mRNA_Ecto-sp13_S_contig59742.16546.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig59742.16546.1
Unique NamemRNA_Ecto-sp13_S_contig59742.16546.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: UPI00128F1D07 (helix-turn-helix domain-containing protein n=1 Tax=Brevundimonas sp. Bb-A TaxID=2560058 RepID=UPI00128F1D07)

HSP 1 Score: 57.4 bits (137), Expect = 1.640e-9
Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   19 FGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGV 180
            FG+ +RALR E  LSQEEL +RAG  RT++S +E GT  PT+ +L RLA ALGV
Sbjct:    7 FGKNVRALRDEAGLSQEELAFRAGMKRTYLSDLERGTRNPTVRALGRLAAALGV 60          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: UPI0009DD6870 (helix-turn-helix domain-containing protein n=1 Tax=Brevundimonas abyssalis TaxID=1125965 RepID=UPI0009DD6870)

HSP 1 Score: 56.6 bits (135), Expect = 3.310e-9
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   19 FGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGVP 183
            FGR +RALR++  LSQEEL +RAG  R+++S +E GT  PT+ +L RLA AL VP
Sbjct:    7 FGRNVRALREKAGLSQEELAFRAGMKRSYVSDLERGTRNPTVRALGRLAAALDVP 61          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A3C0W231_9CAUL (Transcriptional regulator n=2 Tax=Brevundimonas TaxID=41275 RepID=A0A3C0W231_9CAUL)

HSP 1 Score: 53.9 bits (128), Expect = 3.840e-8
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   19 FGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGVP 183
            FG+ +RALR E  LSQEEL +RAG  R ++S +E GT  PT+  L RLA AL VP
Sbjct:    7 FGKNVRALRDEADLSQEELAFRAGMKRGYLSDLERGTRNPTVRCLGRLAKALNVP 61          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A2T5CAG4_9DELT (XRE family transcriptional regulator n=1 Tax=Desulfonatronum sp. SC1 TaxID=2109626 RepID=A0A2T5CAG4_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 6.150e-8
Identity = 30/59 (50.85%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    7 LAHAFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGVP 183
            LA AFG  LR++RKER LSQEELG  +G  RT++S +E G   P++ ++++LA AL  P
Sbjct:   12 LARAFGDVLRSVRKERGLSQEELGDESGYHRTYVSLLERGLKSPSLQTIFQLAHALNTP 70          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A1F4KGH4_9BURK (HTH cro/C1-type domain-containing protein n=1 Tax=Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 TaxID=1797566 RepID=A0A1F4KGH4_9BURK)

HSP 1 Score: 53.5 bits (127), Expect = 1.020e-7
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1
Query:   16 AFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGV 180
            AFG R++ LR +RSL+QEEL  R G  RT++S IE G A PT+  LY LA AL V
Sbjct:   11 AFGLRIKELRAQRSLTQEELAERTGMFRTYMSRIEAGLANPTLTMLYTLAGALEV 65          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A410MFK9_9BACI (XRE family transcriptional regulator n=1 Tax=Halobacillus litoralis TaxID=45668 RepID=A0A410MFK9_9BACI)

HSP 1 Score: 52.8 bits (125), Expect = 1.710e-7
Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   16 AFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGV 180
            +FG+ L+++R E SLSQEEL +RAG   T+IS IE G   PT+ S+Y++A+AL V
Sbjct:   12 SFGKHLKSVRHEFSLSQEELAFRAGMDPTYISGIERGKKNPTVTSIYQIAIALKV 66          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A0F9DAA4_9ZZZZ (HTH cro/C1-type domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9DAA4_9ZZZZ)

HSP 1 Score: 52.8 bits (125), Expect = 1.790e-7
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   19 FGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGVP 183
             G R+RALR+ RS+SQEELG+RA   RT+I  +E G   P++  L+R+A AL +P
Sbjct:   26 LGSRIRALREGRSISQEELGFRANVHRTYIGAVERGETLPSLEVLFRIAEALKIP 80          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A4R5DJN7_9ACTN (XRE family transcriptional regulator n=1 Tax=Jiangella asiatica TaxID=2530372 RepID=A0A4R5DJN7_9ACTN)

HSP 1 Score: 52.4 bits (124), Expect = 1.840e-7
Identity = 31/56 (55.36%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   16 AFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGVP 183
            AFGRR+R LRKE  LSQEEL  RA   RT++  IE G     + +++RLA ALGVP
Sbjct:   14 AFGRRVRELRKELGLSQEELADRADLHRTYVGSIERGERNVALINIHRLAKALGVP 69          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: UPI001ADDA8B3 (helix-turn-helix domain-containing protein n=2 Tax=Mannheimia TaxID=75984 RepID=UPI001ADDA8B3)

HSP 1 Score: 52.4 bits (124), Expect = 1.970e-7
Identity = 27/57 (47.37%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    7 LAHAFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALG 177
            +A AFGR +R LRK+++LSQEELG+ A   R ++S +E G   P+I ++++LA  LG
Sbjct:    4 IAIAFGRAIRQLRKQKNLSQEELGFEADLQRIYVSKLELGQQQPSITTIFKLAKGLG 60          
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Match: A0A326L239_9CAUL (Transcriptional regulator n=1 Tax=Brevundimonas sp. TaxID=1871086 RepID=A0A326L239_9CAUL)

HSP 1 Score: 52.0 bits (123), Expect = 2.260e-7
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   19 FGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIASLYRLALALGV 180
             GRR++ LRKE  LSQEEL +RA   R+++S +E G   PT+ +L RLA+ALGV
Sbjct:    7 LGRRVKTLRKEAKLSQEELAFRAEMKRSYVSDLERGKRNPTVRALGRLAVALGV 60          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig59742.16546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00128F1D071.640e-959.26helix-turn-helix domain-containing protein n=1 Tax... [more]
UPI0009DD68703.310e-956.36helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A3C0W231_9CAUL3.840e-856.36Transcriptional regulator n=2 Tax=Brevundimonas Ta... [more]
A0A2T5CAG4_9DELT6.150e-850.85XRE family transcriptional regulator n=1 Tax=Desul... [more]
A0A1F4KGH4_9BURK1.020e-756.36HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A410MFK9_9BACI1.710e-752.73XRE family transcriptional regulator n=1 Tax=Halob... [more]
A0A0F9DAA4_9ZZZZ1.790e-750.91HTH cro/C1-type domain-containing protein n=1 Tax=... [more]
A0A4R5DJN7_9ACTN1.840e-755.36XRE family transcriptional regulator n=1 Tax=Jiang... [more]
UPI001ADDA8B31.970e-747.37helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A326L239_9CAUL2.260e-753.70Transcriptional regulator n=1 Tax=Brevundimonas sp... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig59742contigEcto-sp13_S_contig59742:520..714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size195
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463830.503691-CDS-Ecto-sp13_S_contig59742:519..7141681463830.503691-CDS-Ecto-sp13_S_contig59742:519..714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig59742 520..714 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig59742.16546.1prot_Ecto-sp13_S_contig59742.16546.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig59742 520..714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig59742.16546.1

>prot_Ecto-sp13_S_contig59742.16546.1 ID=prot_Ecto-sp13_S_contig59742.16546.1|Name=mRNA_Ecto-sp13_S_contig59742.16546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
AQLAHAFGRRLRALRKERSLSQEELGWRAGTCRTWISHIECGTACPTIAS
LYRLALALGVPLAAL
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mRNA from alignment at Ecto-sp13_S_contig59742:520..714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig59742.16546.1 ID=mRNA_Ecto-sp13_S_contig59742.16546.1|Name=mRNA_Ecto-sp13_S_contig59742.16546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59742:520..714- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGTTGGCGCACGCCTTCGGGCGGCGCCTCCGCGCCCTGCGCAAAGA GCGCAGTCTCTCCCAGGAGGAACTCGGCTGGCGCGCCGGCACCTGCCGCA CCTGGATTTCCCATATCGAATGTGGCACCGCCTGCCCCACCATCGCCAGT CTGTACCGCCTCGCCCTGGCCCTCGGCGTGCCCCTCGCCGCCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig59742:520..714-

>mRNA_Ecto-sp13_S_contig59742.16546.1 ID=mRNA_Ecto-sp13_S_contig59742.16546.1|Name=mRNA_Ecto-sp13_S_contig59742.16546.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig59742:520..714- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGTTGGCGCACGCCTTCGGGCGGCGCCTCCGCGCCCTGCGCAAAGA
GCGCAGTCTCTCCCAGGAGGAACTCGGCTGGCGCGCCGGCACCTGCCGCA
CCTGGATTTCCCATATCGAATGTGGCACCGCCTGCCCCACCATCGCCAGT
CTGTACCGCCTCGCCCTGGCCCTCGGCGTGCCCCTCGCCGCCCTC
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