mRNA_Ecto-sp13_S_contig5988.16563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5988.16563.1
Unique NamemRNA_Ecto-sp13_S_contig5988.16563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5988.16563.1 vs. uniprot
Match: D7FND6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND6_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 2.310e-9
Identity = 26/41 (63.41%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:    1 RVRYAPPMPKIGAAKVGQHLKNRHGGVGALLGTKMTPGRLA 123
            R  Y  PMP +GAA + QHL+NRH GVGALLG++M PG LA
Sbjct:    2 RYLYGSPMPNVGAANLEQHLRNRHRGVGALLGSEMAPGMLA 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5988.16563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FND6_ECTSI2.310e-963.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5988contigEcto-sp13_S_contig5988:7227..7352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size126
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.5668209-CDS-Ecto-sp13_S_contig5988:7226..73311681463831.5668209-CDS-Ecto-sp13_S_contig5988:7226..7331Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5988 7227..7331 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.5773988-UTR-Ecto-sp13_S_contig5988:7331..73521681463831.5773988-UTR-Ecto-sp13_S_contig5988:7331..7352Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig5988 7332..7352 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5988.16563.1prot_Ecto-sp13_S_contig5988.16563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5988 7227..7331 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5988.16563.1

>prot_Ecto-sp13_S_contig5988.16563.1 ID=prot_Ecto-sp13_S_contig5988.16563.1|Name=mRNA_Ecto-sp13_S_contig5988.16563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
MPKIGAAKVGQHLKNRHGGVGALLGTKMTPGRLA*
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mRNA from alignment at Ecto-sp13_S_contig5988:7227..7352-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5988.16563.1 ID=mRNA_Ecto-sp13_S_contig5988.16563.1|Name=mRNA_Ecto-sp13_S_contig5988.16563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=126bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5988:7227..7352- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGTGCGCTACGCCCCCCCTATGCCAAAGATCGGCGCCGCAAAGGTAGG
GCAGCACTTGAAGAACAGGCACGGAGGTGTCGGAGCCCTCCTCGGCACTA
AGATGACGCCGGGCAGGCTGGCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5988:7227..7352-

>mRNA_Ecto-sp13_S_contig5988.16563.1 ID=mRNA_Ecto-sp13_S_contig5988.16563.1|Name=mRNA_Ecto-sp13_S_contig5988.16563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5988:7227..7352- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCAAAGATCGGCGCCGCAAAGGTAGGGCAGCACTTGAAGAACAGGCA
CGGAGGTGTCGGAGCCCTCCTCGGCACTAAGATGACGCCGGGCAGGCTGG
CGTGA
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