mRNA_Ecto-sp13_S_contig59831.16559.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59831.16559.1
Unique NamemRNA_Ecto-sp13_S_contig59831.16559.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59831.16559.1 vs. uniprot
Match: A0A6H5KPV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPV6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 4.060e-9
Identity = 37/90 (41.11%), Postives = 48/90 (53.33%), Query Frame = -2 
Query:   31 RKFSRPFLCFFCNSPIGHEQPYYYRLDDPRSRFREDNKTVMSVYLHADGARCVGKKQPDGSDLGCA-ECSESTED--VHDDMGAGQDAHM 291
            +KF++PF CFFC   IG+  PY  R+  P       N     VYLH DGA CVGK  P  +   CA  C +S+ D  ++D MG G D + 
Sbjct:   80 KKFAKPFKCFFCRGVIGYSTPYL-RMPHPLGGVNAWNNQPRFVYLHTDGASCVGKTVPTDTKAPCAGHCGKSSPDHSLYDMMGIGNDTYF 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59831.16559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KPV6_9PHAE4.060e-941.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59831contigEcto-sp13_S_contig59831:4..838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size837
Hectar predicted targeting categoryother localisation
Exons1
Cds size447
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.3170342-CDS-Ecto-sp13_S_contig59831:3..4501681463831.3170342-CDS-Ecto-sp13_S_contig59831:3..450Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59831 4..450 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463831.3261755-UTR-Ecto-sp13_S_contig59831:450..8381681463831.3261755-UTR-Ecto-sp13_S_contig59831:450..838Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig59831 451..838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59831.16559.1prot_Ecto-sp13_S_contig59831.16559.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59831 4..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59831.16559.1

>prot_Ecto-sp13_S_contig59831.16559.1 ID=prot_Ecto-sp13_S_contig59831.16559.1|Name=mRNA_Ecto-sp13_S_contig59831.16559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
PACRTCSQCRHVGILARAHVVVDVLRRFATLGAAKVGPVGLLLADAPGAV
GVEIDGHDRFVVLTESAPRVVETVIVGLLVPDGRIAEKAKEGPGELPLLT
SACFTTETDTFLSHCMQLSTSKASIDKGNAIDRKGSARSREFRSENEN*
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mRNA from alignment at Ecto-sp13_S_contig59831:4..838+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59831.16559.1 ID=mRNA_Ecto-sp13_S_contig59831.16559.1|Name=mRNA_Ecto-sp13_S_contig59831.16559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=835bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59831:4..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCTTGTCGAACTTGCAGTCAGTGCAGACATGTGGGCATCTTGGCCCG
CGCCCATGTCGTCGTGGACGTCCTCCGTCGATTCGCTACACTCGGCGCAG
CCAAGGTCGGACCCGTCGGGCTGCTTCTTGCCGACGCACCTGGCGCCGTC
GGCGTGGAGATAGACGGACATGACCGTTTTGTTGTCCTCACGGAATCGGC
TCCGAGGGTCGTCGAGACGGTAATAGTAGGGCTGCTCGTGCCCGATGGGC
GAATTGCAGAAAAAGCAAAGGAAGGGCCGGGAGAACTTCCTCTACTGACG
TCGGCTTGTTTTACCACCGAAACGGACACCTTCCTTTCGCACTGCATGCA
GCTGTCCACGTCGAAAGCATCCATAGACAAGGGGAACGCCATCGATAGGA
AGGGAAGTGCGCGGTCGCGTGAGTTTCGCAGCGAGAACGAAAACTGAGAA
AAAGCGTGCGGGCGGGACCGGTCGAGCGATGACTCCACAAAGAAGACGCT
CGCGTGGTGATCATGCATCTCTCTCTGCTGGCGGAGAAGCCTGCCGGTGG
AGAAGGCAAACAAACATGATCTACAGTACCCTGCGACCACTCAAATGAGT
GCTTCGCAGCGCTCCTCACTATGAGAAGTGGTCATCAGCGAGCGAGGTGA
TATGTTACGAGCGAGAGTGTATCTACACGTAACCATCTGTCCATTGCCTG
CCCATGAGGTATACAGGCTATGTAGAGTGCAAGCGTCTGTCTTTTGGCGA
CGCATGAGGTGTACATGAGGCTGTCTACCAACGGAAATACCAACACTGTA
CAAAATGGTCACCTGATGCCTCACCCCTCGCAGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59831:4..838+

>mRNA_Ecto-sp13_S_contig59831.16559.1 ID=mRNA_Ecto-sp13_S_contig59831.16559.1|Name=mRNA_Ecto-sp13_S_contig59831.16559.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59831:4..838+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTGCTTGTCGAACTTGCAGTCAGTGCAGACATGTGGGCATCTTGGCCCG
CGCCCATGTCGTCGTGGACGTCCTCCGTCGATTCGCTACACTCGGCGCAG
CCAAGGTCGGACCCGTCGGGCTGCTTCTTGCCGACGCACCTGGCGCCGTC
GGCGTGGAGATAGACGGACATGACCGTTTTGTTGTCCTCACGGAATCGGC
TCCGAGGGTCGTCGAGACGGTAATAGTAGGGCTGCTCGTGCCCGATGGGC
GAATTGCAGAAAAAGCAAAGGAAGGGCCGGGAGAACTTCCTCTACTGACG
TCGGCTTGTTTTACCACCGAAACGGACACCTTCCTTTCGCACTGCATGCA
GCTGTCCACGTCGAAAGCATCCATAGACAAGGGGAACGCCATCGATAGGA
AGGGAAGTGCGCGGTCGCGTGAGTTTCGCAGCGAGAACGAAAACTGA
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