mRNA_Ecto-sp13_S_contig59778.16550.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59778.16550.1
Unique NamemRNA_Ecto-sp13_S_contig59778.16550.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: A0A6H5KNE5_9PHAE (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNE5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 5.780e-18
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYA IER
Sbjct:  129 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: D7FXI8_ECTSI (Protein farnesyltransferase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 4.620e-17
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYA IER
Sbjct:  144 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYAGIER 181
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: K8YQG9_NANGC (Protein farnesyltransferase subunit beta (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQG9_NANGC)

HSP 1 Score: 62.8 bits (151), Expect = 4.860e-11
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    4 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            GGFGGGP Q+ HCAP YA+VL+LLILGT EAY +I+R
Sbjct:  119 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDR 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: A0A836CMB6_9STRA (Protein farnesyltransferase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.490e-10
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    4 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            GGFGGGPQQL HCAP YA+VL+LL+LGT  AY++++R
Sbjct:  128 GGFGGGPQQLAHCAPTYAAVLTLLLLGTEAAYSAVDR 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: W7TZN2_9STRA (Protein farnesyltransferase subunit beta n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 2.040e-10
Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    4 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            GGFGGGP Q+ HCAP YA+VL+LLILGT EAY +I+R
Sbjct:  135 GGFGGGPYQISHCAPTYAAVLALLILGTEEAYKTIDR 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: UPI001C9CAA5F (protein farnesyltransferase subunit beta n=1 Tax=Venturia canescens TaxID=32260 RepID=UPI001C9CAA5F)

HSP 1 Score: 58.5 bits (140), Expect = 6.340e-9
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            GG+GGGP Q PH AP YA+V +L I+GTPEAY SI+R
Sbjct:  123 GGYGGGPGQYPHLAPTYAAVSALCIIGTPEAYRSIDR 159
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: A0A7R8XAP2_9CRUS (Protein farnesyltransferase subunit beta n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8XAP2_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 8.630e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            +GGFGGGPQQLPH A  YA+VL+L +LGT EAY  I+R
Sbjct:  927 DGGFGGGPQQLPHLAATYAAVLALSVLGTEEAYNVIDR 964
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: A0A6A7G7K6_9CRUS (Protein farnesyltransferase subunit beta (Fragment) n=2 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G7K6_9CRUS)

HSP 1 Score: 58.2 bits (139), Expect = 8.690e-9
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            +GGFGGGPQQLPH AP YA+V +L+ +GT EAY  I R
Sbjct:  121 SGGFGGGPQQLPHLAPSYAAVAALITIGTQEAYEVINR 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: F0Y5G6_AURAN (Protein farnesyltransferase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5G6_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.170e-8
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    4 GGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            GG+GGGPQQL HCAP YA+ L++ +LGT  AY S++R
Sbjct:   74 GGYGGGPQQLAHCAPTYAASLAIAVLGTRRAYESVDR 110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Match: A0A059LJK1_9CHLO (Protein farnesyltransferase subunit beta (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LJK1_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 2.240e-8
Identity = 23/38 (60.53%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER 114
            +GGFGGGP QLPH AP YA+V +L+ LG PEA  +++R
Sbjct:  107 SGGFGGGPHQLPHLAPTYAAVATLVSLGCPEALEAVDR 144
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59778.16550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNE5_9PHAE5.780e-1897.37Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
D7FXI8_ECTSI4.620e-1797.37Protein farnesyltransferase subunit beta n=1 Tax=E... [more]
K8YQG9_NANGC4.860e-1172.97Protein farnesyltransferase subunit beta (Fragment... [more]
A0A836CMB6_9STRA1.490e-1070.27Protein farnesyltransferase subunit beta n=1 Tax=T... [more]
W7TZN2_9STRA2.040e-1072.97Protein farnesyltransferase subunit beta n=2 Tax=N... [more]
UPI001C9CAA5F6.340e-967.57protein farnesyltransferase subunit beta n=1 Tax=V... [more]
A0A7R8XAP2_9CRUS8.630e-968.42Protein farnesyltransferase subunit beta n=1 Tax=D... [more]
A0A6A7G7K6_9CRUS8.690e-965.79Protein farnesyltransferase subunit beta (Fragment... [more]
F0Y5G6_AURAN1.170e-862.16Protein farnesyltransferase subunit beta n=1 Tax=A... [more]
A0A059LJK1_9CHLO2.240e-860.53Protein farnesyltransferase subunit beta (Fragment... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59778contigEcto-sp13_S_contig59778:101..217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score81.6
Seed ortholog evalue8.7e-14
Seed eggNOG ortholog2880.D7FXI8
Preferred nameFNTB
Model size117
KEGG rclassRC00069,RC03004
KEGG koko:K05954
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,map00900,map01130
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001101,GO:0003674,GO:0003824,GO:0004311,GO:0004659,GO:0004660,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005875,GO:0005965,GO:0006464,GO:0006807,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008284,GO:0008285,GO:0008318,GO:0009414,GO:0009415,GO:0009611,GO:0009628,GO:0009719,GO:0009725,GO:0009737,GO:0009787,GO:0009788,GO:0009889,GO:0009891,GO:0009893,GO:0009934,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010035,GO:0010118,GO:0010556,GO:0010557,GO:0010604,GO:0010646,GO:0010648,GO:0014070,GO:0015630,GO:0016740,GO:0016765,GO:0018342,GO:0018343,GO:0019222,GO:0019538,GO:0022603,GO:0023051,GO:0023057,GO:0032991,GO:0033036,GO:0033993,GO:0034097,GO:0034613,GO:0036211,GO:0042060,GO:0042127,GO:0042221,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045787,GO:0046872,GO:0046914,GO:0048145,GO:0048146,GO:0048509,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051179,GO:0051641,GO:0051726,GO:0051769,GO:0051770,GO:0060255,GO:0065007,GO:0070727,GO:0071704,GO:0072657,GO:0072659,GO:0097305,GO:0097354,GO:0140096,GO:1901419,GO:1901420,GO:1901564,GO:1901700,GO:1902494,GO:1905957,GO:1905958,GO:1990069,GO:1990234,GO:1990778
Exons1
EggNOG free text desc.Prenyltransferase
EggNOG OGsCOG5029@1,KOG0365@2759
Ec32 ortholog descriptionProtein farnesyltransferase subunit beta
Ec32 orthologEc-28_001820.1
EC2.5.1.58
Cds size117
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463830.7378662-CDS-Ecto-sp13_S_contig59778:100..2171681463830.7378662-CDS-Ecto-sp13_S_contig59778:100..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59778 101..217 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59778.16550.1prot_Ecto-sp13_S_contig59778.16550.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59778 101..217 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59778.16550.1

>prot_Ecto-sp13_S_contig59778.16550.1 ID=prot_Ecto-sp13_S_contig59778.16550.1|Name=mRNA_Ecto-sp13_S_contig59778.16550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
NGGFGGGPQQLPHCAPMYASVLSLLILGTPEAYASIER*
back to top

mRNA from alignment at Ecto-sp13_S_contig59778:101..217-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59778.16550.1 ID=mRNA_Ecto-sp13_S_contig59778.16550.1|Name=mRNA_Ecto-sp13_S_contig59778.16550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59778:101..217- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGAGGGTTCGGCGGCGGCCCCCAGCAGCTGCCTCACTGCGCCCCGAT
GTACGCCTCCGTCCTGTCTCTGCTCATCCTTGGAACTCCCGAGGCTTACG
CCAGCATTGAGAGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59778:101..217-

>mRNA_Ecto-sp13_S_contig59778.16550.1 ID=mRNA_Ecto-sp13_S_contig59778.16550.1|Name=mRNA_Ecto-sp13_S_contig59778.16550.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59778:101..217- (Ectocarpus species13 EcNAP12_S_4_19m)
AACGGAGGGTTCGGCGGCGGCCCCCAGCAGCTGCCTCACTGCGCCCCGAT
GTACGCCTCCGTCCTGTCTCTGCTCATCCTTGGAACTCCCGAGGCTTACG
CCAGCATTGAGAGGTAG
back to top