mRNA_Ecto-sp13_S_contig5976.16548.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig5976.16548.1
Unique NamemRNA_Ecto-sp13_S_contig5976.16548.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig5976.16548.1 vs. uniprot
Match: D8LRG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRG0_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.930e-52
Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 MTKSAIKCVAAATLAFAAPSSAASRNGSGLDLLHNVGGKNQRVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEIAAFSC 264
            MTKSAIKC+ AATLAFAAPS+AASRNGSGLDLLHNVGGKNQRVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAE+AAFSC
Sbjct:    1 MTKSAIKCITAATLAFAAPSAAASRNGSGLDLLHNVGGKNQRVAKQDIWLEERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEVAAFSC 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig5976.16548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRG0_ECTSI1.930e-5295.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig5976contigEcto-sp13_S_contig5976:4512..6664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size267
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_004390.1
Cds size267
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463830.6079192-CDS-Ecto-sp13_S_contig5976:4511..46511681463830.6079192-CDS-Ecto-sp13_S_contig5976:4511..4651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5976 4512..4651 -
1681463830.6193292-CDS-Ecto-sp13_S_contig5976:6537..66641681463830.6193292-CDS-Ecto-sp13_S_contig5976:6537..6664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig5976 6538..6664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig5976.16548.1prot_Ecto-sp13_S_contig5976.16548.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig5976 4512..6664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig5976.16548.1

>prot_Ecto-sp13_S_contig5976.16548.1 ID=prot_Ecto-sp13_S_contig5976.16548.1|Name=mRNA_Ecto-sp13_S_contig5976.16548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MTKSAIKCVAAATLAFAAPSSAASRNGSGLDLLHNVGGKNQRVAKQDIWL
EERSAGRLQNTRQEHLAPSIFFDQWQGYYSAEIAAFSC*
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mRNA from alignment at Ecto-sp13_S_contig5976:4512..6664-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig5976.16548.1 ID=mRNA_Ecto-sp13_S_contig5976.16548.1|Name=mRNA_Ecto-sp13_S_contig5976.16548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5976:4512..6664- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAGTCAGCGATCAAGTGCGTCGCCGCAGCCACCCTGGCCTTCGC
CGCTCCGTCATCAGCAGCGTCGAGAAATGGGAGCGGGCTGGACCTTTTGC
ATAACGTCGGCGGGAAGAACCAGCGCGGTGAGCGAGGGAGAGCCTCTGCG
CTGTCGAGAAAAAGAAACTGTTCCCTGCCCACCGAATCAAACATTCGACA
CCTCATGTGTCGCCTGCCTCTCTCTTCGCAGAGAGCACCCTTAGCAGGCT
GGTAAGACAGAGAAGAAGCCTGTGCGGTCGATGCCATCCTGAGGTTCTCC
TGGATGAACAAATCCGAGGGACATCAGATGGTGTTGTTCGAGTTGTTGTC
TTAGGGTCCGCTAATTAGGCGTCGGGTCGTTGCCCCTCCGAGAGAAGCAC
ACGCTCTCTCCGCTTGTGCCTCATGGAGCGTACGCGCACGCGCTCGTACC
ACACCACGGAAGAGGCGTTGTCTGTCCTTGTCCAGCGATACGCTGATACC
TCACCCACGCGCTCAACAGCACGGCCCACCGCAGACAAAAATCCTAGAAA
CGGTAGTCGTGATATGCGAACGCGGCACGGACTTTTTTTTCATCCCTTTT
TTTTGAGAGCTGGCAGAAAGATCACGTAAATTGTCATGAGCAGCGGCTCT
CTCATGTTTATCCATCTCCAATGTAGGTGACACCTCGGTCGGACCCGAGC
GCGACCTAGCGGTAGCATCACAGAAGCCCAGGTTAAAGACTGTGGCTGTA
CGAGGGTCGGAGGTCCGCTCTCTCATTTCTCGCGGAAGTCTTCTGATGAA
ATAAACAAAACCTGCCTCTATGCATGAAGAACAAATCCGTTCCCACGAAC
GGCATCATGTCGGGCCCGGTTTGCGGGTGAACAGCAGGCGCGTCGACGGA
CGCGACGGGCATGTATTCCATTTTTGTACACATCGCATGGGATAGACTCC
ACGGTACGTCATTTGATTCGGTATTGTAGCCAGTGCGATGAGGTCGTGGA
ACCGATTGGGGTGTAGCCATCAAGGGTACGCAGGTTCTCACGATTGCAGA
GAGTGCGGCAGGTAACAAGGAGGAGCAGCCCTGATCGGCGGTTTTGCCGC
ATAAAGCAGACGTACGTACTTCAAGATGCTGTAGAAGTTCACACTGATCG
TATTTGCGTAGACGTTGCACCTCGAACTCGTGTGTCTCCCGTGAGCATTT
TCACCTCGGAGCTTCCCTACCTCTTCCTCTCGAACCCCTAGTGACGTGTT
GCGCCTTTTCCATCGATATCCGCCCCACAACCCCCAAGACCTCGTCGTCA
ATCACCCTCGATTCCGCGACAACCACATTGTGGTTTCTTGTCGAACCCCT
ACAGACAATCGCCCTGATTGGTCGGGACCCAAGCCAAGTTGTTTCTGAGC
TTCGTGCAACTGCAACGGACACAACATGTTCAACACGAATAGCCTTTCAC
CCACACTGGCGTACGTCTACCGATTTATCGGGCATCCGATGTCCAATCGG
TAGTATTCTAAATAGCGCAGTTATCCCTTCAACCAAAACATGCACACTCG
ATTTGTGACGGCCGTTTGTGCAGTCAGGGTTACAAGACTTGGTTGAAAGG
AGTGAGAAAACGGCCGACCAGCTCACCCGAGTCACAGAGCAAGGTCCTTG
TAGGTTGATGAGATGTATGCATGGAGACGAGCTCCAGGGTTTTCTCGGTC
ACCTCTCTTGGCGCAAGTGCCGGTCGACGACGAATGGTACTTTTCGGTAG
GTACATACACGCGCAGTGGATCTCATGTCCTGGGATGGCTACGCAAGCCC
TACACGAAACATACCATAGGTGGGATCCGTGAAGTTGCCCTCTTTGTCTC
AGTATCTATGTGTGTGCACCTCGATCTCATGTACACGGCTGTTGTCTACC
CCGTACTCTTTTCTCAACTCGCCCTTGCATCTCCGTTTCCGTGGAAGTGC
CGCTTGTTCTTACCCTCGTCCCCCCCCCCGCCCGTCCCCCGCGTATTCAT
TGGTCAACACCAGTCGCAAAGCAAGACATCTGGTTGGAGGAGCGCTCCGC
GGGGCGGCTGCAAAACACCCGCCAAGAACACCTAGCCCCGTCGATATTCT
TCGACCAGTGGCAGGGGTACTACAGCGCGGAGATCGCTGCGTTTTCCTGC
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig5976:4512..6664-

>mRNA_Ecto-sp13_S_contig5976.16548.1 ID=mRNA_Ecto-sp13_S_contig5976.16548.1|Name=mRNA_Ecto-sp13_S_contig5976.16548.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig5976:4512..6664- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGAAGTCAGCGATCAAGTGCGTCGCCGCAGCCACCCTGGCCTTCGC
CGCTCCGTCATCAGCAGCGTCGAGAAATGGGAGCGGGCTGGACCTTTTGC
ATAACGTCGGCGGGAAGAACCAGCGCGTCGCAAAGCAAGACATCTGGTTG
GAGGAGCGCTCCGCGGGGCGGCTGCAAAACACCCGCCAAGAACACCTAGC
CCCGTCGATATTCTTCGACCAGTGGCAGGGGTACTACAGCGCGGAGATCG
CTGCGTTTTCCTGCTGA
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