mRNA_Ecto-sp13_S_contig59757.16547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59757.16547.1
Unique NamemRNA_Ecto-sp13_S_contig59757.16547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig59757.16547.1 vs. uniprot
Match: D7G061_ECTSI (Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G061_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 6.100e-9
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = -2 
Query:    3 NKVTVVIVAAGLKWITKVPLGMASVVLQLEGSAE 104
             KV V+IVAAGLKWITKVPLGMASVVLQLEGSAE
Sbjct: 2304 TKVAVIIVAAGLKWITKVPLGMASVVLQLEGSAE 2337
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59757.16547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G061_ECTSI6.100e-991.18Metacaspase n=3 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59757contigEcto-sp13_S_contig59757:3..692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463830.5611265-CDS-Ecto-sp13_S_contig59757:2..1041681463830.5611265-CDS-Ecto-sp13_S_contig59757:2..104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59757 3..104 +
1681463830.5759115-CDS-Ecto-sp13_S_contig59757:613..6911681463830.5759115-CDS-Ecto-sp13_S_contig59757:613..691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59757 614..691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59757.16547.1prot_Ecto-sp13_S_contig59757.16547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59757 3..691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59757.16547.1

>prot_Ecto-sp13_S_contig59757.16547.1 ID=prot_Ecto-sp13_S_contig59757.16547.1|Name=mRNA_Ecto-sp13_S_contig59757.16547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
PSAEPSSCSTTDAMPRGTFVIHLRPAATITTVTLFWRRRVKAEGIEDAGD
RWPTTCTLGK
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mRNA from alignment at Ecto-sp13_S_contig59757:3..692+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59757.16547.1 ID=mRNA_Ecto-sp13_S_contig59757.16547.1|Name=mRNA_Ecto-sp13_S_contig59757.16547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=690bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59757:3..692+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCAGCAGAGCCTTCGAGCTGCAGCACCACTGATGCCATGCCCAGGGG
GACCTTTGTGATCCACTTGAGGCCGGCAGCAACAATTACCACCGTGACCT
TGGTGAGAGGATCGGCTGTCGATTTAACAATCTGCTTCCCGAACGCCGTA
GCTATCTGACTGGCTCCCTTGAAGATCCCGTGAGAACCTGTGGAGAAGGG
TGTGGTTGTTTGGTCTCAGAGCTGATATCATCTGACTGCTGTTCATTTCT
GTATCTCGCCTTCGTGTGTGGCGGTACACCCCAAAATGATCGGTCGAATC
ATACAGAAGTTCCAGCTACAGTACGTTGGCTTGATGGATGGCCTGATCCC
TGGTGATAGTACAGACATCTCTCATCAAGTCGTCACCAGCCCCACCGACT
CGAGTAGTTGGCTCCTTCAGGACACCACCTCCGTCACTCCTTCGTCGCAA
CTAAGTACCGCAGAGTGGTAGACTGCACACATCACCTTGAAACTTCATCG
TTCTTTCCTGGCGGCCGCCTTCGTCGAGCTCCTTTGCAAGCGCGATCATC
CTGCTCCCCCTCGCGATCTCAGCGATACCGTCGGCGACGTCGAAAATAAT
CGCCGGGACAGTTCTGGAGGCGAAGGGTGAAAGCAGAGGGAATCGAAGAC
GCAGGAGACCGTTGGCCTACGACATGCACGCTTGGGAAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59757:3..692+

>mRNA_Ecto-sp13_S_contig59757.16547.1 ID=mRNA_Ecto-sp13_S_contig59757.16547.1|Name=mRNA_Ecto-sp13_S_contig59757.16547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59757:3..692+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCTCAGCAGAGCCTTCGAGCTGCAGCACCACTGATGCCATGCCCAGGGG
GACCTTTGTGATCCACTTGAGGCCGGCAGCAACAATTACCACCGTGACCT
TGTTCTGGAGGCGAAGGGTGAAAGCAGAGGGAATCGAAGACGCAGGAGAC
CGTTGGCCTACGACATGCACGCTTGGGAAG
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