKLKD+QLPR+Q +DP+AR++GM  +GQV KI RPSETAGRYVTYR
Sbjct:    6 LNPEASRLYRVRKTVVKMLANRGYIVSDDELKRTTDGFAAQFGENPTREMMTILVEKVDDPSDNLFVFYPDDAKVGVKPIRTYCNRMKDENVTKAILIVQDGITPFAKQALNEMAPR--YKIDHFKETELLVDITEHTLVPVHKVLTREEKIALLKRYKLKDSQLPRMQVSDPIARYYGMT-RGQVVKIIRPSETAGRYVTYR 205          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A5D6XUM4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUM4_9STRA)

HSP 1 Score: 236 bits (601), Expect = 3.760e-73
Identity = 117/206 (56.80%), Postives = 160/206 (77.67%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ E  +++R+R+T +KML  RGY V +  + MT E+F QQ+G  P R  +T+LVEK+DDP D +FVFFP+D KVGVKPIR+Y  +M +E V +AI+V++ GITPFAR A+ E+  +   ++E FK+ EL++DITEHTLVP H+VLS ++KA LLKRY++KD+QLPR+Q TDP+AR++G+  +GQV KI RPSETAGRYVTYR  I
Sbjct:    4 LTPEASRLFRVRKTTVKMLHNRGYIVSENELVMTPESFQQQFGDNPTREMMTILVEKIDDPSDNLFVFFPEDTKVGVKPIRNYCNRMKDENVTKAILVVQEGITPFARQALNEMAPR--YKIEHFKETELLVDITEHTLVPVHRVLSRDEKAALLKRYRIKDSQLPRMQVTDPIARYYGIT-RGQVVKIIRPSETAGRYVTYRAVI 206          
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Match: A0A7S3V5Q1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V5Q1_9STRA)

HSP 1 Score: 231 bits (588), Expect = 4.000e-73
Identity = 117/206 (56.80%), Postives = 159/206 (77.18%), Query Frame = 0
Query:    8 LSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYGPEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVKRAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEHQVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPSETAGRYVTYRLCI 213
            L+ +  +++R+ +T   ML KRGY V ++   MT   F Q++G  P+R  LT+LVEK DD  DQ+FVFFP+DEKVGVKPI+ Y+++M +E V  +I+V++  IT +A+ A+QE+      ++E FK+AEL++DITEHTLVPEHQVLS  +KAELLKRY+LK+TQLPRIQ  DPVAR++GM+ +GQV KI RPSETAGRYVTYR+C+
Sbjct:   50 LTPDASRLFRVYKTVSAMLNKRGYMVPRDMREMTPALFTQKFGEHPSREALTILVEKADDETDQLFVFFPEDEKVGVKPIKVYTDRMKDEAVTNSILVLRVDITGYAKQAVQEM--SDSCRIEHFKEAELLVDITEHTLVPEHQVLSPNEKAELLKRYRLKETQLPRIQPNDPVARYYGMK-RGQVVKIIRPSETAGRYVTYRICM 252          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig599.16565.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1Y9_ECTSI1.080e-14599.53Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YLJ3_9STRA2.420e-9465.88RNA polymerase Rpb5, C-terminal domain-containing ... [more]
A0A482UUV9_9ARCH1.130e-7558.25DNA-directed RNA polymerase subunit Rpo5 n=1 Tax=a... [more]
A0A6S9BLJ2_9STRA2.030e-7558.74Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
W4GMP1_9STRA2.640e-7556.65Uncharacterized protein n=3 Tax=Aphanomyces TaxID=... [more]
K3WP89_GLOUD2.220e-7456.16Uncharacterized protein n=27 Tax=Oomycota TaxID=47... [more]
A0A7S2KP14_9STRA3.330e-7457.14Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A067CT03_SAPPC1.360e-7355.67Uncharacterized protein n=4 Tax=Saprolegniaceae Ta... [more]
A0A5D6XUM4_9STRA3.760e-7356.80Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S3V5Q1_9STRA4.000e-7356.80Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilyGENE3D3.40.1340.10coord: 8..139
e-value: 6.7E-38
score: 131.8
IPR036710RNA polymerase Rpb5, N-terminal domain superfamilySUPERFAMILY53036Eukaryotic RPB5 N-terminal domaincoord: 10..139
IPR005571RNA polymerase, Rpb5, N-terminalPFAMPF03871RNA_pol_Rpb5_Ncoord: 10..94
e-value: 1.2E-27
score: 96.3
IPR000783RNA polymerase, subunit H/Rpb5 C-terminalPFAMPF01191RNA_pol_Rpb5_Ccoord: 140..212
e-value: 5.5E-31
score: 106.3
IPR014381DNA-directed RNA polymerase RPB5 subunit, eukaryote/virusPIRSFPIRSF000747RPB5coord: 7..213
e-value: 1.4E-73
score: 244.8
IPR035913RPB5-like RNA polymerase subunit superfamilyGENE3D3.90.940.20coord: 140..213
e-value: 1.1E-32
score: 113.5
IPR035913RPB5-like RNA polymerase subunit superfamilySUPERFAMILY55287RPB5-like RNA polymerase subunitcoord: 137..213
IPR039531DNA-directed RNA polymerase subunit Rpb5-likePANTHERPTHR10535DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1coord: 10..211
NoneNo IPR availablePANTHERPTHR10535:SF8coord: 10..211
NoneNo IPR availablePRODOMPD005155coord: 146..211
e-value: 2.0E-22
score: 260.0
IPR020609Archaeal RpoH /eukaryotic RPB5 RNA polymerase subunitHAMAPMF_00025RNApol_RpoH_RPB5coord: 139..213
score: 19.136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig599contigEcto-sp13_S_contig599:7231..10493 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig599.16565.1mRNA_Ecto-sp13_S_contig599.16565.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig599 7231..10493 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig599.16565.1 ID=prot_Ecto-sp13_S_contig599.16565.1|Name=mRNA_Ecto-sp13_S_contig599.16565.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=214bp
MEGSGPRLSDEGHKIYRIRQTCMKMLEKRGYNVLQEHVSMTSEAFLQQYG
PEPNRHDLTLLVEKVDDPMDQIFVFFPDDEKVGVKPIRSYSEKMLEEEVK
RAIIVIKGGITPFARSAIQELCAQREVQVEDFKDAELMLDITEHTLVPEH
QVLSSEQKAELLKRYKLKDTQLPRIQSTDPVARFFGMQQKGQVCKITRPS
ETAGRYVTYRLCI*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036710RNA_pol_Rpb5_N_sf
IPR005571RNA_pol_Rpb5_N
IPR000783RNA_pol_subH/Rpb5_C
IPR014381DNA_RNA_pol_RPB5_euk/virus
IPR035913RPB5-like_sf
IPR039531Rpb5-like
IPR020609RpoH/RPB5